genome.fa.s101.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  65  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12002762--12002818	15	3.9	14	74	17	53	70	5	1	22	1.17
12005770--12005808	16	2.4	16	84	12	53	56	5	17	20	1.60
12012517--12012561	18	2.4	19	85	7	56	68	0	31	0	0.89
12015858--12015957	48	2.0	48	84	5	128	34	14	17	35	1.89
12017724--12017764	2	20.5	2	84	0	55	41	2	4	51	1.36
12020560--12020594	11	3.1	11	95	4	61	45	25	0	28	1.54
12027194--12027304	10	10.9	10	72	10	73	57	0	0	41	1.05
12027196--12027253	19	2.9	20	82	7	64	56	0	0	43	0.99
12027194--12027309	20	5.7	20	78	4	106	58	0	0	39	1.10
12027198--12027322	62	2.0	61	84	4	162	59	2	0	37	1.16
12028418--12028552	10	13.3	10	68	14	80	44	2	2	50	1.29
12028423--12028494	11	6.8	11	74	15	55	44	2	2	50	1.31
12030560--12030603	16	2.7	17	72	13	56	59	9	4	27	1.48
12031253--12031310	25	2.3	25	100	0	116	32	27	13	25	1.94
12035807--12035872	31	2.1	31	88	5	98	40	19	9	30	1.83
12038430--12038454	10	2.5	10	100	0	50	8	28	24	40	1.83
12039293--12039331	20	2.0	20	90	10	62	23	0	23	53	1.46
12039340--12039384	18	2.4	19	85	7	56	68	0	31	0	0.89
12039551--12039682	67	2.0	67	93	0	228	32	11	13	42	1.80
12042689--12042788	48	2.0	48	84	5	128	34	14	17	35	1.89
12049490--12049541	21	2.5	21	84	3	70	51	1	0	46	1.12
12054446--12054541	9	9.7	9	71	16	57	64	2	1	32	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12054444--12054532	11	8.5	11	67	20	66	65	2	0	32	1.05
12054447--12054489	9	4.6	9	86	11	59	69	0	0	30	0.88
12054444--12054534	20	4.9	20	72	20	81	63	2	0	34	1.06
12054443--12054493	20	2.5	20	96	0	93	68	0	0	31	0.90
12055649--12055723	9	7.7	9	76	15	69	46	2	2	48	1.30
12055648--12055757	10	10.7	10	70	12	62	46	1	2	49	1.26
12055724--12055765	18	2.3	18	87	0	57	42	0	2	54	1.13
12055733--12055767	18	1.9	18	100	0	70	40	0	2	57	1.14
12060232--12060310	21	3.8	21	75	6	70	31	15	15	37	1.88
12060227--12060319	42	2.2	42	84	0	114	32	15	17	35	1.91
12060263--12060326	21	3.0	21	75	8	67	29	17	17	35	1.92
12060954--12061012	26	2.2	27	84	6	75	25	13	15	45	1.82
12060963--12061013	26	2.0	26	92	0	84	25	15	15	43	1.86
12061064--12061121	28	2.0	28	83	9	73	31	8	10	50	1.67
12064517--12064560	18	2.4	19	80	3	54	11	18	20	50	1.77
12071486--12071529	18	2.4	19	80	3	54	11	18	20	50	1.77
12073562--12073603	21	2.0	21	86	4	59	76	7	4	11	1.15
12074643--12074723	20	4.1	20	96	0	144	13	3	35	46	1.61
12074693--12074745	19	2.7	19	88	2	70	15	0	37	47	1.45
12074718--12074830	12	9.1	13	67	18	53	19	0	35	44	1.57
12074707--12074808	6	16.8	6	71	22	63	16	0	36	47	1.47
12074715--12074808	43	2.2	42	79	9	93	18	0	35	46	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12074637--12074796	20	8.4	19	81	7	112	15	1	36	46	1.56
12077085--12077301	42	5.2	42	75	6	167	42	12	15	28	1.84
12077087--12077238	84	1.8	81	83	6	198	44	13	13	28	1.81
12077618--12077710	37	2.5	37	87	0	123	45	12	15	26	1.82
12077634--12077690	20	3.0	20	69	23	59	47	12	17	22	1.81
12079347--12079430	25	3.6	24	70	20	70	4	21	0	73	1.01
12079343--12079401	19	3.1	19	88	9	77	3	27	0	69	1.04
12079727--12079753	14	1.9	14	100	0	54	14	0	0	85	0.61
12079932--12079978	8	5.8	8	78	14	51	0	12	10	76	1.02
12079927--12079978	27	2.0	25	85	7	68	1	13	9	75	1.14
12089338--12089439	50	2.0	50	86	3	143	38	19	10	31	1.86
12089776--12089857	35	2.5	34	82	11	91	32	20	15	30	1.94
12089881--12090120	33	7.5	31	74	9	124	29	18	17	35	1.93
12089756--12090056	66	4.6	64	73	7	185	30	18	17	32	1.95
12090033--12090152	33	3.6	33	80	3	125	32	16	14	36	1.89
12090243--12090493	33	7.6	33	75	9	181	31	19	14	34	1.92
12090648--12090706	10	5.7	10	80	13	66	1	16	1	79	0.89
12090648--12090706	11	5.7	10	78	11	57	1	16	1	79	0.89
12090658--12090699	14	2.9	14	89	6	66	2	16	0	80	0.81
12090660--12090703	15	2.8	16	86	3	63	2	15	0	81	0.78
12090650--12090707	29	2.0	29	83	6	73	1	17	1	79	0.90
12093292--12093336	15	3.1	15	78	15	58	0	8	6	84	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12093939--12093963	7	3.6	7	100	0	50	12	16	0	72	1.13
12096594--12096631	16	2.3	16	86	13	51	2	18	0	78	0.86
12096585--12096628	13	3.3	13	79	17	54	4	15	0	79	0.89
12096897--12096932	17	2.1	17	94	0	63	5	19	0	75	1.00
12101904--12101929	3	8.7	3	100	0	52	30	0	0	69	0.89
12108726--12108791	21	3.2	21	70	10	64	33	13	18	34	1.90
12110090--12110149	30	2.0	30	86	0	84	48	36	1	13	1.52
12114893--12114926	17	2.0	17	88	0	50	38	5	11	44	1.65
12117323--12117388	23	2.9	22	88	4	87	10	1	10	77	1.07
12117338--12117378	13	2.8	15	85	10	50	14	0	12	73	1.11
12122431--12122464	18	1.9	18	88	5	52	70	2	20	5	1.21
12126237--12126278	22	1.9	22	95	0	75	38	14	11	35	1.83
12126165--12126351	91	2.1	90	89	1	284	42	16	12	28	1.84
12126298--12126402	34	3.2	33	67	17	94	44	19	12	23	1.84
12126255--12126414	63	2.4	63	85	6	212	41	16	11	29	1.84
12135233--12135274	21	2.0	21	95	0	75	57	2	19	21	1.52
12135889--12135982	25	3.8	25	85	4	120	37	5	34	23	1.78
12136291--12136435	52	2.8	51	85	4	200	42	6	23	28	1.78
12137130--12137180	2	25.5	2	100	0	102	50	0	49	0	1.00
12137534--12137563	16	1.9	15	93	6	51	0	10	0	90	0.47
12137534--12137563	15	2.0	15	93	0	51	0	10	0	90	0.47
12138278--12138318	21	2.1	19	86	9	55	73	0	4	21	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12141372--12141402	15	2.1	15	93	0	53	51	0	0	48	1.00
12142895--12142939	23	2.0	23	86	0	63	48	2	0	48	1.13
12150174--12150216	22	2.0	22	95	0	77	23	20	27	27	1.99
12152905--12152940	15	2.4	15	85	0	54	77	8	2	11	1.08
12156253--12156287	9	3.9	9	84	0	52	85	0	11	2	0.69
12157121--12157214	21	4.3	21	69	12	64	64	1	23	10	1.31
12157373--12157418	22	2.1	22	84	8	58	41	2	2	54	1.25
12159210--12159296	25	3.4	25	80	13	72	75	5	10	8	1.17
12159210--12159265	26	2.2	26	84	12	71	75	8	3	12	1.17
12159261--12159293	17	1.9	17	93	0	57	81	0	18	0	0.68
12159253--12159301	13	3.8	13	81	2	55	81	0	16	2	0.78
12160151--12160213	25	2.5	24	80	12	65	74	3	6	15	1.15
12161030--12161182	66	2.4	64	80	5	166	42	16	11	28	1.84
12161606--12161647	17	2.6	16	85	7	57	26	14	0	59	1.35
12161556--12161631	33	2.3	33	86	8	111	13	17	2	67	1.35
12165026--12165250	112	2.0	112	99	0	441	36	8	25	30	1.85
12167852--12167882	8	3.8	8	95	4	53	25	0	0	74	0.82
12169359--12169387	3	9.7	3	100	0	58	31	0	0	68	0.89
12169373--12169422	20	2.5	19	80	6	55	22	10	0	68	1.19
12169865--12169919	29	1.9	28	85	3	74	78	3	5	12	1.06
12169874--12169919	13	3.2	14	84	12	58	76	2	6	15	1.09
12170403--12170451	20	2.5	20	80	9	57	0	4	14	81	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12170403--12170447	11	4.4	11	81	13	51	0	4	15	80	0.87
12174679--12174733	27	2.0	27	96	0	101	50	3	5	40	1.43
12175650--12175911	146	1.8	145	82	7	343	33	16	12	37	1.85
12178516--12178564	26	2.0	25	84	8	64	36	4	10	48	1.56
12182770--12182825	14	3.7	15	77	13	53	57	5	0	37	1.22
12183267--12183311	13	3.4	13	87	6	72	35	6	0	57	1.25
12188902--12188930	10	2.7	11	89	10	51	0	10	0	89	0.48
12188905--12188930	10	2.6	10	100	0	52	0	7	0	92	0.39
12193194--12193286	48	2.0	46	87	4	132	25	34	8	31	1.86
12194062--12194132	35	2.1	33	82	12	81	40	33	5	19	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117