genome.fa.s101.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  55  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10254338--10254388	17	2.9	17	80	11	59	25	7	0	66	1.18
10254404--10254451	26	1.9	26	87	8	73	68	6	4	20	1.28
10254404--10254469	26	2.6	24	79	11	69	72	6	3	18	1.18
10254430--10254470	19	2.2	19	86	8	57	75	4	2	17	1.08
10254912--10255037	44	2.8	44	83	3	146	48	11	12	26	1.76
10254843--10255037	44	4.5	43	74	11	141	46	12	12	28	1.78
10255056--10255111	27	2.0	27	82	3	67	51	12	7	28	1.65
10261578--10261856	144	1.9	145	86	3	402	31	11	13	43	1.79
10261585--10261890	144	2.1	145	84	4	395	33	12	12	41	1.79
10269443--10269519	24	3.2	24	72	22	70	77	2	5	14	1.04
10269453--10269505	14	3.6	14	73	9	52	79	1	3	15	0.96
10269443--10269518	18	4.2	18	79	12	68	77	2	5	14	1.05
10269477--10269519	19	2.2	20	84	12	63	76	0	9	13	1.01
10270217--10270303	3	29.7	3	87	9	117	72	0	1	26	0.92
10270353--10270575	91	2.5	89	79	4	216	43	9	6	39	1.64
10273660--10273942	118	2.3	120	85	6	367	33	13	7	45	1.71
10273660--10273964	121	2.5	119	82	9	359	34	12	7	45	1.71
10273961--10274097	5	26.6	5	68	20	61	73	3	4	18	1.14
10273960--10274044	30	2.9	29	83	10	102	77	2	5	14	1.05
10273961--10274051	6	15.5	6	69	16	57	78	2	5	14	1.03
10273956--10274065	53	2.1	53	81	13	129	75	1	6	16	1.09
10273961--10274097	17	8.1	16	70	14	71	73	3	4	18	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10275103--10275188	33	2.5	34	75	11	95	77	2	3	16	1.00
10275108--10275183	14	4.9	14	72	21	62	77	2	2	17	1.00
10275128--10275179	27	1.9	27	84	7	70	76	3	1	17	1.02
10275105--10275182	12	6.4	12	70	16	54	78	2	2	16	0.98
10275397--10275508	41	2.7	41	88	6	154	40	19	12	27	1.88
10275373--10275712	83	4.1	82	83	4	358	36	21	16	25	1.94
10275440--10275712	41	6.6	41	86	2	330	37	20	16	25	1.93
10276708--10276761	24	2.3	24	87	3	74	9	7	0	83	0.82
10279775--10279844	6	11.0	6	77	13	61	21	1	1	75	0.96
10279779--10279842	33	1.9	34	84	9	87	21	1	1	75	0.98
10279958--10280035	22	3.6	21	78	16	70	24	5	7	62	1.42
10280963--10281018	13	4.3	13	71	15	53	16	5	1	76	1.05
10281030--10281300	58	4.7	58	86	5	379	44	7	13	34	1.72
10281018--10281300	117	2.4	116	88	3	419	45	7	12	33	1.71
10285169--10285219	26	2.0	26	84	7	68	76	0	15	7	1.00
10286475--10286777	42	7.3	41	90	1	417	26	16	21	35	1.94
10286477--10286814	84	4.0	83	87	4	439	25	17	21	36	1.94
10286821--10286849	9	3.3	9	95	4	51	93	6	0	0	0.36
10287017--10287047	6	5.2	6	96	0	53	19	0	0	80	0.71
10287164--10287277	22	5.2	21	72	18	72	19	6	8	65	1.41
10288091--10288256	5	33.6	5	68	23	77	17	3	3	75	1.07
10288085--10288146	27	2.3	27	77	8	63	20	0	4	74	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10288077--10288261	17	11.1	16	67	20	67	17	3	3	75	1.09
10288091--10288251	11	15.0	10	66	20	60	17	3	3	75	1.07
10288150--10288225	34	2.2	33	82	13	91	14	5	2	77	1.05
10288164--10288257	30	3.2	30	79	10	104	13	6	1	78	0.99
10288270--10288612	58	5.8	59	82	6	401	46	7	12	34	1.70
10288272--10288609	116	2.9	117	89	3	482	46	7	12	33	1.69
10296622--10296702	26	3.2	26	63	16	69	37	11	8	43	1.71
10296630--10296710	27	3.2	25	65	25	62	40	12	6	40	1.68
10296518--10296827	54	5.7	55	87	10	435	37	10	6	45	1.66
10296852--10296929	17	5.0	16	75	19	67	79	2	6	11	1.01
10296850--10296921	22	3.3	21	78	7	81	81	2	4	11	0.92
10296840--10296986	5	29.8	5	71	17	71	76	3	3	16	1.05
10296954--10296988	13	2.8	13	86	4	54	85	0	0	14	0.59
10297756--10297808	9	5.8	9	80	10	54	67	5	1	24	1.22
10297756--10297789	16	2.1	16	89	10	52	70	2	0	26	1.01
10297777--10297829	18	2.8	19	76	15	56	64	5	3	26	1.33
10298717--10299099	179	2.2	176	80	6	418	38	9	12	38	1.77
10298785--10300182	91	15.5	91	74	5	872	40	9	9	39	1.71
10299051--10299825	178	4.3	181	77	5	616	41	8	9	40	1.68
10298872--10300070	269	4.4	270	78	6	857	40	9	9	40	1.69
10298785--10300163	181	7.7	181	75	6	782	40	9	9	40	1.71
10300399--10300429	16	1.9	16	93	0	53	41	3	0	54	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10303490--10303572	41	2.0	41	100	0	166	26	14	14	44	1.83
10308892--10308930	20	2.0	19	85	14	53	58	10	7	23	1.56
10309355--10310791	719	2.0	719	99	0	2831	39	17	9	33	1.82
10311652--10312112	87	5.2	87	73	9	356	41	8	10	39	1.70
10311701--10312171	91	5.2	89	74	8	299	42	9	9	39	1.70
10312144--10312213	34	2.1	34	86	0	95	37	11	8	42	1.72
10312161--10312213	18	3.1	17	74	20	56	39	9	5	45	1.60
10312178--10313028	91	9.4	91	76	7	599	39	9	9	41	1.70
10312636--10313030	183	2.2	178	81	5	465	39	9	9	41	1.71
10314620--10314666	17	2.6	18	80	13	60	36	0	2	61	1.08
10314921--10315038	32	3.8	29	78	16	114	39	1	6	51	1.38
10316642--10316666	2	12.5	2	100	0	50	52	0	0	48	1.00
10326661--10326871	57	3.7	57	78	11	157	45	3	8	42	1.52
10333248--10333510	133	2.0	133	91	0	427	35	13	21	29	1.92
10334909--10335105	99	2.0	100	86	2	279	30	21	5	43	1.74
10340346--10340386	21	2.0	21	95	0	73	34	31	21	12	1.91
10342758--10342873	49	2.3	52	82	8	141	25	23	9	41	1.84
10343225--10343282	23	2.4	23	83	11	64	22	29	10	37	1.87
10343838--10343977	48	2.8	50	80	9	153	26	22	9	41	1.84
10344002--10344044	22	2.0	22	95	0	77	48	30	0	20	1.50
10345465--10345498	14	2.2	16	90	10	54	52	5	2	38	1.41
10345483--10345770	61	4.8	59	86	7	393	43	8	12	34	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10345471--10345770	121	2.5	121	87	6	423	44	8	12	34	1.72
10350453--10350507	15	3.6	15	75	9	58	72	0	12	14	1.12
10351867--10351948	43	1.9	42	87	7	121	36	10	17	35	1.85
10352252--10352584	42	7.8	42	85	5	384	25	16	19	38	1.92
10354577--10354855	60	4.7	59	82	7	316	44	6	12	36	1.70
10354573--10354855	119	2.4	119	90	2	435	43	6	12	37	1.69
10356273--10356330	20	2.9	20	94	0	98	18	31	27	22	1.97
10356497--10356525	3	9.7	3	100	0	58	31	0	0	68	0.89
10357018--10357088	31	2.3	31	80	4	90	28	23	23	23	2.00
10357143--10357188	19	2.4	19	85	0	56	26	30	19	23	1.98
10357589--10358372	157	4.8	158	74	13	691	28	14	17	39	1.89
10357747--10358370	177	3.8	167	92	5	947	27	14	17	40	1.89
10366252--10366311	28	2.1	28	84	6	75	71	8	1	18	1.19
10366599--10366658	27	2.1	29	93	6	106	36	25	3	35	1.72
10366785--10366819	2	17.5	2	100	0	70	51	0	48	0	1.00
10372246--10372492	95	2.7	95	79	9	244	43	2	2	51	1.27
10373416--10373464	20	2.4	21	86	6	73	61	0	0	38	0.96
10373887--10373921	15	2.2	17	90	10	56	31	0	0	68	0.90
10375659--10375704	19	2.4	18	83	16	58	30	0	4	65	1.12
10378817--10379085	135	2.0	134	92	2	450	35	15	16	31	1.91
10390167--10390213	2	24.0	2	86	4	60	48	0	4	46	1.21
10395662--10395711	17	2.9	17	77	14	57	68	10	6	16	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10395840--10395899	23	2.6	23	81	7	68	73	10	11	5	1.24
10395855--10395903	23	2.1	23	88	7	73	75	10	10	4	1.17
10405066--10405106	21	2.0	21	90	0	64	46	9	0	43	1.36
10405080--10405180	32	3.2	31	76	16	100	54	4	2	37	1.37
10405359--10405409	17	2.9	17	77	11	50	47	0	1	50	1.12
10405529--10405566	20	1.9	20	84	10	51	42	2	10	44	1.52
10405572--10405616	15	2.8	17	77	16	51	42	4	0	53	1.21
10405763--10405802	17	2.3	17	82	4	53	75	2	22	0	0.93
10413141--10413236	48	2.0	48	95	0	174	30	19	15	34	1.93
10415166--10415203	19	2.0	20	89	5	60	31	0	2	65	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117