genome.fa.s101.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  57  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10635423--10635587	5	32.2	5	77	10	122	38	6	1	53	1.35
10638466--10638517	20	2.6	20	96	0	95	17	15	15	51	1.76
10640324--10640365	16	2.5	17	88	7	68	28	7	21	42	1.79
10642045--10642199	66	2.4	66	83	1	204	16	21	15	46	1.84
10642045--10642296	66	3.8	65	80	3	202	16	22	15	45	1.85
10642147--10642314	66	2.5	66	82	1	176	17	22	14	45	1.84
10642802--10643032	3	85.0	3	67	20	80	34	5	3	56	1.40
10642859--10643039	5	35.2	5	75	12	120	35	4	3	56	1.35
10642823--10643035	18	12.8	17	70	20	105	35	5	3	55	1.40
10642892--10643035	64	2.3	62	82	7	173	36	4	2	56	1.35
10643875--10643930	19	3.0	19	75	19	55	19	1	7	71	1.18
10644012--10644075	24	2.4	27	85	12	80	76	6	3	14	1.10
10649182--10649230	21	2.4	19	80	12	53	36	0	2	61	1.08
10649657--10649689	6	5.7	6	85	7	50	30	0	3	66	1.06
10652515--10652555	18	2.2	20	86	8	59	60	4	7	26	1.43
10653007--10653048	21	2.0	21	86	9	59	47	0	0	52	1.00
10653556--10653827	10	27.9	10	64	15	61	50	6	0	42	1.32
10653561--10653664	11	10.2	10	79	12	88	56	8	0	34	1.30
10653556--10653784	19	11.3	19	69	18	72	51	6	0	41	1.31
10653625--10653731	55	1.9	57	81	7	130	57	6	0	36	1.25
10653736--10653785	19	2.6	19	93	3	82	40	4	2	54	1.31
10653792--10653827	9	4.0	9	85	0	54	47	2	0	50	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10653556--10653827	19	13.9	19	70	11	70	50	6	0	42	1.32
10653743--10653820	18	4.6	18	66	19	60	39	5	2	52	1.37
10653976--10654107	20	6.7	19	72	14	72	36	3	5	55	1.38
10653976--10654100	19	6.4	19	73	10	65	36	3	5	55	1.40
10654037--10654109	19	3.7	19	78	14	78	28	4	4	63	1.32
10654412--10654437	3	8.7	3	100	0	52	65	0	0	34	0.93
10654979--10655050	22	3.0	25	76	15	64	63	1	0	34	1.03
10655067--10655093	11	2.5	11	100	0	54	48	14	0	37	1.45
10682020--10682054	13	2.7	13	100	0	70	22	22	14	40	1.90
10686115--10686155	18	2.3	18	100	0	82	19	24	12	43	1.85
10690403--10690443	20	2.0	20	90	0	64	31	24	14	29	1.95
10692359--10692390	16	2.0	16	93	0	55	53	6	3	37	1.42
10694684--10694810	7	19.4	7	68	16	58	18	0	33	47	1.54
10694690--10694762	19	3.8	18	78	10	65	16	1	35	46	1.56
10696193--10696252	20	3.0	20	80	2	68	50	30	0	20	1.49
10699260--10699284	13	1.9	13	100	0	50	80	0	0	20	0.72
10700436--10700482	18	2.6	18	86	6	60	46	0	2	51	1.13
10700437--10700483	23	2.0	23	83	0	58	46	0	2	51	1.13
10700625--10700663	20	2.0	20	85	10	53	33	7	7	51	1.59
10701283--10701355	25	2.8	25	81	6	83	16	0	21	61	1.34
10701638--10701750	37	3.4	37	72	25	140	36	7	7	48	1.60
10701639--10701782	63	2.3	63	100	0	288	37	6	8	47	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10703573--10703611	8	4.9	8	83	0	51	66	0	0	33	0.92
10703639--10703691	26	2.0	26	85	0	70	37	13	18	30	1.89
10708408--10708458	22	2.3	22	93	0	84	47	3	3	45	1.40
10710042--10710116	38	1.9	39	86	2	107	45	16	5	33	1.69
10710306--10710425	32	3.9	32	72	19	103	53	10	5	30	1.58
10710341--10710447	20	5.4	20	68	13	69	53	11	5	29	1.59
10710351--10710446	24	3.8	23	70	25	68	55	10	5	29	1.55
10710305--10710446	56	2.6	55	94	2	248	53	10	5	30	1.58
10710414--10710477	31	2.1	31	90	0	101	53	14	6	26	1.64
10710482--10710522	22	1.9	21	90	5	64	48	4	7	39	1.52
10710481--10710657	24	7.8	24	69	20	71	53	8	3	34	1.48
10710534--10710638	47	2.3	45	85	6	131	57	7	0	34	1.34
10710535--10710657	21	5.5	21	72	15	86	56	8	1	32	1.40
10711313--10711347	12	2.8	12	91	4	52	68	8	0	22	1.16
10711627--10711831	42	4.8	43	83	5	238	39	19	12	28	1.88
10711847--10711955	42	2.6	43	81	10	118	42	14	10	33	1.79
10711735--10711943	111	1.9	111	83	5	271	36	18	12	32	1.89
10713361--10713405	20	2.2	20	92	0	72	6	2	6	84	0.85
10719198--10719281	38	2.2	39	89	2	134	46	14	5	33	1.69
10719315--10719425	18	5.9	18	71	19	59	50	9	6	33	1.61
10719360--10719400	16	2.6	15	84	7	55	46	9	7	36	1.65
10719375--10719465	23	4.0	23	71	23	75	51	13	5	29	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10719444--10719530	32	2.7	33	83	13	94	55	10	4	29	1.54
10719484--10719549	31	2.1	31	82	5	78	53	12	6	28	1.62
10719438--10719605	85	1.9	87	83	11	220	55	8	4	30	1.52
10719598--10719714	24	5.0	24	72	18	104	55	9	3	31	1.48
10719589--10719714	47	2.7	47	89	6	177	55	8	3	32	1.46
10719738--10719778	18	2.3	19	87	8	59	58	12	4	24	1.53
10720351--10720386	12	2.9	12	91	4	54	66	11	0	22	1.22
10722032--10722065	15	2.3	15	94	0	59	14	14	5	64	1.46
10731684--10731728	22	2.0	22	83	8	56	64	20	2	13	1.38
10736364--10736395	10	3.2	10	100	0	64	21	31	18	28	1.97
10737757--10738264	144	3.5	139	70	14	345	33	14	11	41	1.81
10739358--10739641	151	1.9	151	90	0	460	29	16	19	34	1.93
10741257--10741308	27	1.9	27	92	0	86	30	17	19	32	1.95
10741402--10741440	18	2.2	18	85	0	51	28	20	12	38	1.89
10741768--10741819	22	2.4	22	83	6	70	34	23	9	32	1.87
10741678--10742428	126	6.0	126	83	4	854	32	15	15	36	1.90
10742033--10742077	22	2.0	22	82	0	54	31	22	13	33	1.92
10742266--10742323	22	2.6	22	83	0	71	27	22	15	34	1.94
10742391--10742459	22	3.1	22	76	15	70	31	23	15	28	1.95
10742871--10743423	145	3.9	142	74	8	503	34	14	11	39	1.81
10744542--10744876	149	2.2	151	86	4	462	27	17	18	37	1.93
10751107--10751131	1	25.0	1	100	0	50	0	0	0	100	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10751319--10751369	19	2.8	17	75	24	50	52	0	3	43	1.19
10751337--10751415	29	2.7	30	86	7	83	51	0	2	45	1.14
10751356--10751415	29	2.1	29	93	0	102	53	0	1	45	1.10
10751356--10751430	29	2.6	28	85	8	98	50	0	1	48	1.09
10751513--10751572	29	2.0	30	83	3	77	46	3	0	50	1.18
10760247--10760277	2	15.5	2	100	0	62	48	0	0	51	1.00
10761860--10761904	22	2.0	22	95	0	81	48	22	15	13	1.79
10764459--10764486	14	2.0	14	100	0	56	21	0	0	78	0.75
10765211--10765262	4	13.0	4	91	0	86	50	21	0	28	1.49
10773140--10773181	17	2.5	17	74	14	50	16	9	0	73	1.08
10773173--10773438	129	2.1	129	83	8	337	37	7	6	49	1.56
10773882--10773928	6	7.8	6	82	17	53	85	4	2	8	0.81
10773882--10773928	19	2.6	17	90	6	67	85	4	2	8	0.81
10773873--10773928	25	2.2	26	80	3	69	83	5	1	8	0.85
10775439--10775483	16	2.9	16	77	9	58	46	8	2	42	1.47
10776458--10776598	72	2.0	72	81	2	167	48	9	12	29	1.74
10780592--10780630	16	2.4	16	86	0	51	61	0	0	38	0.96
10782165--10782201	9	3.8	10	86	13	51	56	0	0	43	0.99
10782592--10782616	12	2.1	12	100	0	50	60	0	0	40	0.97
10796029--10796087	30	2.0	30	90	6	93	32	3	10	54	1.51
10803459--10803488	15	1.9	16	93	6	53	50	26	0	23	1.50
10804795--10804904	56	1.9	57	90	1	177	22	13	7	56	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10804965--10805190	111	2.0	111	94	1	400	37	14	9	38	1.79
10805426--10805474	12	4.0	12	77	15	55	77	8	0	14	0.98
10806352--10806407	15	4.0	15	71	23	59	76	10	0	12	1.01
10806353--10806409	25	2.3	25	96	0	105	78	10	0	10	0.95
10806369--10806418	9	5.8	9	76	9	50	82	8	0	10	0.86
10806378--10806408	16	1.9	16	93	0	53	80	9	0	9	0.90
10806630--10806858	41	5.2	41	78	15	174	44	19	10	24	1.83
10806705--10806858	41	3.7	41	87	5	193	45	18	11	25	1.82
10806705--10806858	83	1.8	84	84	4	213	45	18	11	25	1.82
10807197--10807245	19	2.5	20	86	6	64	38	16	6	38	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117