genome.fa.s101.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  61  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11322989--11323119	41	3.2	41	80	6	156	36	8	8	46	1.64
11322989--11323099	42	2.7	42	85	4	154	36	7	9	47	1.63
11323454--11323547	47	2.0	47	95	0	170	37	8	8	45	1.65
11324034--11324063	14	2.1	14	93	0	51	20	13	36	30	1.90
11328528--11328614	3	29.3	3	86	6	124	32	2	1	64	1.13
11329468--11329508	18	2.3	18	87	8	57	14	19	2	63	1.41
11329468--11329528	19	3.3	18	81	9	61	16	14	3	65	1.40
11329484--11329542	19	3.1	19	80	7	66	20	8	1	69	1.23
11329468--11329535	18	3.7	18	73	7	55	16	13	2	67	1.34
11330351--11330450	46	2.2	46	88	0	146	21	12	3	64	1.40
11330839--11330871	12	2.8	12	82	17	50	3	6	6	84	0.84
11338444--11338479	17	2.1	17	94	0	63	27	11	19	41	1.85
11339323--11339426	55	1.9	53	84	7	138	60	13	13	12	1.59
11340250--11340460	114	1.9	114	82	2	271	22	26	15	36	1.93
11340779--11340901	3	41.3	3	78	11	128	33	4	0	61	1.20
11341372--11341396	9	2.8	9	100	0	50	12	0	16	72	1.13
11341801--11341841	18	2.3	18	87	8	57	19	17	0	63	1.31
11342032--11342148	50	2.3	50	94	0	198	33	11	15	40	1.82
11343230--11343342	3	38.3	3	82	10	135	65	0	3	30	1.09
11344034--11344169	69	2.0	70	83	4	177	36	11	22	30	1.90
11344159--11344214	18	3.2	18	92	2	87	32	16	16	35	1.90
11344147--11344214	35	1.9	35	82	8	84	33	13	16	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11344169--11344218	18	2.8	18	96	0	91	36	16	12	36	1.85
11344107--11344352	87	2.7	87	79	5	249	39	13	17	30	1.88
11344257--11344310	26	2.0	27	89	3	83	31	18	22	27	1.97
11345914--11345987	36	2.0	37	89	7	114	64	5	5	24	1.36
11347510--11347840	168	2.0	167	91	0	536	37	10	21	30	1.88
11347882--11347906	11	2.3	11	100	0	50	92	0	8	0	0.40
11348730--11348785	2	28.0	2	100	0	112	0	50	0	50	1.00
11351897--11352231	165	2.0	165	92	1	564	38	18	17	26	1.92
11357638--11357769	67	2.0	67	81	3	158	61	12	12	12	1.57
11358281--11358472	40	4.7	41	81	3	174	33	14	19	33	1.91
11358942--11359165	114	1.9	115	80	6	256	25	22	12	38	1.90
11358990--11359312	114	2.8	114	77	1	317	26	21	12	38	1.89
11359660--11359749	12	7.4	12	73	11	51	27	3	2	66	1.19
11359659--11359707	3	16.3	3	82	0	62	32	2	4	61	1.26
11359720--11359753	17	2.0	17	94	0	59	14	0	0	85	0.60
11359721--11359754	10	3.2	10	91	8	50	11	0	0	88	0.52
11360686--11360985	121	2.5	120	80	3	314	18	25	14	42	1.87
11361038--11361176	37	3.8	37	74	7	122	19	20	12	48	1.80
11361107--11361193	37	2.4	37	80	0	102	21	24	10	43	1.83
11361153--11361371	73	3.0	74	82	4	246	24	22	10	42	1.85
11361165--11361303	37	3.8	37	68	14	99	25	24	8	41	1.83
11361131--11361371	74	3.3	73	79	8	222	24	22	9	43	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11361519--11361640	3	42.7	3	73	18	73	37	1	3	57	1.25
11363682--11363741	21	2.8	20	78	14	59	25	18	1	55	1.52
11367729--11367781	27	1.9	27	85	11	72	41	1	5	50	1.36
11369364--11369391	6	4.7	6	100	0	56	53	0	0	46	1.00
11369503--11369545	22	2.0	20	82	8	50	53	6	0	39	1.28
11369980--11370019	19	2.1	19	90	0	62	70	15	0	15	1.18
11370268--11370309	20	2.1	20	95	0	75	19	69	0	11	1.19
11372489--11372537	24	2.2	22	76	16	55	30	10	14	44	1.78
11379695--11379833	41	3.4	41	74	5	120	35	9	8	46	1.67
11380999--11381075	35	2.2	37	90	6	124	61	3	6	28	1.39
11385197--11385223	7	3.9	7	100	0	54	11	0	0	88	0.50
11385455--11385493	3	13.0	3	94	0	69	30	0	2	66	1.05
11385517--11385559	17	2.5	17	100	0	86	34	0	11	53	1.37
11385455--11385579	9	14.4	9	74	11	73	32	2	8	57	1.41
11386403--11386468	5	13.0	5	80	19	75	24	1	0	74	0.91
11386415--11386484	21	3.3	21	79	18	83	21	0	1	77	0.85
11386411--11386475	16	3.9	17	84	10	89	23	0	0	76	0.78
11386410--11386484	17	4.6	15	81	14	69	21	0	1	77	0.85
11386411--11386475	33	2.1	33	86	11	93	23	0	0	76	0.78
11386574--11386608	11	3.2	11	91	0	52	88	2	2	5	0.68
11390864--11390902	20	2.0	19	90	5	60	84	2	12	0	0.72
11391894--11392198	121	2.5	121	78	3	283	18	24	15	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11392593--11392743	3	51.0	3	69	19	59	31	3	6	58	1.42
11393000--11393049	20	2.5	20	87	3	75	24	0	26	50	1.50
11393464--11393512	16	2.7	19	78	15	59	32	0	6	61	1.21
11393476--11393653	63	2.8	60	80	14	162	27	2	4	65	1.26
11393972--11394025	25	2.2	24	83	6	63	35	5	18	40	1.74
11394042--11394104	31	2.0	31	87	0	90	28	22	23	25	1.99
11394165--11394202	20	1.9	20	94	0	67	31	26	18	23	1.97
11395650--11395700	20	2.8	17	82	14	57	21	0	1	76	0.88
11400036--11400081	22	2.1	22	100	0	92	28	8	8	54	1.61
11408160--11408197	6	6.3	6	88	11	60	15	0	50	34	1.45
11418722--11418832	41	2.7	41	77	6	116	36	9	8	45	1.67
11419193--11419278	41	2.1	41	82	4	102	36	12	9	41	1.75
11420055--11420122	36	1.9	36	96	3	129	61	5	4	27	1.38
11427110--11427154	12	3.7	11	85	14	54	0	17	0	82	0.68
11427111--11427143	6	5.5	6	86	13	50	0	15	0	84	0.61
11427112--11427147	16	2.2	17	90	5	56	0	16	0	83	0.65
11427314--11427347	17	2.0	17	94	0	59	61	23	2	11	1.43
11427343--11427394	21	2.5	21	77	20	56	69	9	3	17	1.31
11427751--11427792	11	3.9	11	90	3	59	57	0	42	0	0.99
11428479--11428520	22	1.9	22	85	9	59	76	0	11	11	1.03
11429463--11429499	15	2.5	15	86	0	56	81	0	2	16	0.81
11434672--11434727	27	2.1	27	93	0	94	39	14	14	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11435124--11435224	42	2.4	42	88	3	141	24	8	21	44	1.81
11435000--11435361	178	2.0	179	87	2	523	29	11	16	42	1.84
11435174--11435453	137	2.0	137	93	1	481	29	11	15	43	1.81
11435473--11435772	99	3.0	98	83	1	321	26	12	19	41	1.87
11435542--11435801	99	2.6	100	83	4	287	24	15	19	40	1.90
11436053--11436091	7	5.6	7	90	9	62	0	15	0	84	0.62
11436053--11436091	20	1.9	21	94	5	71	0	15	0	84	0.62
11436266--11436320	21	2.6	21	85	5	67	69	14	7	9	1.36
11436355--11436408	23	2.4	23	84	3	74	75	24	0	0	0.80
11436944--11436986	23	1.9	22	85	4	59	23	6	2	67	1.27
11438683--11438770	41	2.1	41	83	4	106	34	11	11	43	1.77
11441135--11441519	190	2.0	189	86	3	531	38	10	20	30	1.87
11442842--11442877	18	2.0	18	88	0	54	61	0	0	38	0.96
11442876--11442905	15	2.0	15	100	0	60	60	0	0	40	0.97
11451249--11451286	18	2.1	18	90	5	58	65	5	0	28	1.14
11451213--11451293	29	2.9	28	79	3	90	62	9	0	27	1.26
11451261--11451300	19	2.2	18	86	4	53	65	10	2	22	1.35
11451279--11451355	28	2.8	28	77	13	79	61	7	3	27	1.42
11451279--11451342	29	2.2	29	81	13	78	62	7	3	26	1.38
11451366--11451418	20	2.7	20	91	5	81	54	11	0	33	1.36
11451365--11451423	10	5.8	10	71	16	50	52	10	0	37	1.35
11451609--11451649	18	2.2	19	83	16	59	70	2	2	24	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11451679--11451721	16	2.8	15	86	6	59	74	6	2	16	1.14
11452156--11452195	20	2.0	20	95	0	71	45	2	2	50	1.28
11452197--11452232	10	3.6	10	88	0	54	36	0	13	50	1.43
11453697--11453741	3	15.0	3	100	0	90	33	0	0	66	0.92
11455031--11455098	20	3.4	19	80	13	75	7	16	0	76	1.00
11455047--11455098	20	2.7	20	87	3	79	3	15	0	80	0.85
11455047--11455106	20	3.0	20	80	4	77	3	16	0	80	0.85
11467952--11467999	23	2.1	22	96	3	87	27	12	8	52	1.67
11469674--11469709	14	2.7	14	91	8	58	50	0	5	44	1.25
11470448--11470486	2	20.0	2	94	5	71	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117