genome.fa.s101.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  115  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19763652--19764983	675	2.0	671	87	3	1916	26	23	24	25	2.00
19764936--19764985	26	1.9	26	87	0	73	22	10	16	52	1.73
19766302--19766354	26	2.0	26	96	0	97	28	20	24	26	1.99
19768075--19768153	26	3.0	26	94	0	140	26	21	24	27	1.99
19766541--19769023	924	2.7	925	87	4	3444	25	23	24	26	2.00
19768256--19770489	717	3.1	712	88	2	3294	25	23	24	26	2.00
19769687--19773777	873	4.7	870	87	2	5688	25	23	24	26	2.00
19774746--19774796	26	2.0	26	88	7	77	29	15	23	31	1.95
19775645--19775694	26	1.9	26	95	0	91	26	22	28	24	1.99
19773784--19776548	902	3.1	900	85	4	3716	25	24	24	25	2.00
19777988--19778040	26	2.0	26	92	0	88	28	18	24	28	1.98
19778152--19780345	718	3.1	714	87	2	3079	25	22	24	27	2.00
19780319--19780371	26	2.0	26	88	0	79	28	16	24	30	1.97
19781224--19781276	26	2.0	26	96	0	97	28	20	24	26	1.99
19782783--19782832	26	1.9	26	95	0	91	30	16	24	30	1.96
19783669--19783721	26	2.0	26	92	0	88	26	16	26	30	1.97
19784555--19784607	26	2.0	26	96	0	97	26	18	26	28	1.98
19782698--19788109	878	6.1	886	83	6	6407	25	23	25	25	2.00
19785436--19785488	26	2.0	26	89	7	81	26	15	26	32	1.95
19788441--19789838	711	2.0	713	90	0	2237	25	23	24	26	2.00
19789812--19789864	26	2.0	26	89	7	81	26	18	26	28	1.98
19789193--19793435	925	4.7	872	83	6	5024	25	23	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19792484--19792562	26	3.0	26	94	0	140	26	21	24	27	1.99
19792665--19794885	712	3.1	710	87	2	3117	25	23	23	27	2.00
19794113--19798167	876	4.7	868	86	3	5435	25	23	24	26	2.00
19799135--19799187	26	2.0	26	85	7	72	28	18	22	30	1.98
19800912--19800996	43	2.0	43	85	0	116	24	27	21	27	1.99
19802410--19802462	26	2.0	26	96	0	97	26	18	26	28	1.98
19802575--19804768	718	3.1	713	87	3	3161	26	23	23	26	2.00
19804742--19804794	26	2.0	26	92	0	88	26	16	26	30	1.97
19806379--19806431	26	2.0	26	92	0	88	28	18	24	28	1.98
19807974--19808033	26	2.4	26	77	5	70	33	16	21	28	1.95
19807625--19808987	672	2.0	673	82	7	1635	26	25	26	20	1.99
19809552--19809631	26	3.0	26	94	3	142	26	18	26	28	1.98
19809552--19809631	27	3.0	27	96	3	146	26	18	26	28	1.98
19810480--19810532	26	2.0	26	92	0	88	28	18	24	28	1.98
19808679--19815194	903	7.3	900	85	4	7813	25	24	25	25	2.00
19812278--19812330	26	2.0	26	92	0	88	28	15	24	32	1.95
19813179--19813231	26	2.0	26	92	0	88	24	20	30	24	1.99
19815513--19815565	26	2.0	26	92	0	88	28	18	24	28	1.98
19815192--19817420	898	2.5	896	86	2	3076	25	24	24	25	2.00
19817312--19817364	26	2.0	26	85	7	72	28	18	24	28	1.98
19818585--19818637	26	2.0	26	96	0	97	26	22	26	24	2.00
19819498--19819549	26	2.0	26	100	0	104	26	19	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19818344--19822410	897	4.5	897	87	2	5420	25	24	24	25	2.00
19821290--19821339	26	1.9	26	92	8	84	34	16	18	32	1.92
19822922--19822974	26	2.0	26	96	0	97	26	18	26	28	1.98
19821530--19823731	729	3.0	730	81	6	2832	25	23	23	26	2.00
19824563--19824615	26	2.0	26	88	0	79	30	15	24	30	1.95
19822948--19825118	896	2.4	892	87	3	3175	25	23	24	26	2.00
19825324--19825376	26	2.0	26	88	0	79	28	18	24	28	1.98
19824350--19825889	769	2.0	765	86	2	2167	25	24	24	24	2.00
19826218--19826267	26	1.9	26	91	0	82	30	20	26	24	1.98
19827106--19827158	26	2.0	26	100	0	106	26	20	26	26	1.99
19825119--19829926	894	5.4	888	84	5	5868	25	24	24	24	2.00
19829794--19829846	26	2.0	26	92	0	88	28	20	22	28	1.99
19831395--19831448	26	2.1	26	100	0	108	25	20	25	27	1.99
19829820--19842135	879	13.8	900	84	5	14631	25	23	24	25	2.00
19833193--19833245	26	2.0	26	96	0	97	26	18	26	28	1.98
19834097--19834149	26	2.0	26	92	0	88	30	18	24	26	1.98
19834331--19834364	12	2.8	12	91	8	52	8	32	58	0	1.29
19835244--19835274	8	3.9	8	95	0	53	9	25	64	0	1.24
19835917--19835969	26	2.0	26	85	7	72	32	18	20	28	1.97
19836777--19836829	26	2.0	26	85	7	72	26	20	22	30	1.98
19829887--19842135	885	13.7	888	84	6	13238	25	23	24	25	2.00
19838484--19838509	11	2.4	11	100	0	52	19	30	30	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19838590--19838642	26	2.0	26	88	0	79	24	24	22	28	2.00
19839457--19839509	26	2.0	26	89	7	81	26	20	24	28	1.99
19842986--19845786	716	3.9	715	87	4	3972	26	22	23	26	2.00
19846539--19846590	25	2.0	26	85	3	70	25	15	26	32	1.95
19846565--19846981	159	2.6	158	79	3	462	24	28	27	18	1.98
19847599--19847651	26	2.0	26	92	0	88	28	18	24	28	1.98
19848506--19848558	26	2.0	26	92	0	88	28	18	24	28	1.98
19846930--19853859	869	7.8	875	83	6	7711	25	23	24	25	2.00
19848624--19853859	899	5.9	897	85	4	6614	25	23	24	25	2.00
19851177--19851229	26	2.0	26	89	7	81	26	18	26	28	1.98
19852048--19852099	26	2.0	26	92	0	86	26	15	26	30	1.96
19852937--19852986	26	1.9	26	100	0	100	28	22	26	24	1.99
19845065--19853859	869	9.8	890	79	9	7091	25	24	24	25	2.00
19854307--19854359	26	2.0	26	92	0	88	28	18	24	28	1.98
19856246--19856297	26	2.0	26	96	0	95	26	17	23	32	1.96
19857155--19858220	532	2.0	532	86	2	1505	23	21	25	29	1.99
19858582--19858634	26	2.0	26	92	0	88	26	16	26	30	1.97
19859475--19859525	26	2.0	26	92	0	84	31	15	27	25	1.96
19860367--19860419	26	2.0	26	96	0	97	26	18	24	30	1.98
19857687--19862019	892	4.8	886	85	4	5538	25	22	24	26	2.00
19861259--19861308	26	1.9	26	95	0	91	30	20	24	26	1.98
19863468--19863520	26	2.0	26	96	0	97	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19864375--19864427	26	2.0	26	92	0	88	30	20	22	26	1.98
19864574--19864606	4	8.2	4	93	0	57	3	27	69	0	1.03
19866159--19866211	26	2.0	26	92	0	88	28	18	24	28	1.98
19863038--19868536	903	6.1	901	83	6	6272	25	23	24	25	2.00
19867058--19867110	26	2.0	26	92	0	88	26	20	24	28	1.99
19867927--19868002	26	2.9	26	100	0	152	27	19	26	26	1.99
19868694--19868746	26	2.0	26	88	0	79	28	20	22	28	1.99
19869581--19869630	26	1.9	26	100	0	100	28	22	26	24	1.99
19870479--19870528	26	1.9	26	95	0	91	30	20	24	26	1.98
19870977--19871029	26	2.0	26	92	0	88	26	16	26	30	1.97
19872754--19872806	26	2.0	26	100	0	106	26	20	26	26	1.99
19872780--19873154	158	2.4	158	86	3	504	23	28	26	21	1.99
19874326--19874399	26	2.8	26	93	0	121	27	17	27	28	1.98
19875246--19875298	26	2.0	26	92	0	88	26	16	26	30	1.97
19876820--19876872	26	2.0	26	92	0	88	26	22	22	28	1.99
19875357--19876871	744	2.0	744	86	2	2159	27	22	23	26	2.00
19878390--19878441	26	2.0	25	88	3	77	28	21	26	23	1.99
19883089--19883141	26	2.0	26	96	0	97	32	20	20	26	1.98
19881585--19884009	890	2.7	882	85	4	3153	25	23	23	26	2.00
19884695--19884746	26	2.0	26	92	0	86	28	17	25	28	1.97
19886310--19886358	26	1.9	26	95	4	91	30	22	22	24	1.99
19887212--19887264	26	2.0	26	96	0	97	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19885595--19889010	869	3.8	898	85	4	4475	25	24	24	25	2.00
19888248--19890301	713	2.9	711	88	3	3038	26	22	23	27	2.00
19892089--19894651	718	3.6	714	88	2	3707	26	23	22	27	2.00
19894125--19895169	527	2.0	530	90	1	1650	28	21	21	29	1.98
19894652--19896604	707	2.8	706	89	1	2955	26	22	22	27	1.99
19896660--19896740	26	3.1	26	92	0	144	25	20	24	28	1.99
19897565--19897617	26	2.0	26	96	0	97	30	22	20	26	1.98
19898449--19898501	26	2.0	26	92	0	88	28	20	26	24	1.99
19895965--19900267	875	4.9	883	86	4	5783	25	23	24	26	2.00
19900582--19900634	26	2.0	26	96	0	97	26	18	26	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117