genome.fa.s101.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  41  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7495649--7495686	17	2.2	17	86	9	51	63	5	0	31	1.17
7496118--7496179	21	2.7	23	76	16	67	54	0	8	37	1.30
7496413--7496489	39	1.9	41	84	10	106	51	1	1	45	1.17
7497057--7497101	16	2.8	16	83	9	56	42	0	4	53	1.21
7497621--7497659	2	19.5	2	100	0	78	51	0	0	48	1.00
7499373--7499424	25	2.1	25	85	0	68	69	0	11	19	1.18
7499768--7499812	20	2.2	20	92	0	72	33	4	13	48	1.62
7499775--7499816	20	2.1	20	100	0	84	30	4	14	50	1.63
7499815--7499858	22	2.0	22	86	8	63	38	2	2	56	1.24
7500295--7500324	15	1.9	16	93	6	53	33	0	6	60	1.23
7500329--7500353	13	1.9	13	100	0	50	72	0	0	28	0.86
7501448--7501901	123	3.6	124	85	5	529	26	31	18	22	1.97
7502598--7502635	19	2.0	19	100	0	76	42	21	10	26	1.85
7506430--7506464	17	2.1	17	88	0	52	34	0	14	51	1.42
7507164--7507200	18	2.1	18	90	5	58	56	0	10	32	1.34
7518018--7518057	8	5.1	8	84	3	55	40	0	0	60	0.97
7526845--7526869	2	12.5	2	100	0	50	52	0	0	48	1.00
7527159--7527202	22	2.0	22	81	4	52	38	6	11	43	1.67
7530294--7530493	101	2.0	100	92	1	328	21	15	19	45	1.86
7531205--7531282	29	2.7	29	82	13	97	37	1	3	57	1.25
7531369--7531522	77	2.0	77	97	0	290	38	4	14	42	1.67
7531542--7531582	20	2.0	20	85	0	55	34	2	12	51	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7531759--7531805	23	2.0	23	83	0	58	46	6	0	46	1.28
7534297--7534333	7	5.4	7	81	18	51	59	0	0	40	0.97
7534283--7534333	13	3.5	15	80	20	56	56	0	1	41	1.10
7535835--7535878	3	14.7	3	100	0	88	68	0	0	31	0.90
7535999--7536056	29	2.0	30	82	3	73	62	20	0	17	1.33
7536013--7536115	29	3.5	29	79	11	102	53	24	0	22	1.46
7536096--7536144	23	2.2	23	88	3	73	53	28	0	18	1.45
7536013--7536266	15	15.9	15	67	19	115	51	26	1	20	1.54
7537540--7537604	33	2.1	32	81	13	75	24	0	12	63	1.29
7539684--7539721	20	1.9	20	88	0	58	26	15	2	55	1.54
7541362--7541406	21	2.2	20	84	4	54	82	6	11	0	0.84
7541926--7541974	25	2.0	25	83	0	62	30	18	2	48	1.59
7541942--7541991	25	2.0	25	84	0	64	24	24	4	48	1.68
7542576--7542637	11	5.2	11	75	17	52	79	1	16	3	0.95
7543946--7544165	66	3.4	65	78	12	218	30	18	15	35	1.91
7543946--7544234	33	8.8	33	70	13	141	31	19	15	33	1.93
7543948--7544160	99	2.2	98	80	9	229	30	18	14	36	1.91
7544535--7544630	35	2.7	35	79	3	95	14	17	16	51	1.77
7544664--7544775	34	3.3	34	74	7	111	20	13	11	54	1.70
7544814--7544903	34	2.6	34	80	1	99	21	16	7	54	1.67
7545021--7545055	9	3.8	9	85	7	52	85	11	0	2	0.69
7546728--7546830	3	34.3	3	94	3	181	66	0	0	33	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7546994--7547064	15	4.7	15	74	11	56	53	23	0	22	1.46
7547011--7547072	15	4.3	14	79	6	61	51	29	0	19	1.47
7546979--7547067	31	2.9	30	78	6	90	51	24	1	22	1.55
7547068--7547153	31	2.7	31	78	7	93	52	30	2	15	1.55
7547109--7547182	15	4.9	15	76	3	67	54	25	1	18	1.52
7547616--7547749	68	2.0	67	82	4	162	35	11	16	36	1.85
7554237--7556082	462	4.0	462	96	0	3350	36	15	13	34	1.87
7556885--7558212	186	7.1	186	81	4	1427	33	15	10	39	1.82
7558711--7558769	28	2.1	28	83	0	73	27	5	20	47	1.71
7558769--7558825	25	2.3	25	84	0	69	26	7	24	42	1.80
7561284--7561316	16	2.1	16	88	11	50	27	0	3	69	1.03
7561208--7561431	111	2.0	111	99	0	439	21	12	13	52	1.72
7561390--7561433	9	4.7	10	86	13	51	27	0	6	65	1.17
7561395--7561459	16	4.1	15	76	9	67	29	0	3	67	1.05
7562404--7562528	4	31.0	4	73	22	68	20	1	3	74	1.04
7562397--7562529	16	8.3	15	72	18	81	19	2	3	75	1.05
7562457--7562529	32	2.3	31	90	6	112	16	1	0	82	0.75
7562550--7562925	113	3.4	113	94	4	667	46	7	11	35	1.68
7562550--7562925	55	6.7	55	94	4	634	46	7	11	35	1.68
7562725--7562814	27	3.2	27	62	20	67	43	5	14	36	1.69
7568044--7568499	41	11.1	41	89	6	665	22	16	23	37	1.93
7568044--7568499	83	5.6	80	89	7	659	22	16	23	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7568506--7568535	8	3.8	8	90	0	51	86	10	0	3	0.67
7568724--7568854	3	42.3	3	71	22	78	32	0	4	63	1.15
7568733--7568854	45	2.6	47	74	19	137	32	0	4	63	1.14
7569843--7569884	4	10.5	4	89	0	66	19	0	4	76	0.96
7569908--7569979	5	14.8	5	76	21	73	18	2	0	79	0.86
7569893--7569978	42	2.2	37	83	10	100	19	3	0	76	0.92
7569915--7569979	25	2.5	26	85	11	82	18	1	0	80	0.80
7569839--7569974	12	10.3	12	74	16	69	19	2	3	74	1.08
7569997--7570346	62	5.8	59	84	7	406	44	7	13	34	1.72
7570005--7570346	127	2.9	116	84	11	424	44	7	13	34	1.71
7570007--7570346	57	5.7	55	81	12	356	44	7	13	34	1.72
7570383--7570411	6	4.8	6	100	0	58	17	0	13	68	1.20
7571739--7571769	16	1.9	16	93	0	53	58	6	3	32	1.40
7580017--7580046	14	2.1	14	93	0	51	40	20	13	26	1.89
7580290--7580341	23	2.2	24	82	6	61	30	3	0	65	1.10
7580297--7580360	24	2.7	21	75	20	56	35	4	1	57	1.29
7582115--7582216	53	1.9	51	87	6	132	42	5	4	47	1.49
7583719--7583872	55	2.8	56	84	4	195	31	14	11	42	1.81
7583719--7583891	56	3.1	56	83	5	181	31	15	10	42	1.81
7583871--7583966	47	2.0	47	86	4	131	32	17	10	39	1.84
7591147--7591181	14	2.4	14	95	4	61	88	8	0	2	0.61
7592086--7592201	35	3.4	35	83	2	137	34	9	14	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7592475--7592903	147	2.9	146	83	1	520	23	12	20	42	1.87
7592622--7593150	244	2.2	246	85	2	688	25	12	20	42	1.87
7592773--7592975	99	2.1	97	82	3	237	23	13	21	41	1.89
7592863--7593419	147	3.8	147	84	2	694	24	13	21	41	1.88
7593245--7593339	48	2.0	49	85	6	131	25	11	20	43	1.85
7593293--7593521	99	2.4	95	80	5	273	21	14	24	39	1.91
7594358--7594419	20	3.3	18	78	10	54	66	11	3	19	1.37
7596438--7596471	5	7.0	5	93	6	61	20	0	0	79	0.73
7596439--7596469	9	3.3	9	91	8	53	19	0	0	80	0.71
7596438--7596471	14	2.3	15	95	5	61	20	0	0	79	0.73
7596479--7596552	10	7.4	10	78	7	62	83	4	5	6	0.89
7602953--7602977	13	1.9	13	100	0	50	88	0	0	12	0.53
7603709--7603752	20	2.2	20	88	4	63	43	2	29	25	1.67
7603895--7604009	35	3.3	35	77	7	112	35	12	13	39	1.81
7604317--7604525	42	4.9	41	80	7	170	24	11	20	43	1.86
7604495--7604603	42	2.6	42	83	0	119	23	12	23	39	1.90
7604680--7604786	42	2.5	42	78	3	108	22	13	22	42	1.88
7604442--7604918	189	2.5	187	84	3	598	24	13	20	41	1.88
7604836--7604943	43	2.4	43	82	14	121	25	8	20	46	1.78
7604722--7605166	148	3.0	146	81	4	509	23	13	20	42	1.88
7605026--7605239	99	2.2	99	85	1	277	23	16	21	38	1.93
7604883--7605385	246	2.0	247	85	2	681	23	13	21	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7605214--7605328	48	2.6	42	75	15	122	23	11	20	44	1.84
7605213--7605313	48	2.1	48	88	3	150	23	11	19	44	1.84
7605441--7605678	49	4.8	50	78	9	220	28	10	18	41	1.85
7605441--7605677	100	2.4	99	81	8	293	29	10	18	40	1.85
7607068--7607102	15	2.3	15	86	13	54	31	0	0	68	0.90
7607179--7607223	20	2.1	22	88	8	67	73	2	0	24	0.95
7612712--7613031	99	3.2	98	85	3	394	30	12	18	39	1.88
7612714--7614980	47	47.8	47	74	11	1385	32	12	18	37	1.88
7612709--7614988	93	24.1	93	76	9	1104	32	12	17	36	1.88
7613165--7613304	51	2.8	51	87	5	182	35	15	15	33	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117