genome.fa.s101.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  12  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1196985--1197042	25	2.3	25	81	3	62	55	3	3	37	1.34
1197740--1197797	25	2.3	26	87	3	82	50	0	1	48	1.11
1201001--1201033	16	2.1	16	88	5	50	45	0	6	48	1.27
1201533--1201570	18	2.1	19	90	5	60	60	0	0	39	0.97
1201541--1201584	21	2.0	23	86	13	65	56	0	2	40	1.11
1201545--1201578	13	2.6	13	80	0	50	64	0	0	35	0.94
1203450--1203526	26	3.0	26	68	25	65	48	2	1	48	1.23
1204441--1204475	18	1.9	18	88	0	52	68	14	2	14	1.32
1206006--1206053	17	2.8	17	87	9	71	33	0	0	66	0.92
1206681--1206715	18	1.9	18	88	0	52	57	0	0	42	0.99
1207349--1207390	19	2.2	20	95	4	77	52	0	0	47	1.00
1207555--1207594	17	2.4	17	78	0	53	50	0	0	50	1.00
1207870--1207913	13	3.4	13	81	9	54	56	2	6	34	1.38
1210690--1210729	1	40.0	1	89	0	62	95	5	0	0	0.29
1212250--1212301	24	2.2	24	89	0	77	48	5	3	42	1.45
1212258--1212307	24	2.1	24	96	0	91	48	4	4	44	1.40
1215216--1215250	12	3.0	12	87	4	54	91	8	0	0	0.42
1216769--1216822	24	2.2	26	83	6	67	46	7	3	42	1.49
1220267--1220311	23	1.9	23	82	13	56	75	2	2	20	1.01
1221022--1221068	18	2.5	19	82	6	51	80	4	2	12	0.94
1221033--1221092	18	3.2	18	80	4	66	76	1	3	18	1.00
1221340--1221486	41	3.6	39	78	9	134	41	15	16	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1221723--1221859	43	3.1	43	72	15	145	32	16	13	37	1.88
1222216--1222269	21	2.6	21	100	0	108	35	18	9	37	1.83
1222311--1222378	21	3.2	21	72	6	66	39	14	4	41	1.66
1223272--1223325	14	3.9	14	87	0	72	5	18	0	75	0.98
1223283--1223348	8	7.8	8	73	17	53	6	12	0	81	0.85
1223271--1223348	14	5.4	14	74	15	61	5	14	0	80	0.87
1234427--1234494	18	3.8	18	67	9	50	73	10	0	16	1.09
1235213--1235301	7	12.6	7	70	19	51	76	5	3	14	1.10
1235215--1235301	34	2.6	34	80	14	108	75	5	3	14	1.12
1238036--1238067	16	1.9	17	93	6	57	0	34	0	65	0.93
1240934--1240966	12	2.8	12	95	0	57	27	0	3	69	1.03
1241381--1241436	26	2.1	28	86	6	80	28	0	3	67	1.07
1240976--1241417	231	1.9	228	82	7	558	35	12	7	43	1.71
1242474--1242551	29	2.7	29	80	9	79	15	12	47	24	1.80
1242525--1242576	21	2.5	21	93	0	95	11	9	50	28	1.70
1242884--1243469	48	12.0	48	85	4	762	34	25	12	27	1.92
1242884--1243469	97	6.0	98	89	2	837	34	25	12	27	1.92
1249116--1250292	144	8.2	144	93	0	1958	33	16	23	25	1.96
1249116--1250292	432	2.7	432	96	0	2183	33	16	23	25	1.96
1251980--1252034	16	3.7	14	76	19	58	47	1	1	49	1.23
1252015--1252066	20	2.4	23	84	12	74	40	0	0	59	0.97
1252309--1252401	39	2.5	37	78	3	96	49	7	5	37	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1253490--1253581	40	2.2	40	90	3	139	25	20	7	46	1.77
1261116--1261163	25	1.9	25	83	8	62	50	2	0	47	1.12
1262922--1263216	150	2.0	146	86	2	410	52	5	3	38	1.40
1263150--1263184	18	1.9	18	88	0	52	57	0	0	42	0.99
1263527--1263570	21	2.1	21	83	8	54	47	0	11	40	1.39
1263787--1263830	20	2.1	21	84	12	56	43	2	2	52	1.26
1264590--1264645	25	2.3	25	81	12	71	46	1	0	51	1.11
1265818--1265857	12	3.4	12	82	3	55	82	15	0	2	0.77
1266503--1266555	21	2.4	23	75	6	56	28	1	1	67	1.11
1266606--1266635	7	4.3	7	91	0	51	70	0	0	30	0.88
1266887--1266934	19	2.6	17	87	6	60	62	2	2	33	1.18
1278970--1279481	47	10.7	49	83	4	561	27	11	22	37	1.89
1278970--1279481	96	5.4	98	81	8	572	27	11	22	37	1.89
1279745--1279788	19	2.2	21	88	8	65	63	0	0	36	0.95
1279759--1279814	19	3.1	19	82	14	57	71	3	0	25	1.02
1280827--1280873	21	2.1	23	84	7	62	29	2	0	68	1.02
1280924--1280953	7	4.3	7	91	0	51	70	0	0	30	0.88
1281202--1281249	19	2.6	17	78	12	51	60	4	2	33	1.27
1281426--1281465	21	1.9	21	89	0	62	70	5	2	22	1.19
1281426--1281476	21	2.3	21	80	6	57	70	3	5	19	1.24
1285593--1285635	19	2.2	20	83	4	52	53	2	0	44	1.13
1285790--1285834	17	2.6	18	79	10	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1286694--1286985	60	4.8	58	85	11	356	32	12	8	45	1.72
1286904--1286943	21	1.9	21	84	0	53	25	2	10	62	1.39
1287831--1287930	31	3.4	30	77	10	98	65	3	8	24	1.34
1287922--1287978	23	2.5	23	78	16	64	75	3	0	21	0.95
1287923--1287982	12	4.9	12	76	15	52	75	3	0	21	0.95
1287951--1287979	15	1.9	15	100	0	58	79	0	0	20	0.74
1287908--1288002	37	2.5	38	74	16	90	68	3	1	27	1.11
1287968--1288015	15	3.2	16	83	16	52	62	4	0	33	1.14
1288083--1288117	16	2.2	16	95	5	63	88	0	11	0	0.51
1290753--1290793	19	2.1	20	90	4	66	56	4	0	39	1.21
1290740--1290792	27	2.0	27	85	7	72	56	3	0	39	1.17
1290952--1290988	15	2.4	16	82	13	51	54	0	0	45	1.00
1291097--1291136	14	2.9	13	88	7	53	32	0	2	65	1.06
1292670--1292746	38	1.9	38	87	7	109	49	0	2	48	1.15
1292730--1292765	15	2.4	16	86	13	58	58	0	0	41	0.98
1293315--1293363	15	3.1	15	72	11	53	48	4	0	46	1.20
1294782--1294873	40	2.2	40	88	3	130	27	20	6	45	1.75
1297055--1297081	9	3.0	9	100	0	54	55	33	0	11	1.35
1303730--1303767	15	2.6	15	87	4	51	0	2	10	86	0.66
1303732--1303778	22	2.1	22	88	0	67	0	2	14	82	0.75
1303728--1303774	25	1.9	24	86	4	67	0	2	14	82	0.75
1303732--1303778	10	4.3	11	82	15	53	0	2	14	82	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1311744--1311840	51	1.9	50	89	2	149	41	20	8	29	1.81
1316342--1316389	21	2.2	21	78	10	53	47	2	0	50	1.12
1317943--1317985	6	7.2	6	89	0	59	51	13	0	34	1.42
1318660--1318712	25	2.1	25	100	0	106	32	18	3	45	1.68
1318668--1318721	25	2.2	25	86	0	72	35	16	5	42	1.72
1323092--1323695	144	4.2	144	90	1	908	34	17	23	24	1.96
1323199--1323422	72	3.1	71	61	16	163	32	15	25	26	1.96
1325435--1325484	16	3.2	16	82	2	57	52	0	2	46	1.12
1327033--1327098	31	2.1	31	83	5	80	59	1	3	36	1.22
1327033--1327096	32	2.0	31	82	8	76	57	1	3	37	1.24
1329128--1329185	20	2.7	21	86	13	82	39	0	0	60	0.97
1329165--1329203	20	2.1	18	85	9	51	28	2	0	69	1.02
1329308--1329385	39	2.0	39	84	2	102	50	7	7	34	1.60
1331717--1331767	21	2.4	22	77	9	61	41	1	1	54	1.22
1331868--1331904	19	1.9	19	88	0	56	51	0	10	37	1.37
1339652--1339682	3	10.3	3	100	0	62	67	0	0	32	0.91
1342933--1342984	16	3.2	16	73	10	52	42	7	9	40	1.66
1344598--1344652	28	2.0	28	92	0	92	34	23	10	30	1.89
1345394--1345575	89	2.0	89	94	2	321	40	8	11	39	1.73
1347456--1347767	144	2.2	144	89	1	473	35	16	22	25	1.95
1350192--1350256	16	4.0	16	76	6	60	50	0	0	49	1.00
1352149--1352181	17	2.0	16	94	5	57	72	0	9	18	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1353020--1353073	17	3.1	18	76	12	67	31	0	0	68	0.90
1354395--1354438	20	2.2	21	88	8	65	59	2	0	38	1.10
1354408--1354511	53	2.0	52	81	9	122	52	5	1	39	1.36
1354678--1354725	25	1.9	25	83	8	62	45	4	0	50	1.21
1355064--1355098	18	1.9	18	88	0	52	57	0	0	42	0.99
1355748--1355791	20	2.2	21	84	8	56	54	2	2	40	1.25
1355786--1355822	18	2.1	18	90	10	58	40	2	5	51	1.39
1355952--1355994	17	2.5	17	80	0	59	51	0	0	48	1.00
1356031--1356100	27	2.7	25	78	22	65	48	2	1	47	1.25
1357687--1357731	22	2.0	22	83	8	56	51	0	6	42	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117