genome.fa.s101.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  32  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4839864--4840179	60	5.3	59	81	8	304	36	7	4	50	1.53
4839880--4840147	121	2.3	120	84	7	334	37	8	4	50	1.51
4840889--4840932	19	2.4	19	84	3	54	6	11	11	70	1.33
4841758--4841790	4	8.2	4	100	0	66	0	24	0	75	0.80
4842172--4842231	30	2.0	30	90	0	93	41	1	20	36	1.62
4851544--4851574	2	15.5	2	100	0	62	48	0	0	51	1.00
4852530--4852678	52	2.9	50	74	20	137	45	8	16	29	1.76
4858773--4858812	3	13.3	3	100	0	80	65	0	0	35	0.93
4860926--4861073	73	2.0	74	97	1	280	33	23	14	29	1.94
4875602--4875649	25	1.9	25	95	0	87	20	8	31	39	1.82
4886011--4886164	49	3.1	50	82	9	208	35	8	2	53	1.45
4886011--4886164	48	3.1	50	84	7	208	35	8	2	53	1.45
4886368--4886656	63	4.7	60	80	8	260	38	7	3	49	1.50
4888159--4888555	86	4.7	85	79	5	338	48	12	14	24	1.78
4888284--4888539	82	3.1	81	78	9	248	51	13	12	22	1.74
4888187--4888614	86	5.0	84	76	11	250	49	12	14	23	1.76
4900210--4900344	48	2.8	48	82	1	171	38	11	2	47	1.53
4900453--4900495	16	2.9	15	80	10	52	34	6	2	55	1.39
4900485--4900881	60	6.7	59	73	13	271	35	7	5	51	1.54
4900578--4900798	118	1.9	117	81	8	270	37	8	4	49	1.54
4900723--4900916	59	3.3	58	78	13	130	34	8	5	51	1.57
4903815--4903839	6	4.2	6	100	0	50	0	52	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4905932--4905969	16	2.4	16	100	0	76	21	13	18	47	1.82
4910433--4910469	13	3.0	13	84	11	51	29	0	5	64	1.15
4914536--4914570	2	17.5	2	93	0	61	45	0	0	54	0.99
4916980--4917024	23	1.9	24	86	4	65	42	0	8	48	1.34
4918156--4918198	19	2.2	20	91	4	70	53	6	0	39	1.28
4926925--4926964	9	4.4	9	87	0	53	30	5	37	27	1.78
4926925--4926955	3	10.3	3	92	0	53	32	3	35	29	1.73
4931874--4931913	13	3.1	13	81	0	53	57	0	0	42	0.98
4939532--4939736	102	2.0	102	95	0	365	27	16	15	40	1.88
4949195--4949227	16	2.1	16	100	0	66	39	0	18	42	1.50
4971909--4971943	3	11.7	3	88	11	54	0	34	0	65	0.93
4976049--4976084	3	12.0	3	100	0	72	66	0	0	33	0.92
4976261--4976337	28	2.8	28	92	4	120	45	32	0	22	1.53
4977064--4977103	21	1.9	21	85	10	55	20	20	10	50	1.76
4980600--4980676	28	2.8	28	100	0	154	45	37	0	16	1.48
4990528--4990563	15	2.4	15	90	0	54	50	22	0	27	1.50
5014868--5014904	19	1.9	19	88	0	56	45	0	24	29	1.53
5015500--5015556	27	2.1	27	96	0	105	35	8	19	36	1.83
5031895--5031934	2	20.0	2	85	10	55	45	2	0	52	1.14
5046878--5046930	16	3.3	16	91	0	88	43	0	13	43	1.43
5046903--5046953	23	2.1	26	85	10	72	43	1	11	43	1.52
5047620--5047652	16	2.1	16	100	0	66	30	33	12	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5052126--5052151	3	8.7	3	100	0	52	30	0	0	69	0.89
5052480--5052518	15	2.6	15	91	0	60	30	15	2	51	1.57
5053017--5053041	2	12.5	2	100	0	50	52	0	0	48	1.00
5053730--5053814	33	2.5	33	83	9	102	40	8	4	47	1.54
5053730--5053828	34	2.9	34	79	10	105	40	8	5	46	1.55
5055979--5056015	17	2.2	17	90	9	58	54	5	0	40	1.24
5057322--5057380	27	2.1	29	84	12	79	47	5	1	45	1.34
5057413--5057593	89	2.0	89	98	0	353	32	14	13	39	1.85
5060768--5060806	9	4.4	9	90	3	62	53	2	0	43	1.14
5061005--5061031	2	13.5	2	100	0	54	51	0	0	48	1.00
5075837--5076108	136	2.0	136	97	0	517	29	8	12	50	1.68
5084779--5084812	2	17.0	2	93	0	59	50	2	0	47	1.16
5090154--5090179	13	2.0	13	100	0	52	38	23	0	38	1.55
5090432--5090464	16	2.1	16	100	0	66	42	18	0	39	1.50
5092362--5092389	2	14.0	2	100	0	56	50	0	0	50	1.00
5100465--5100513	18	2.7	18	84	15	73	51	0	0	48	1.00
5101577--5101622	23	2.0	23	91	4	76	52	4	0	43	1.21
5114788--5114815	2	14.0	2	100	0	56	50	0	0	50	1.00
5120211--5120235	7	3.6	7	100	0	50	88	0	0	12	0.53
5119965--5120341	192	2.0	187	96	2	700	52	22	9	16	1.72
5120857--5120911	21	2.5	22	85	2	67	30	0	0	69	0.89
5124804--5124902	52	1.9	52	87	4	146	31	19	4	45	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5126897--5127013	53	2.2	53	82	8	132	29	29	9	30	1.89
5128220--5128396	88	2.0	88	100	0	354	46	12	7	33	1.71
5133765--5133816	24	2.2	23	80	10	59	53	0	0	46	1.00
5147855--5147883	3	9.7	3	100	0	58	65	0	0	34	0.93
5148131--5148156	2	13.0	2	100	0	52	0	50	0	50	1.00
5154577--5154625	25	2.0	25	84	7	66	42	2	0	55	1.11
5154647--5154693	21	2.2	21	78	10	60	42	0	0	57	0.98
5177522--5177590	33	2.1	32	89	2	102	49	13	2	34	1.56
5178384--5178412	12	2.3	13	94	5	51	17	3	0	79	0.87
5178387--5178515	48	2.4	54	74	18	135	22	7	4	65	1.38
5178393--5178507	48	2.4	47	84	7	149	23	8	5	62	1.44
5178596--5178658	27	2.3	27	97	0	117	33	14	12	39	1.84
5178798--5178857	24	2.5	23	75	17	68	45	11	1	41	1.50
5178970--5179011	4	10.2	4	80	14	50	78	2	0	19	0.86
5178968--5179009	13	3.3	12	83	9	57	80	2	0	16	0.81
5178970--5179011	17	2.5	17	92	3	68	78	2	0	19	0.86
5179430--5179464	18	2.0	18	88	5	54	20	14	0	65	1.26
5179521--5179583	31	2.1	30	82	8	74	73	3	4	19	1.15
5179522--5179601	23	3.5	22	81	11	74	71	2	6	20	1.20
5180031--5180055	13	1.9	13	100	0	50	48	0	28	24	1.52
5185520--5185579	5	13.0	5	89	7	76	76	1	0	21	0.87
5185520--5185578	22	2.6	23	86	8	93	76	1	0	22	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5185526--5185583	27	2.2	27	87	9	84	77	1	0	20	0.86
5200391--5200425	3	11.7	3	87	0	52	2	65	2	28	1.21
5210259--5210283	12	2.1	12	100	0	50	24	16	16	44	1.86
5214103--5214148	16	3.1	16	75	18	53	67	0	0	32	0.91
5221534--5221591	27	2.1	28	96	3	109	25	8	3	62	1.40
5223931--5223989	17	3.4	17	72	21	50	45	0	0	54	0.99
5223948--5224006	25	2.2	29	82	11	72	42	1	1	54	1.20
5224113--5224150	15	2.6	15	87	4	51	15	5	0	78	0.91
5239645--5239680	8	4.3	9	83	16	51	41	0	0	58	0.98
5240051--5240085	2	17.5	2	93	0	61	51	0	0	48	1.00
5253750--5253798	2	24.5	2	100	0	98	0	51	0	48	1.00
5258400--5258424	1	25.0	1	100	0	50	100	0	0	0	0.00
5263172--5263339	79	2.1	78	84	3	221	30	15	23	30	1.95
5264526--5264590	20	3.2	19	72	10	58	52	0	1	46	1.10
5264517--5264559	12	3.5	12	78	6	50	53	0	0	46	1.00
5266418--5266449	15	2.1	15	94	0	55	40	0	0	59	0.97
5267468--5267508	14	2.9	14	82	10	57	58	0	0	41	0.98
5267468--5267506	15	2.7	14	88	4	51	58	0	0	41	0.98
5268116--5268161	2	23.0	2	100	0	92	50	0	50	0	1.00
5272717--5272772	27	2.1	27	83	6	69	41	5	3	50	1.43
5273979--5274017	19	2.0	20	85	5	53	35	25	2	35	1.70
5274288--5274525	44	5.5	41	75	12	165	42	18	14	24	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5274288--5274695	87	4.7	87	78	6	332	44	16	13	25	1.84
5274300--5274694	130	3.0	131	80	4	386	44	17	12	25	1.84
5274288--5274695	43	9.4	43	77	6	333	44	16	13	25	1.84
5277076--5277177	48	2.1	48	85	3	134	23	12	5	57	1.57
5279091--5279135	14	3.3	13	85	11	63	60	0	0	40	0.97
5281372--5281404	17	1.9	17	93	0	57	51	0	24	24	1.48
5281530--5281575	11	4.3	11	83	10	51	41	0	0	58	0.98
5281543--5281582	19	2.0	20	85	9	55	47	0	2	50	1.14
5282360--5282385	2	13.0	2	100	0	52	50	0	0	50	1.00
5283852--5283916	27	2.4	27	77	12	69	40	4	6	49	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117