genome.fa.s101.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  79  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14065258--14065515	140	1.8	142	84	5	353	32	13	13	40	1.84
14065959--14066005	20	2.3	20	81	0	58	74	4	17	4	1.14
14066785--14066821	18	2.0	20	89	10	60	35	16	2	45	1.61
14082001--14082042	16	2.4	18	80	11	52	69	9	9	11	1.38
14097725--14097771	24	1.9	25	86	4	69	51	6	2	40	1.39
14102207--14102293	34	2.5	35	77	11	88	50	17	18	13	1.78
14103883--14103925	24	1.9	22	86	13	61	37	18	20	23	1.94
14110685--14111097	145	2.8	145	84	6	482	30	16	13	39	1.87
14117948--14118157	66	3.2	66	77	13	216	38	7	8	45	1.63
14119279--14119425	52	2.8	52	81	6	163	26	26	6	40	1.81
14119460--14119490	11	2.8	11	90	0	53	51	32	0	16	1.44
14119731--14119803	25	2.9	25	79	4	67	23	32	6	36	1.81
14119800--14119881	31	2.6	31	90	0	119	25	23	20	30	1.99
14126022--14126110	46	1.9	46	93	0	151	25	8	15	49	1.74
14126552--14126638	36	2.4	35	81	7	93	34	4	11	49	1.60
14126888--14126977	35	2.7	33	87	5	128	28	10	8	52	1.65
14127450--14127574	23	5.5	23	70	15	80	36	6	25	31	1.81
14127886--14127956	21	3.2	22	68	6	63	49	11	12	26	1.74
14127919--14127991	21	3.4	21	69	12	58	36	6	20	35	1.80
14127791--14128045	87	2.9	87	80	3	253	43	9	16	30	1.80
14127888--14128055	43	3.9	43	81	6	178	41	8	16	33	1.79
14128466--14128490	11	2.3	11	100	0	50	32	32	0	36	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14131623--14131678	10	5.6	10	79	8	60	5	16	0	78	0.92
14145338--14145384	10	4.7	10	79	10	51	31	12	14	40	1.84
14145337--14145391	20	2.7	20	85	2	65	30	10	18	40	1.85
14146744--14146800	28	2.0	29	86	10	82	29	5	12	52	1.60
14155636--14155674	17	2.2	18	86	13	55	17	23	5	53	1.63
14157446--14157730	65	4.3	64	76	14	249	37	7	6	49	1.56
14157427--14157790	135	2.8	130	75	13	331	36	8	6	48	1.59
14159026--14159092	28	2.4	28	73	14	66	16	5	4	73	1.20
14167507--14167548	3	14.0	3	100	0	84	66	0	0	33	0.92
14169171--14169213	20	2.2	20	95	0	77	32	2	0	65	1.06
14171700--14171728	12	2.3	13	88	11	51	48	0	0	51	1.00
14171703--14171728	12	2.2	12	100	0	52	46	0	0	53	1.00
14172073--14172136	32	2.0	32	93	6	112	28	12	20	39	1.89
14176669--14176693	10	2.5	10	100	0	50	64	20	0	16	1.30
14188896--14188972	38	2.0	38	87	0	109	29	10	29	29	1.90
14195301--14195355	21	2.6	21	82	5	76	18	29	23	29	1.98
14200643--14200700	16	3.6	16	75	13	64	27	24	3	44	1.69
14200636--14200700	33	2.0	33	96	0	121	27	23	4	44	1.73
14200636--14200686	16	3.1	16	73	15	59	27	23	5	43	1.77
14209411--14209539	19	6.7	18	75	8	96	20	8	29	41	1.82
14209382--14209529	38	3.9	38	75	7	138	22	9	28	39	1.85
14209457--14209541	38	2.2	38	85	4	109	22	7	32	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14213523--14213557	16	2.2	16	89	0	52	42	8	14	34	1.76
14216448--14216506	31	1.9	31	82	0	73	18	10	25	45	1.81
14216583--14216628	18	2.6	18	82	0	65	21	13	26	39	1.90
14218125--14218186	24	2.7	23	85	9	81	9	12	11	66	1.46
14219050--14219164	33	3.5	33	84	4	133	33	17	14	34	1.90
14219254--14219426	66	2.6	65	78	9	174	30	15	19	35	1.93
14219204--14219360	32	4.8	30	69	20	95	33	15	16	35	1.90
14219411--14219653	131	1.8	132	85	4	348	28	14	18	38	1.90
14224732--14224816	39	2.1	41	82	8	104	34	12	29	23	1.92
14225200--14225234	3	11.7	3	87	0	52	37	2	0	60	1.12
14229025--14229059	18	1.9	18	94	0	61	28	0	0	71	0.86
14229356--14229435	13	6.3	13	75	4	56	15	5	22	57	1.57
14229388--14229447	25	2.4	25	100	0	120	15	3	25	56	1.54
14229405--14229448	12	3.6	12	75	6	52	15	4	25	54	1.60
14229356--14229435	38	2.1	38	83	4	99	15	5	22	57	1.57
14230314--14230507	90	2.1	90	93	5	329	4	22	15	57	1.55
14231040--14231106	9	7.2	9	78	9	64	28	0	1	70	0.96
14236026--14236192	85	2.0	85	86	0	235	36	15	16	31	1.90
14244736--14244763	10	2.8	10	100	0	56	21	7	32	39	1.80
14254944--14254974	13	2.3	14	94	5	55	58	0	0	41	0.98
14256833--14256878	17	2.7	17	83	16	60	13	8	8	69	1.36
14263148--14263195	24	2.0	24	91	0	78	37	4	22	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14266360--14266390	2	15.5	2	93	0	53	45	0	3	51	1.17
14267110--14267140	9	3.4	9	100	0	62	29	9	48	12	1.73
14271784--14271831	25	1.9	25	95	0	87	31	8	12	47	1.71
14272462--14272505	23	2.0	22	86	8	63	38	0	4	56	1.20
14273187--14273218	16	2.0	16	93	0	55	56	3	6	34	1.40
14273693--14273779	29	2.9	29	75	17	90	42	1	20	35	1.60
14278418--14278466	20	2.5	19	77	6	53	63	10	12	14	1.53
14278799--14278933	48	2.8	47	87	6	182	39	19	11	30	1.86
14281811--14281855	24	1.9	23	86	4	63	42	8	8	40	1.67
14281810--14281861	23	2.2	24	79	3	61	50	7	7	34	1.60
14287806--14287841	2	18.5	2	88	5	56	50	2	0	47	1.15
14293520--14293545	7	3.7	7	100	0	52	26	42	15	15	1.87
14301356--14301714	194	1.9	190	82	9	451	47	6	9	36	1.61
14305902--14305981	17	4.8	16	80	16	83	71	0	20	8	1.12
14305902--14305982	8	9.9	8	77	16	69	71	0	19	8	1.11
14307263--14307398	73	1.9	73	84	3	184	39	11	13	35	1.81
14307362--14307438	25	3.2	25	69	14	72	41	10	15	32	1.81
14307336--14307441	46	2.3	46	90	0	167	40	11	14	33	1.81
14307341--14307416	21	3.4	21	72	13	71	42	11	15	30	1.83
14307871--14308081	41	4.8	46	82	10	175	23	13	21	41	1.89
14307864--14308098	42	5.5	42	84	7	253	24	13	20	41	1.88
14307863--14308100	83	2.8	83	82	8	266	24	13	20	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14307916--14308142	42	5.3	44	83	7	136	24	12	18	44	1.84
14308265--14308306	22	1.9	22	90	0	66	33	11	9	45	1.73
14312164--14312205	21	2.0	21	85	0	57	35	11	4	47	1.61
14314546--14314598	17	3.1	16	74	12	52	22	5	0	71	1.06
14314814--14314911	26	3.6	25	77	15	81	21	8	19	51	1.73
14314832--14314874	13	3.3	13	75	12	52	18	6	18	55	1.64
14314885--14314911	12	2.2	12	100	0	54	14	7	22	55	1.64
14314977--14315220	132	1.8	132	95	0	443	30	13	3	52	1.57
14315582--14315656	38	2.0	38	94	0	132	49	13	12	25	1.76
14316674--14316715	9	4.7	9	85	8	59	9	30	0	59	1.29
14317435--14317465	15	2.1	15	94	5	55	45	0	0	54	0.99
14317849--14317874	7	3.7	7	100	0	52	26	0	0	73	0.84
14329876--14329939	3	20.3	3	87	6	83	32	3	0	64	1.10
14329868--14329937	15	4.5	15	87	8	95	32	4	0	62	1.14
14332216--14332307	36	2.6	35	75	1	94	48	9	22	18	1.77
14332416--14332489	35	2.1	35	82	9	89	52	9	18	18	1.72
14332596--14332696	35	2.9	34	82	2	130	56	12	14	15	1.68
14337341--14337378	20	1.9	20	94	0	67	42	5	10	42	1.62
14344381--14344426	3	15.3	3	95	0	83	30	0	2	67	1.03
14344425--14344461	3	12.3	3	100	0	74	35	32	0	32	1.58
14347157--14347183	3	9.0	3	100	0	54	66	0	0	33	0.92
14347185--14347212	4	7.0	4	100	0	56	50	25	0	25	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14347281--14347311	3	10.3	3	92	0	53	35	35	0	29	1.58
14347283--14347312	15	2.0	15	100	0	60	33	40	0	26	1.57
14349081--14349166	3	28.0	3	88	4	111	33	2	0	63	1.07
14350738--14350785	11	4.1	11	77	15	51	2	14	2	81	0.88
14353104--14353150	10	4.8	10	81	2	60	10	29	0	59	1.31
14353114--14353154	5	8.2	5	88	0	55	7	31	0	60	1.24
14353104--14353154	15	3.5	15	89	2	77	9	31	0	58	1.30
14353552--14354283	363	2.0	361	96	0	1356	40	10	15	33	1.82
14360956--14360984	14	2.1	14	100	0	58	27	13	13	44	1.82
14361244--14361290	2	23.5	2	100	0	94	0	51	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117