genome.fa.s101.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  85  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15376509--15376588	36	2.3	35	80	6	90	35	22	7	35	1.82
15377264--15377293	12	2.6	11	90	10	51	90	10	0	0	0.47
15377440--15377481	20	2.0	20	90	4	66	61	9	9	19	1.53
15377657--15377785	49	2.6	49	77	2	143	32	16	11	39	1.84
15377978--15378097	50	2.4	49	81	6	127	43	11	9	35	1.73
15377945--15378134	48	3.9	48	76	11	183	41	12	10	36	1.76
15381049--15381087	2	19.5	2	100	0	78	51	0	0	48	1.00
15381511--15381595	42	2.0	42	82	8	102	35	14	4	45	1.65
15387682--15387717	11	3.4	11	88	3	56	11	11	0	77	0.99
15393074--15393127	17	3.2	17	86	0	81	42	27	7	22	1.80
15394071--15394145	5	15.4	5	74	18	61	24	0	4	72	1.02
15394820--15394867	25	1.9	25	82	0	60	58	2	27	12	1.46
15394996--15395046	8	6.2	8	84	13	68	11	1	1	84	0.79
15394988--15395045	25	2.3	25	82	5	73	13	3	1	81	0.91
15395024--15395067	16	2.8	15	86	10	61	9	2	9	79	1.02
15395460--15395506	24	2.0	25	87	8	71	36	4	8	51	1.52
15397016--15397055	20	2.1	19	86	13	55	15	0	7	77	0.98
15397011--15397070	26	2.3	26	85	5	77	16	0	8	75	1.04
15398145--15398178	15	2.3	15	89	0	50	32	0	0	67	0.91
15402727--15402751	2	12.5	2	100	0	50	48	0	52	0	1.00
15404417--15404460	18	2.4	18	85	11	54	0	31	4	63	1.14
15406750--15406774	13	1.9	13	100	0	50	72	8	0	20	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15407425--15407481	23	2.4	25	79	8	73	43	3	1	50	1.29
15409210--15409247	17	2.1	19	90	9	62	42	5	10	42	1.62
15411905--15411949	4	11.2	4	85	0	63	48	0	24	26	1.51
15413218--15413242	2	12.5	2	100	0	50	52	0	0	48	1.00
15415244--15415287	13	3.4	13	93	0	70	18	2	20	59	1.49
15415408--15415453	21	2.3	19	85	7	56	30	4	0	65	1.12
15420152--15420661	146	3.5	145	78	8	471	32	13	12	42	1.81
15420205--15420661	146	3.1	144	79	7	492	32	12	12	42	1.80
15427033--15427059	2	13.5	2	100	0	54	48	0	0	51	1.00
15427124--15427157	2	17.5	2	93	6	61	50	0	0	50	1.00
15427044--15427293	136	1.8	136	100	0	500	44	10	10	35	1.73
15427260--15427293	2	17.5	2	93	6	61	50	0	0	50	1.00
15435380--15435405	12	2.2	12	100	0	52	46	46	0	7	1.31
15435382--15435507	7	19.3	7	68	19	76	44	34	3	17	1.65
15435363--15435507	38	3.7	39	74	15	122	44	35	2	17	1.63
15435324--15435429	19	5.6	19	77	11	94	45	35	0	17	1.56
15435382--15435507	19	6.5	19	72	18	98	44	34	3	17	1.65
15445333--15445371	21	1.9	20	84	5	51	69	0	15	15	1.20
15446173--15446224	27	1.9	27	100	0	104	32	15	15	36	1.89
15452065--15452369	33	9.5	33	78	13	257	27	13	21	37	1.91
15452082--15452320	65	3.6	66	82	12	244	24	12	23	39	1.90
15452313--15452375	29	2.1	30	91	8	103	26	15	25	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15452321--15452398	29	2.7	29	82	7	79	32	14	21	32	1.93
15452406--15452479	32	2.4	29	76	14	78	28	18	22	29	1.98
15452393--15452581	96	2.0	95	79	7	206	31	15	17	34	1.92
15452777--15452857	22	3.7	22	76	0	81	32	20	17	29	1.96
15453832--15453882	26	2.0	26	88	0	75	1	17	1	78	0.94
15456850--15456894	4	11.2	4	85	0	63	48	2	24	24	1.62
15460187--15460230	13	3.4	12	82	14	52	18	4	18	59	1.55
15460495--15460578	9	9.2	9	76	2	51	26	2	4	66	1.23
15460538--15460579	3	14.0	3	94	0	75	30	0	2	66	1.04
15465517--15465973	146	3.1	143	81	6	526	31	12	13	42	1.81
15467064--15467127	23	2.9	22	88	4	58	18	10	14	56	1.67
15467073--15467127	23	2.4	23	96	0	101	16	12	12	58	1.64
15474274--15474316	13	3.2	13	90	3	68	83	0	13	2	0.74
15474272--15474336	17	3.8	17	80	13	71	83	0	13	3	0.77
15474273--15474336	27	2.4	26	85	14	87	82	0	14	3	0.78
15474274--15474336	9	7.1	9	71	10	58	82	0	14	3	0.79
15475263--15475331	36	1.9	35	82	2	84	21	18	10	49	1.77
15475564--15475819	142	1.8	142	81	5	320	20	17	12	49	1.79
15475578--15475800	70	3.2	69	73	9	164	20	17	11	50	1.77
15475859--15475931	35	2.1	35	84	2	92	21	15	8	54	1.66
15482608--15482638	2	15.5	2	100	0	62	48	0	0	51	1.00
15482696--15482735	2	20.5	2	89	5	64	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15492531--15492562	2	16.5	2	93	6	57	50	0	0	50	1.00
15493077--15493130	28	1.9	28	85	7	74	79	3	7	9	1.03
15493325--15493366	21	2.0	21	81	4	59	66	4	4	23	1.30
15494496--15494564	12	5.8	12	80	0	75	43	2	26	27	1.69
15494474--15494564	24	3.8	24	82	0	92	47	2	24	26	1.63
15494499--15494572	24	3.1	24	82	0	67	43	4	25	27	1.72
15495873--15495951	24	3.3	24	78	16	92	59	5	3	31	1.37
15495850--15495951	47	2.1	48	87	5	145	62	3	3	29	1.31
15497689--15497747	25	2.4	25	100	0	118	16	22	25	35	1.95
15498044--15498112	25	2.8	25	86	0	93	46	31	1	20	1.60
15498219--15498308	18	4.7	18	75	14	65	41	35	4	18	1.71
15498218--15498317	38	2.6	39	79	6	96	43	35	4	18	1.68
15498257--15498345	39	2.4	36	82	16	101	43	37	3	15	1.64
15498295--15498352	13	4.5	13	69	18	50	43	41	0	15	1.47
15505631--15505655	10	2.5	10	100	0	50	76	0	0	24	0.80
15505703--15505751	6	7.8	6	82	17	64	79	4	14	2	0.97
15506145--15506178	10	3.4	10	87	0	50	82	0	2	14	0.79
15506213--15506241	6	4.8	6	100	0	58	82	0	17	0	0.66
15514149--15514226	37	2.1	37	82	0	93	34	12	8	43	1.74
15517690--15517748	27	2.1	29	81	6	68	35	3	3	57	1.32
15518238--15518551	13	24.2	13	67	12	135	20	1	32	45	1.59
15518212--15518486	20	14.4	20	67	19	78	19	1	34	44	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15518238--15518551	7	48.3	6	66	16	103	20	1	32	45	1.59
15518340--15518574	33	7.2	33	71	11	126	20	1	30	47	1.60
15518573--15518628	26	2.2	26	86	0	76	14	7	35	42	1.73
15519607--15519632	13	2.0	13	100	0	52	0	7	0	92	0.39
15520067--15520340	129	2.2	123	83	6	336	37	12	16	33	1.87
15520067--15520341	130	2.2	124	82	8	342	37	12	16	33	1.87
15520115--15520384	129	2.1	130	83	3	330	41	11	15	31	1.83
15521197--15521403	50	4.1	49	71	11	152	40	15	8	34	1.79
15521142--15521403	100	2.6	100	80	4	287	40	15	9	35	1.79
15521109--15521431	150	2.1	151	81	7	372	40	14	9	34	1.80
15521366--15521552	50	3.8	48	75	8	151	38	13	11	35	1.82
15534846--15535172	113	2.9	113	91	0	503	35	22	8	32	1.85
15539759--15539817	14	4.4	14	72	23	54	27	6	15	50	1.68
15540575--15540686	55	2.0	55	87	3	163	5	29	12	52	1.61
15540705--15540757	19	2.8	19	80	11	56	0	11	13	75	1.05
15541545--15541584	12	3.2	12	79	6	53	27	0	2	70	1.01
15541572--15541617	20	2.2	21	84	3	58	28	4	2	65	1.23
15541780--15541819	14	3.1	14	75	20	50	27	7	27	37	1.84
15543016--15543063	25	1.9	25	100	0	96	43	20	10	25	1.83
15546472--15546502	15	2.1	15	100	0	62	12	12	12	61	1.58
15555342--15555656	154	2.0	155	82	1	391	31	17	14	36	1.90
15561565--15561599	17	2.1	17	89	5	54	14	14	0	71	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15562625--15562666	14	3.1	14	79	6	50	19	2	30	47	1.62
15562671--15562750	25	3.2	24	72	10	70	23	2	26	47	1.64
15562693--15563036	13	26.4	13	67	16	117	21	1	30	46	1.61
15562744--15562834	7	13.6	7	73	11	66	19	0	30	49	1.49
15562769--15562834	27	2.4	27	82	9	73	21	0	33	45	1.52
15562610--15562867	26	9.9	26	66	14	88	19	1	31	46	1.61
15562968--15563036	7	10.4	7	71	12	56	28	0	24	46	1.53
15562972--15563050	32	2.4	32	85	4	104	26	0	27	45	1.54
15566550--15566618	6	11.0	6	71	20	52	75	1	20	2	1.01
15567578--15567661	33	2.5	33	86	0	114	38	0	13	48	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117