genome.fa.s101.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  40  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7246363--7246428	21	3.1	21	76	10	71	40	10	3	45	1.54
7246427--7246522	46	2.1	45	81	12	108	37	4	7	51	1.49
7246587--7246625	11	3.5	11	78	0	51	33	7	7	51	1.59
7246594--7246645	22	2.4	22	83	6	61	36	7	7	48	1.61
7247012--7247073	22	2.8	22	82	0	79	43	4	6	45	1.51
7247179--7247302	41	3.0	41	78	9	117	38	7	4	50	1.49
7247220--7247526	22	14.2	22	70	8	110	34	8	4	52	1.51
7247400--7247460	21	2.7	23	75	17	56	37	6	3	52	1.44
7247220--7247495	22	12.8	22	69	11	113	34	8	3	52	1.51
7247584--7247663	11	7.2	11	70	2	52	36	8	3	51	1.51
7247571--7247677	22	4.8	22	75	6	74	35	7	5	51	1.54
7247761--7247865	22	4.8	22	75	8	72	38	6	3	51	1.46
7248436--7248486	26	2.0	27	85	14	72	66	5	0	27	1.14
7253361--7253388	1	28.0	1	100	0	56	100	0	0	0	0.00
7255055--7255085	2	15.5	2	100	0	62	51	0	0	48	1.00
7265776--7265888	9	13.6	8	71	18	63	68	2	15	14	1.33
7265809--7265888	9	9.0	9	73	5	65	67	2	17	12	1.33
7265781--7265839	29	2.0	29	83	6	75	72	1	13	11	1.19
7267371--7267429	18	3.3	18	82	0	82	40	13	13	32	1.84
7267717--7267760	11	4.0	11	81	0	52	25	2	2	70	1.10
7268287--7268357	27	2.6	27	90	0	115	59	0	30	9	1.30
7268618--7268680	25	2.7	23	85	7	74	19	4	1	74	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7268644--7268695	22	2.4	22	80	6	61	19	5	1	73	1.14
7271555--7271654	21	4.8	20	77	10	85	39	10	12	39	1.76
7272015--7272154	44	3.2	44	77	8	115	38	8	7	45	1.64
7272015--7272154	22	6.4	22	76	7	97	38	8	7	45	1.64
7272175--7272219	22	2.1	21	84	12	56	42	6	8	42	1.62
7272229--7272312	22	3.9	22	72	9	73	40	11	5	41	1.66
7272298--7272340	22	2.0	22	86	9	61	30	9	6	53	1.59
7272400--7272446	3	16.3	3	82	8	62	29	2	0	68	1.02
7272636--7272685	23	2.2	23	89	3	75	42	16	18	24	1.89
7273982--7274027	21	2.2	21	85	11	60	63	2	4	30	1.26
7274878--7274934	22	2.6	21	83	13	62	38	10	3	47	1.55
7274878--7274965	21	4.1	21	78	8	79	38	9	4	47	1.56
7274975--7275081	44	2.4	45	80	10	112	31	5	11	51	1.61
7274992--7275081	22	4.1	21	71	14	67	31	6	8	53	1.58
7275102--7275151	22	2.3	22	82	6	57	40	14	6	40	1.70
7275152--7275234	22	3.8	22	68	9	62	31	12	7	49	1.67
7275477--7275553	22	3.5	22	82	3	75	40	11	3	44	1.59
7275563--7275628	22	3.0	22	82	2	89	40	6	7	45	1.57
7275775--7275816	19	2.2	19	86	0	57	38	9	7	45	1.64
7275782--7276103	22	14.9	22	68	9	92	37	11	5	46	1.62
7275805--7276122	65	4.8	67	70	10	192	37	10	5	46	1.62
7275845--7276123	22	12.8	22	68	11	108	36	10	6	46	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7276152--7276241	44	2.0	44	80	4	101	42	3	6	47	1.46
7276181--7276251	22	3.3	22	74	2	63	39	5	7	47	1.54
7276275--7276367	22	4.2	22	68	13	57	36	6	6	50	1.54
7276376--7276464	22	4.1	22	73	9	76	35	12	3	48	1.58
7279278--7279305	2	14.0	2	100	0	56	0	0	50	50	1.00
7289176--7289220	20	2.2	20	84	7	56	62	2	0	35	1.08
7296727--7297715	373	2.7	371	89	3	1450	27	23	29	19	1.98
7297628--7297810	95	1.9	95	88	2	278	21	25	37	15	1.93
7298162--7298196	6	5.8	6	93	0	52	45	22	31	0	1.53
7300586--7300633	24	2.0	24	84	12	62	41	8	0	50	1.33
7301851--7301889	19	2.0	20	85	9	55	12	7	5	74	1.20
7305482--7305548	31	2.2	31	91	0	107	35	23	11	28	1.91
7316870--7316913	13	3.1	13	77	22	52	79	4	13	2	0.98
7317641--7317694	24	2.3	23	81	15	65	44	7	0	48	1.31
7320342--7320425	42	2.0	42	100	0	168	26	23	21	28	1.99
7320346--7320438	42	2.2	42	92	3	152	24	24	23	26	2.00
7334628--7334671	13	3.1	13	77	22	52	79	2	13	4	0.98
7335400--7335453	24	2.3	23	81	15	65	44	7	0	48	1.31
7335576--7335603	4	7.0	4	100	0	56	25	25	0	50	1.50
7340332--7340398	31	2.2	31	91	0	107	35	23	11	28	1.91
7352493--7352557	29	2.3	28	82	10	78	50	7	1	40	1.40
7354907--7354965	22	2.7	22	77	15	59	52	1	8	37	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7354907--7355004	47	2.1	48	82	5	119	54	3	8	34	1.46
7354929--7354990	25	2.4	25	86	2	79	56	3	6	33	1.41
7354948--7355004	22	2.6	21	75	8	60	57	3	7	31	1.42
7355534--7355972	22	20.0	22	66	15	86	49	4	8	37	1.55
7356032--7356358	22	14.6	22	72	12	139	44	6	8	40	1.61
7356114--7356179	11	6.1	11	74	10	55	40	1	7	50	1.40
7356114--7356175	21	2.9	21	83	7	72	41	1	6	50	1.38
7356229--7356291	11	5.7	11	75	3	56	52	4	3	39	1.38
7356297--7356365	22	3.2	21	82	12	77	43	7	13	36	1.71
7356331--7356372	22	2.0	21	85	4	57	45	4	16	33	1.69
7356616--7356667	22	2.4	22	86	0	77	46	3	11	38	1.59
7356845--7356968	11	11.3	11	69	10	74	49	7	5	37	1.54
7356823--7356972	66	2.3	66	82	9	173	47	9	6	37	1.60
7356750--7356972	22	10.1	22	73	9	107	45	8	7	37	1.64
7356833--7356974	44	3.2	43	77	5	133	47	8	5	38	1.57
7357197--7357262	22	3.0	22	75	4	62	43	4	9	42	1.56
7368339--7368369	3	10.3	3	92	0	53	38	29	32	0	1.57
7371228--7371273	10	4.9	10	82	12	53	84	13	0	2	0.71
7372535--7372568	12	2.8	12	86	0	50	44	0	41	14	1.45
7381107--7381276	84	2.0	84	98	0	331	39	15	11	32	1.84
7395356--7395405	9	5.4	9	76	21	50	62	0	0	38	0.96
7395426--7395474	18	2.7	18	74	3	53	57	0	0	42	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7395425--7395501	30	2.6	30	75	10	77	53	2	2	41	1.28
7409050--7409106	27	2.1	27	84	12	73	42	0	7	50	1.29
7410242--7410295	27	2.0	27	89	7	83	51	9	0	38	1.34
7417449--7417490	20	2.1	20	86	8	59	40	9	4	45	1.58
7419009--7419045	7	5.1	7	93	3	56	29	37	13	18	1.90
7424134--7424165	2	16.0	2	100	0	64	50	0	50	0	1.00
7426173--7426212	20	2.0	20	95	0	71	35	17	5	42	1.71
7435352--7435423	35	2.1	34	92	2	117	33	8	18	40	1.80
7436906--7436931	10	2.6	10	100	0	52	92	0	0	7	0.39
7437043--7437387	176	2.0	176	83	4	437	27	8	18	46	1.77
7442757--7442839	41	2.0	41	95	0	148	33	12	19	34	1.88
7446385--7446670	125	2.3	125	79	10	291	39	7	10	42	1.67
7446444--7446684	126	1.9	123	82	10	303	40	8	10	40	1.70
7449905--7449932	5	5.6	5	100	0	56	82	0	17	0	0.68
7452457--7452522	33	1.9	36	81	9	84	48	3	13	34	1.58
7453784--7453823	19	2.0	20	85	4	55	75	0	0	25	0.81
7453976--7454000	12	2.1	12	100	0	50	36	0	0	64	0.94
7454657--7454696	13	3.1	13	81	0	53	57	0	0	42	0.98
7454624--7454699	33	2.3	31	80	12	89	57	1	0	40	1.07
7457153--7457224	34	2.1	34	94	0	126	43	2	16	37	1.63
7460541--7460625	36	2.3	36	80	6	91	38	7	2	51	1.42
7473844--7473905	27	2.2	28	80	5	72	33	8	6	51	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7475756--7475828	31	2.4	31	76	4	76	53	6	31	8	1.57
7477510--7477546	13	2.8	13	83	0	56	72	2	0	24	0.97
7478335--7478384	3	17.3	3	87	8	77	72	0	0	28	0.86
7484399--7484465	14	4.5	15	78	12	75	38	2	2	55	1.31
7485951--7486022	29	2.4	29	84	9	92	55	0	0	44	0.99
7485963--7486036	29	2.6	29	83	12	84	54	0	0	45	1.00
7486369--7486426	28	2.1	28	83	0	71	44	1	1	51	1.21
7486371--7486437	20	3.4	19	75	17	66	46	2	1	49	1.26
7486744--7486783	21	1.9	21	100	0	80	45	10	0	45	1.37
7492666--7492699	17	1.9	18	88	5	52	64	0	11	23	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117