genome.fa.s101.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  18  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1963585--1963623	20	1.9	19	85	10	51	38	0	2	58	1.12
1964242--1964291	17	3.1	16	80	11	57	64	0	0	36	0.94
1965135--1965187	21	2.5	21	93	6	90	43	15	0	41	1.46
1965414--1965446	17	1.9	17	88	11	50	60	9	6	24	1.49
1967233--1967414	89	2.0	89	95	2	330	38	10	9	41	1.73
1968829--1968853	9	2.8	9	100	0	50	20	20	12	48	1.80
1968937--1969001	25	2.5	27	85	9	91	55	0	1	43	1.09
1969156--1969198	19	2.2	20	83	4	52	41	2	2	53	1.26
1974450--1974476	1	27.0	1	100	0	54	0	0	0	100	0.00
1978067--1978158	40	2.2	40	88	3	130	47	6	18	27	1.73
1978786--1978818	17	1.9	17	100	0	66	39	12	18	30	1.87
1979217--1979298	38	2.1	39	84	4	103	32	6	8	52	1.57
1980192--1980227	15	2.4	15	86	13	56	41	0	0	58	0.98
1981959--1981995	15	2.5	15	86	13	58	43	0	0	56	0.99
1982152--1982194	19	2.2	20	91	4	70	41	0	4	53	1.21
1987273--1987309	12	3.1	12	96	0	65	29	27	18	24	1.98
1990506--1990540	17	2.1	17	88	0	52	54	5	0	40	1.24
1999244--1999271	5	5.6	5	100	0	56	21	0	0	78	0.75
2001653--2001807	59	2.6	59	86	6	224	20	3	20	55	1.57
2001751--2001828	33	2.3	33	80	6	84	20	1	20	57	1.48
2003205--2003261	22	2.6	22	75	10	71	29	7	17	45	1.75
2003207--2003496	44	6.5	45	73	8	218	33	8	14	43	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2003308--2003529	89	2.5	87	83	8	234	33	9	15	40	1.80
2003336--2003496	43	3.7	43	77	6	171	32	8	16	41	1.79
2003734--2003864	61	2.1	61	85	0	181	32	19	7	39	1.80
2003914--2003959	18	2.6	18	82	0	56	30	19	17	32	1.95
2003991--2004025	18	2.0	17	88	5	52	34	14	14	37	1.86
2010576--2010642	27	2.7	25	74	14	68	50	1	1	46	1.19
2018130--2018165	17	2.1	17	94	0	63	66	0	8	25	1.19
2018851--2018899	25	2.0	25	84	8	64	55	6	4	34	1.44
2020066--2020105	21	1.9	22	90	10	66	57	0	0	42	0.98
2022638--2022683	20	2.4	19	85	3	56	17	2	6	73	1.14
2022821--2022879	3	19.7	3	100	0	118	33	0	0	66	0.92
2024486--2024707	84	2.7	84	78	2	232	39	17	13	29	1.88
2025143--2025191	24	2.0	24	100	0	98	16	16	8	59	1.60
2034332--2034365	15	2.3	15	94	0	59	47	32	11	8	1.71
2041928--2041980	20	2.5	20	72	6	52	16	22	22	37	1.94
2043060--2043266	60	3.5	59	79	6	199	38	15	6	39	1.74
2043060--2043274	57	3.7	57	79	8	211	37	14	6	41	1.72
2043316--2043353	3	13.0	3	94	5	69	65	0	0	34	0.93
2043584--2043618	17	1.9	17	88	11	52	0	51	0	48	1.00
2044128--2044167	12	3.3	12	85	0	53	82	0	5	12	0.82
2044140--2044359	17	13.2	16	72	19	93	67	1	3	27	1.15
2044142--2044314	3	54.7	3	71	21	90	65	0	4	30	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2044195--2044323	4	34.5	4	73	13	57	65	0	3	30	1.13
2044169--2044323	42	3.7	41	79	15	149	63	0	3	31	1.17
2044139--2044354	21	10.4	20	70	22	94	67	1	3	27	1.16
2044298--2044376	21	3.8	20	75	20	56	73	5	2	18	1.13
2044313--2044384	8	9.2	8	75	18	55	73	6	2	16	1.17
2044571--2045120	41	13.1	41	80	6	421	38	19	16	24	1.92
2044571--2045118	125	4.4	125	83	7	583	39	19	16	24	1.92
2044571--2045113	169	3.2	163	80	8	558	39	19	16	24	1.92
2050831--2051099	60	4.6	59	81	6	278	38	15	6	39	1.73
2050831--2051099	118	2.3	119	82	6	298	38	15	6	39	1.73
2051131--2051246	4	28.8	4	72	20	59	71	1	2	24	1.08
2051131--2051252	34	3.6	33	77	9	131	72	2	2	22	1.09
2052083--2052117	12	2.9	12	86	0	52	82	0	2	14	0.77
2052076--2052129	24	2.3	24	80	3	65	75	0	7	16	1.01
2052092--2052301	3	66.7	3	71	22	114	65	0	4	30	1.11
2052145--2052301	40	3.8	43	79	17	149	65	0	3	30	1.10
2052097--2052301	31	6.5	31	74	22	130	65	0	4	30	1.12
2052152--2052375	31	7.4	29	69	22	76	67	1	3	27	1.15
2052131--2052343	74	2.8	73	79	11	191	65	0	3	30	1.15
2052787--2052836	21	2.5	20	78	15	57	20	4	6	70	1.25
2052867--2052937	3	24.3	3	80	13	78	28	1	2	67	1.13
2053009--2053046	3	12.7	3	100	0	76	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2054123--2054165	16	2.8	16	86	13	63	37	0	0	62	0.95
2054543--2054707	82	2.0	82	92	0	276	28	7	10	53	1.61
2055020--2055069	22	2.2	23	82	10	59	54	0	4	42	1.19
2055047--2055090	17	2.6	17	77	0	52	50	2	0	47	1.13
2055246--2055282	19	1.9	19	88	0	56	40	2	2	54	1.29
2057395--2057439	22	2.0	22	100	0	90	22	22	4	51	1.66
2057593--2057634	2	21.0	2	95	0	75	47	0	0	52	1.00
2058817--2058859	19	2.2	20	84	12	54	41	0	4	53	1.21
2059478--2059531	3	18.0	3	100	0	108	66	0	0	33	0.92
2059536--2059604	3	23.0	3	100	0	138	33	0	0	66	0.92
2059724--2059749	13	2.0	13	100	0	52	23	15	15	46	1.83
2060145--2060262	52	2.3	52	86	2	157	43	9	22	24	1.83
2061165--2061206	11	3.8	11	93	0	75	21	0	28	50	1.49
2061164--2061206	22	2.0	22	100	0	86	23	0	27	48	1.51
2061231--2061353	52	2.4	52	88	2	176	44	9	21	23	1.82
2061243--2061387	52	2.8	51	83	6	166	42	8	22	26	1.81
2061919--2062020	25	4.1	26	72	14	81	38	4	33	23	1.76
2061919--2062016	50	2.0	50	83	4	126	37	5	32	24	1.77
2062262--2062301	11	3.6	11	89	0	62	20	0	30	50	1.49
2062329--2062483	52	3.0	51	76	9	152	45	9	19	25	1.79
2063055--2063110	25	2.2	25	81	6	69	39	3	33	23	1.72
2063359--2063400	11	3.8	11	90	0	66	23	0	26	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2063358--2063400	22	2.0	22	95	0	77	25	0	25	48	1.51
2063425--2063581	52	3.0	51	80	5	181	44	7	21	26	1.78
2064151--2064206	25	2.2	26	81	6	71	42	3	30	23	1.71
2064455--2064496	11	3.8	11	90	0	66	23	0	26	50	1.50
2064454--2064496	22	2.0	22	95	0	77	25	0	25	48	1.51
2064521--2064677	52	3.0	52	86	3	201	42	7	23	26	1.81
2065236--2065293	25	2.3	25	88	5	91	41	3	31	24	1.71
2065197--2065293	50	1.9	50	81	4	115	39	7	29	23	1.82
2065540--2065571	11	2.9	11	95	0	55	15	0	31	53	1.43
2065627--2065751	52	2.4	52	89	2	180	38	8	24	28	1.85
2066873--2066908	18	1.9	19	88	5	56	47	5	2	44	1.41
2066905--2066947	19	2.2	20	84	12	54	39	2	4	53	1.34
2067941--2067977	18	2.0	19	89	5	58	27	8	5	59	1.48
2071329--2071371	20	2.1	21	83	12	54	55	4	0	39	1.20
2073106--2073182	36	2.2	35	90	6	120	45	2	2	49	1.29
2074287--2074337	23	2.3	23	82	3	59	33	13	3	49	1.61
2074749--2074797	18	2.8	17	87	6	71	32	0	0	67	0.91
2075426--2075460	18	1.9	18	88	0	52	57	0	0	42	0.99
2075423--2075461	20	1.9	21	84	5	53	58	0	0	41	0.98
2076115--2076157	19	2.2	20	83	4	52	51	4	2	41	1.35
2076285--2076350	19	3.5	19	72	2	62	46	1	1	50	1.20
2076320--2076349	15	1.9	16	93	6	53	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2076334--2076374	22	1.9	21	90	5	64	48	2	0	48	1.14
2078390--2078438	20	2.4	20	80	12	55	38	2	0	59	1.09
2078920--2078966	20	2.3	20	82	7	60	40	8	0	51	1.33
2080240--2080272	17	1.9	17	93	0	57	9	9	3	78	1.05
2081018--2081126	9	11.7	9	71	14	51	56	3	0	38	1.23
2081177--2081353	86	2.1	86	100	0	354	64	3	3	28	1.25
2081463--2081527	33	2.0	33	85	11	89	60	1	4	33	1.27
2083179--2083407	114	2.0	113	88	4	336	26	14	14	44	1.83
2089830--2089859	12	2.5	12	88	0	51	60	0	0	40	0.97
2092604--2092637	16	2.1	16	88	0	50	17	0	5	76	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117