genome.fa.s101.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  63  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11621028--11621092	34	1.9	34	87	0	94	53	10	13	21	1.70
11621028--11621102	34	2.2	34	82	0	87	54	12	13	20	1.70
11621167--11621246	35	2.3	35	76	6	83	61	12	11	15	1.57
11621750--11621789	21	1.9	21	90	10	64	30	17	17	35	1.93
11623773--11623840	29	2.3	28	82	9	75	11	14	0	73	1.10
11623779--11623905	18	7.1	18	71	11	57	8	17	0	74	1.07
11623802--11623861	17	3.6	16	74	17	50	8	20	0	71	1.11
11623832--11623909	10	8.0	10	70	22	51	6	17	0	75	1.00
11623820--11623908	37	2.4	36	80	16	101	6	17	0	75	1.02
11625030--11625072	13	3.3	13	78	12	52	0	16	0	83	0.64
11625037--11625071	17	2.1	17	94	5	63	0	14	0	85	0.59
11625856--11625883	11	2.5	11	100	0	56	39	28	17	14	1.89
11626096--11626140	12	3.7	12	90	3	63	84	2	2	11	0.80
11626534--11626642	20	5.4	20	76	11	80	44	41	4	10	1.59
11626511--11626663	40	3.8	39	70	12	96	43	39	5	12	1.65
11626669--11626710	18	2.3	18	84	8	50	40	33	4	21	1.74
11627630--11628103	120	4.0	119	76	6	413	37	12	12	38	1.81
11627670--11628063	160	2.5	159	77	9	406	37	12	12	38	1.80
11627630--11628095	80	5.8	80	73	7	340	37	12	12	38	1.80
11627630--11628141	40	12.8	40	76	6	279	36	11	12	38	1.80
11627617--11628185	40	14.2	40	73	7	127	35	11	13	39	1.81
11628278--11628321	22	2.0	22	86	8	63	36	18	9	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11628870--11629009	49	2.9	48	81	4	163	37	9	13	40	1.77
11629054--11629094	2	21.5	2	82	9	50	56	2	41	0	1.13
11629054--11629094	19	2.2	19	90	0	64	56	2	41	0	1.13
11629309--11629333	12	2.1	12	100	0	50	24	24	24	28	2.00
11631481--11631543	21	3.0	21	79	2	56	47	39	3	9	1.52
11633063--11633102	3	13.3	3	100	0	80	32	0	0	67	0.91
11642308--11642367	21	2.8	21	85	7	68	50	0	3	46	1.18
11643847--11644050	102	2.0	102	91	0	327	31	18	25	25	1.97
11655893--11655963	37	1.9	37	88	0	106	46	23	14	15	1.82
11663157--11663199	18	2.3	19	88	8	70	37	0	0	62	0.95
11663903--11663942	3	13.3	3	100	0	80	67	0	0	32	0.91
11670125--11670166	20	2.1	20	90	0	66	38	9	9	42	1.70
11677834--11677872	18	2.2	18	95	0	69	74	5	7	12	1.20
11678501--11678727	49	4.6	49	81	4	240	31	14	14	38	1.87
11678501--11678767	100	2.7	98	80	6	272	31	13	14	39	1.86
11679549--11679597	25	2.0	25	88	8	73	36	12	12	38	1.80
11694063--11694096	3	11.7	3	87	6	52	0	70	0	29	0.87
11694060--11694102	9	4.9	9	82	5	52	2	72	0	25	0.97
11696974--11697002	14	2.0	15	93	6	51	37	20	20	20	1.94
11699391--11699593	102	2.0	103	91	0	327	33	13	18	34	1.90
11701510--11701539	15	1.9	16	93	6	53	60	3	6	30	1.39
11703869--11703952	40	2.1	40	97	0	159	48	13	11	26	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11705780--11705839	19	3.0	20	74	16	61	73	1	3	21	1.07
11709563--11709631	18	3.7	19	73	13	56	52	10	2	34	1.50
11709668--11709728	19	3.3	19	76	17	74	57	11	6	24	1.57
11709683--11709763	16	5.0	16	69	19	53	54	11	6	28	1.59
11709669--11709745	36	2.1	36	81	9	86	59	7	5	27	1.46
11709814--11709877	20	3.2	20	67	20	60	54	12	3	29	1.53
11709809--11709906	41	2.4	41	82	3	126	56	10	4	29	1.51
11709861--11709902	21	2.0	22	85	4	59	61	7	2	28	1.35
11709856--11709977	53	2.3	53	94	2	210	58	7	4	30	1.44
11709765--11709992	94	2.4	94	76	5	230	56	10	5	28	1.55
11710002--11710127	20	6.4	20	73	9	98	51	9	7	31	1.61
11710003--11710096	40	2.3	40	80	3	109	51	9	8	30	1.65
11710103--11710165	32	1.9	33	83	3	83	50	7	6	34	1.57
11710146--11710195	19	2.5	20	83	6	66	46	10	8	36	1.67
11711116--11711334	43	5.1	43	80	6	248	38	18	13	29	1.89
11718967--11718999	16	2.1	16	100	0	66	57	18	0	24	1.40
11735503--11735562	24	2.5	24	81	5	68	36	0	10	53	1.35
11737031--11737071	19	2.2	19	100	0	82	24	48	14	12	1.78
11737238--11737289	17	3.2	16	81	13	61	65	0	0	34	0.93
11737238--11737289	16	3.2	16	81	8	52	65	0	0	34	0.93
11739209--11739268	29	2.0	30	84	9	79	48	1	3	46	1.28
11740440--11740469	14	2.1	14	93	0	51	50	0	3	46	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11741138--11741180	15	2.9	14	89	6	59	37	2	0	60	1.10
11741276--11741335	18	3.4	18	68	21	54	30	0	3	66	1.07
11741746--11741834	23	3.7	23	69	14	63	53	3	2	40	1.30
11741699--11741952	132	1.9	131	81	9	304	54	3	3	37	1.36
11741877--11741929	22	2.3	23	90	9	81	50	1	3	43	1.30
11741877--11741930	24	2.2	24	84	12	67	51	1	3	42	1.30
11750447--11750476	15	2.1	15	93	6	53	23	6	23	46	1.75
11751620--11751945	58	5.7	57	82	4	388	37	14	5	42	1.70
11751620--11751938	114	2.8	113	86	3	426	37	14	5	41	1.71
11751622--11751967	115	3.0	111	80	6	329	37	13	6	43	1.69
11751968--11752037	11	6.5	10	80	15	77	81	2	2	12	0.91
11751963--11752035	6	12.7	6	74	17	66	80	2	2	13	0.93
11751963--11752034	17	4.2	17	80	8	76	80	2	2	13	0.93
11751958--11752087	17	7.9	16	70	20	63	74	3	3	19	1.08
11752357--11752396	20	1.9	20	90	10	62	0	42	0	57	0.98
11753028--11753062	17	2.0	18	88	5	54	71	0	2	25	1.00
11753092--11753160	26	2.6	28	84	6	90	75	0	2	21	0.93
11753092--11753152	6	9.1	7	86	13	69	75	0	1	22	0.89
11753094--11753151	14	4.7	12	80	17	66	75	0	1	22	0.89
11753033--11753153	13	9.1	13	71	15	70	74	0	4	20	1.00
11755703--11755731	2	14.5	2	100	0	58	51	0	48	0	1.00
11756142--11756216	32	2.3	32	80	13	84	50	6	0	42	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11760996--11761679	93	7.7	91	71	13	348	46	13	6	33	1.69
11760929--11761675	185	4.2	180	72	13	429	45	13	7	33	1.71
11762044--11762102	18	3.3	18	75	13	68	15	10	15	59	1.61
11762046--11762102	17	3.3	17	75	22	64	14	10	15	59	1.60
11762054--11762115	18	3.5	17	76	12	63	19	14	16	50	1.79
11762016--11762114	35	2.8	35	81	3	110	17	12	16	54	1.71
11762042--11762238	94	2.1	96	85	1	263	19	16	16	47	1.83
11762134--11762190	17	3.3	17	72	18	55	12	12	19	56	1.67
11762827--11762871	10	4.6	10	88	5	74	37	22	0	40	1.54
11762827--11762871	19	2.3	20	92	3	74	37	22	0	40	1.54
11764459--11764497	20	2.0	20	89	0	60	0	20	2	76	0.90
11766552--11766610	21	2.8	21	82	7	75	47	3	16	32	1.64
11766681--11766734	18	2.9	18	78	10	65	12	1	37	48	1.53
11769667--11769706	14	3.0	14	85	7	57	0	15	0	85	0.61
11772343--11772481	37	3.8	36	75	11	120	39	9	20	30	1.84
11774224--11774280	21	2.7	20	74	20	53	36	10	1	50	1.47
11774784--11774897	12	8.9	13	76	12	85	17	0	31	50	1.46
11774927--11774993	19	3.5	19	79	6	55	20	1	34	43	1.61
11779233--11779271	18	2.1	18	85	4	51	74	5	12	7	1.20
11789164--11789199	6	6.0	6	87	12	56	83	0	2	13	0.76
11789163--11789197	18	1.9	18	100	0	70	85	0	2	11	0.69
11789449--11789474	12	2.2	12	100	0	52	92	0	7	0	0.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11789942--11790052	51	2.3	48	80	14	115	32	7	12	47	1.69
11790237--11790281	16	2.6	16	86	13	54	73	11	2	13	1.19
11790260--11790327	15	4.6	14	74	18	57	80	5	5	7	1.01
11790259--11790326	33	2.2	30	82	10	75	82	4	5	7	0.95
11790314--11790347	17	1.9	17	94	5	59	70	5	5	17	1.28
11790443--11790482	20	2.1	19	86	9	55	50	2	0	47	1.14
11800533--11800592	29	2.1	29	87	0	84	48	8	6	36	1.60
11802141--11802198	29	2.0	28	83	3	71	36	5	1	56	1.32
11805324--11805386	21	2.9	21	81	9	72	30	23	1	44	1.63
11809382--11809406	13	1.9	13	100	0	50	32	4	0	64	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117