genome.fa.s101.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  86  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15569666--15569708	19	2.3	19	79	0	50	65	0	6	27	1.18
15569697--15569737	18	2.3	19	87	8	59	73	7	2	17	1.17
15570997--15571179	69	2.6	69	85	4	226	34	18	15	31	1.92
15571533--15571791	55	4.7	55	74	6	195	41	12	21	24	1.87
15573008--15573053	22	2.1	22	100	0	92	43	8	23	23	1.82
15576040--15576073	18	1.9	17	88	5	50	32	2	8	55	1.45
15577029--15577175	51	2.9	51	82	0	186	38	15	9	36	1.80
15580494--15580576	11	7.8	11	71	15	68	39	1	8	50	1.40
15584813--15584842	14	2.1	14	93	0	51	46	36	6	10	1.64
15587706--15587744	15	2.7	14	84	4	51	84	0	2	12	0.72
15587706--15587745	7	5.6	7	82	5	53	82	0	2	15	0.77
15587876--15588158	129	2.3	125	82	11	316	45	6	11	35	1.67
15588637--15588682	18	2.4	18	82	7	56	34	2	0	63	1.07
15588642--15588701	20	2.9	20	82	9	68	35	5	1	58	1.30
15588719--15588767	22	2.5	19	78	15	55	42	2	2	53	1.24
15589147--15589209	32	2.0	32	81	12	76	57	3	3	36	1.31
15589319--15589379	23	2.8	22	80	7	61	54	1	3	40	1.27
15595996--15596034	18	2.0	20	85	9	55	66	5	2	25	1.25
15599550--15599741	6	31.2	6	71	12	72	21	5	3	69	1.23
15599551--15599740	12	14.9	12	69	21	86	21	5	3	69	1.24
15599629--15599732	21	5.0	21	70	21	67	17	6	3	72	1.22
15599614--15599741	6	24.0	5	74	17	75	19	6	3	71	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15599552--15599681	64	2.1	64	81	11	153	23	4	3	68	1.25
15599620--15599747	18	7.6	17	74	18	99	18	7	3	70	1.26
15599651--15599772	62	2.0	61	79	12	133	18	6	4	69	1.29
15600612--15600654	5	9.2	5	80	14	56	18	0	2	79	0.85
15600615--15600657	14	3.1	14	86	6	70	16	0	4	79	0.90
15600612--15600708	13	7.2	13	75	19	67	23	0	4	72	1.02
15600612--15600673	27	2.3	27	88	8	90	22	0	3	74	0.96
15600825--15601108	99	2.9	98	81	5	344	45	7	10	36	1.67
15604911--15605120	74	2.9	72	76	10	189	36	11	4	47	1.60
15606064--15606124	18	3.4	18	84	4	88	65	1	13	19	1.34
15606068--15606118	17	2.9	17	88	2	75	64	0	15	19	1.29
15606482--15606610	33	3.9	32	75	15	120	48	11	17	23	1.79
15606687--15606893	97	2.1	100	80	10	232	47	11	17	23	1.80
15606629--15607269	33	19.7	33	74	6	371	43	10	20	26	1.83
15606637--15607152	164	3.2	160	73	8	409	43	10	20	25	1.83
15607106--15607188	31	2.9	28	87	10	130	43	12	21	22	1.86
15608889--15608942	7	7.4	7	81	8	63	31	3	0	64	1.11
15608896--15608938	8	5.6	8	86	10	63	32	2	0	65	1.06
15608896--15608940	15	3.0	15	86	0	72	35	2	0	62	1.08
15611622--15611696	37	2.1	35	87	5	105	45	6	12	36	1.68
15611621--15611706	37	2.5	35	73	12	88	43	6	10	39	1.66
15611933--15611972	18	2.2	18	86	8	55	30	7	2	60	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15613694--15613722	13	2.2	13	100	0	58	44	0	6	48	1.29
15621583--15621652	27	2.7	26	76	8	70	30	0	12	57	1.36
15622046--15622084	17	2.3	17	81	0	51	43	10	0	46	1.37
15628617--15628678	21	3.0	21	68	25	60	40	1	12	45	1.52
15631958--15631997	21	1.9	21	94	0	71	15	27	10	47	1.77
15632922--15632947	11	2.4	11	100	0	52	30	0	23	46	1.53
15644664--15644787	65	1.9	65	80	9	146	21	19	5	53	1.66
15646892--15646936	22	2.0	22	91	0	72	44	6	11	37	1.66
15650588--15650644	23	2.4	25	88	5	82	47	17	21	14	1.82
15650792--15650835	22	2.0	22	95	0	79	43	13	11	31	1.80
15655403--15655501	51	1.9	51	85	0	135	33	15	10	41	1.80
15656004--15656043	20	2.0	20	100	0	80	25	15	25	35	1.94
15657693--15658274	290	2.0	290	96	0	1083	40	13	17	28	1.88
15659437--15659480	20	2.2	20	83	4	52	13	15	22	47	1.81
15661591--15661634	20	2.1	22	83	8	56	29	0	2	68	1.02
15661841--15661908	30	2.3	30	92	5	111	36	16	4	42	1.68
15666588--15666633	24	1.9	24	86	0	65	28	0	19	52	1.47
15667578--15667645	30	2.3	30	84	0	91	38	17	4	39	1.70
15673589--15673620	16	1.9	17	93	6	57	0	18	0	81	0.70
15673588--15673627	16	2.4	17	83	8	55	0	22	2	75	0.93
15678076--15678115	19	2.1	19	85	0	53	20	15	30	35	1.93
15681335--15681386	27	1.9	27	84	7	70	46	17	13	23	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15681360--15681555	46	4.3	46	78	3	216	48	17	12	21	1.80
15681398--15681564	91	1.8	91	93	2	291	47	17	12	21	1.81
15684046--15684486	134	3.2	135	77	4	399	52	10	9	27	1.67
15691342--15691465	61	2.0	61	100	0	248	37	16	16	29	1.91
15692866--15692942	36	2.1	36	85	7	100	28	24	3	42	1.72
15711700--15712223	279	1.9	279	91	0	861	32	16	17	33	1.93
15723328--15723378	21	2.5	21	90	3	77	21	23	7	47	1.77
15724129--15724418	142	2.0	142	85	2	384	43	12	10	34	1.76
15724266--15725654	156	8.8	158	72	11	489	44	14	8	32	1.76
15724438--15725356	303	3.0	298	79	6	896	44	15	8	31	1.77
15724842--15725655	317	2.6	312	80	6	838	45	13	7	33	1.73
15724842--15725655	159	5.1	161	77	7	688	45	13	7	33	1.73
15727898--15727936	18	2.2	17	86	4	51	64	0	20	15	1.30
15728858--15728893	18	1.9	19	94	5	65	72	0	0	27	0.85
15729094--15729127	7	4.9	7	92	0	50	50	0	5	44	1.26
15731404--15731450	21	2.2	22	84	3	60	51	0	0	48	1.00
15731417--15731473	22	2.7	21	77	20	57	43	5	0	50	1.24
15732095--15732177	29	2.9	29	72	16	82	36	2	2	59	1.24
15732802--15732873	30	2.4	30	79	2	92	47	1	8	43	1.42
15733332--15733362	15	2.1	15	93	0	53	58	0	0	41	0.98
15735247--15735318	30	2.4	30	74	2	74	47	4	8	40	1.53
15735559--15735646	45	1.9	46	90	2	142	26	9	6	57	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15735689--15735718	10	2.8	11	90	10	53	26	16	0	56	1.40
15735692--15735724	10	3.4	10	91	4	50	24	15	0	60	1.35
15736356--15736408	16	3.2	16	78	5	61	49	3	0	47	1.19
15737241--15737274	2	17.0	2	100	0	68	50	0	0	50	1.00
15738163--15738220	21	2.8	21	76	10	57	39	5	8	46	1.57
15742995--15743115	62	2.0	62	81	3	145	39	9	13	38	1.76
15743041--15743278	125	1.9	125	80	6	277	35	13	14	36	1.86
15743598--15743635	2	19.0	2	89	10	60	50	0	2	47	1.15
15747002--15747054	25	2.1	25	96	0	97	33	18	26	20	1.96
15750918--15750951	2	17.0	2	100	0	68	50	50	0	0	1.00
15751049--15751103	28	2.0	28	88	0	83	43	20	7	29	1.78
15754634--15754990	176	2.0	175	91	0	579	38	13	10	37	1.79
15755014--15755391	139	2.7	134	79	10	330	41	15	5	37	1.70
15755135--15755292	41	3.8	41	75	12	151	41	16	5	36	1.72
15755122--15755415	14	23.2	14	65	20	105	41	14	5	39	1.69
15755191--15755260	21	3.2	21	81	13	88	42	14	5	37	1.69
15755189--15755252	21	2.8	23	83	11	96	40	14	4	40	1.66
15755234--15755346	54	2.1	54	85	3	147	42	11	7	38	1.68
15755093--15755391	139	2.1	141	90	1	467	41	14	6	38	1.70
15755327--15755416	24	3.9	24	85	5	123	41	11	3	44	1.56
15755287--15755498	110	1.9	109	85	2	291	41	11	4	41	1.62
15755436--15755478	21	2.0	21	95	0	77	41	9	6	41	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15755375--15755538	86	1.9	86	87	0	238	42	12	6	39	1.67
15758017--15758045	9	3.3	9	95	4	51	10	6	0	82	0.83
15772329--15772358	14	2.1	14	100	0	60	66	0	0	33	0.92
15773150--15773201	24	2.2	24	93	3	88	21	0	5	73	1.04
15773160--15773206	24	2.0	24	91	4	78	27	0	4	68	1.08
15774296--15774326	12	2.6	12	94	0	53	41	16	9	32	1.80
15787226--15787262	18	2.2	16	90	9	56	0	10	0	89	0.49
15787226--15787260	13	2.7	13	86	0	52	0	11	0	88	0.51
15787158--15787305	69	2.1	71	90	5	230	29	11	2	56	1.49
15787800--15787863	13	4.9	13	71	16	53	23	0	32	43	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117