genome.fa.s101.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  94  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16851835--16851914	24	3.3	24	76	8	83	0	22	0	77	0.77
16854461--16854523	8	8.2	8	84	7	78	22	0	25	52	1.47
16854461--16854524	23	2.9	22	90	2	92	23	0	25	51	1.48
16854461--16854524	15	4.3	15	84	7	85	23	0	25	51	1.48
16854461--16854515	7	7.4	7	85	6	65	21	0	27	50	1.49
16854840--16854873	3	11.3	3	93	0	59	38	0	29	32	1.58
16854872--16854904	3	11.0	3	100	0	66	66	0	0	33	0.92
16854960--16854992	16	2.1	16	94	0	57	60	6	6	27	1.44
16855885--16855933	25	2.0	25	84	7	66	2	22	4	71	1.13
16859205--16859243	19	2.1	18	85	4	51	66	0	2	30	1.05
16859403--16859477	39	1.9	38	89	2	114	56	2	8	33	1.43
16864110--16864150	21	1.9	22	90	5	66	34	7	14	43	1.73
16864354--16864389	19	1.9	19	94	5	65	55	8	19	16	1.66
16872082--16872113	15	2.0	17	88	11	50	68	0	3	28	1.04
16879729--16879796	29	2.4	30	80	9	79	19	7	29	44	1.77
16879745--16879796	14	3.6	14	80	14	61	21	7	26	44	1.79
16879711--16879781	21	3.3	20	72	20	63	21	4	30	43	1.71
16880056--16880129	3	24.7	3	84	0	76	43	1	21	33	1.61
16880056--16880138	6	14.3	6	81	7	64	45	1	19	33	1.58
16880140--16880170	3	10.3	3	92	0	53	67	29	0	3	1.06
16881609--16882011	145	2.8	143	76	4	371	43	11	12	32	1.78
16882394--16882458	26	2.3	26	84	10	76	12	1	9	76	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16882418--16882469	26	2.0	26	85	7	70	7	0	13	78	0.94
16888728--16888784	15	3.8	15	72	9	53	40	42	1	15	1.58
16888743--16888816	15	5.2	13	73	19	58	44	33	2	18	1.64
16888728--16888811	7	11.4	7	77	11	71	42	36	2	17	1.63
16889850--16889905	29	2.0	29	89	3	87	7	8	1	82	0.92
16889847--16889903	23	2.6	22	82	15	66	7	8	1	82	0.91
16891023--16891125	37	2.8	37	78	14	113	0	19	0	78	0.86
16891024--16891116	22	4.5	22	67	25	60	1	20	1	77	0.89
16891029--16891125	28	3.6	29	73	19	77	1	18	1	79	0.85
16891038--16891124	14	5.9	14	74	18	79	1	18	1	79	0.86
16891067--16891113	20	2.5	20	80	16	55	2	21	0	76	0.89
16891031--16891119	12	7.5	11	71	16	54	1	17	1	79	0.85
16894424--16894453	4	7.5	4	92	0	51	23	26	0	50	1.50
16896218--16896269	7	7.0	7	77	12	50	25	1	26	46	1.63
16896206--16896313	15	7.2	15	72	8	76	25	3	25	46	1.69
16896206--16896277	23	3.2	23	76	7	76	25	2	23	48	1.64
16896294--16896328	15	2.4	15	95	4	63	14	0	34	51	1.42
16896585--16896621	3	12.0	3	94	5	65	64	0	2	32	1.07
16897714--16898086	193	1.9	193	96	1	694	29	14	15	40	1.87
16898170--16899316	142	8.0	141	72	12	644	42	12	12	33	1.80
16898170--16899288	145	7.7	142	71	15	681	42	12	12	33	1.79
16898210--16899371	579	2.0	581	97	0	2220	41	12	12	33	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16901570--16901640	5	13.6	5	72	19	56	21	1	4	73	1.08
16901591--16901628	14	2.5	15	83	8	51	18	0	2	78	0.86
16901557--16901620	22	2.9	23	71	17	64	18	1	4	75	1.06
16901583--16901639	19	3.1	19	76	19	66	19	0	5	75	0.99
16901564--16901655	36	2.6	36	76	10	98	21	2	4	71	1.14
16901706--16901745	19	2.2	18	86	4	53	67	0	2	30	1.04
16901904--16901978	39	1.9	38	86	2	105	56	4	8	32	1.47
16908013--16908071	30	2.0	28	81	12	66	49	13	3	33	1.59
16909119--16909193	38	2.0	38	89	0	114	42	9	5	42	1.59
16909732--16909888	52	3.0	52	87	3	219	25	26	8	39	1.85
16909912--16909952	11	3.7	11	86	0	64	53	31	0	14	1.41
16909909--16909955	22	2.1	22	100	0	94	46	31	0	21	1.51
16913304--16913338	3	11.7	3	100	0	70	31	0	0	68	0.90
16920642--16920676	2	17.5	2	100	0	70	48	0	0	51	1.00
16922925--16922983	24	2.4	26	83	13	81	28	5	8	57	1.50
16925779--16926048	143	1.9	143	82	4	339	33	14	13	38	1.85
16927402--16927456	22	2.5	22	80	16	69	49	25	1	23	1.60
16928229--16928262	2	17.0	2	100	0	68	50	0	0	50	1.00
16929981--16930031	23	2.2	23	85	3	66	11	3	3	80	0.98
16930036--16930081	4	12.0	4	81	4	51	19	2	4	73	1.10
16930220--16930289	28	2.5	28	95	0	122	44	7	14	34	1.72
16934817--16934869	2	27.0	2	92	3	90	47	1	50	0	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16938896--16938933	1	38.0	1	100	0	76	100	0	0	0	0.00
16940204--16940270	25	2.7	24	77	9	62	53	1	4	40	1.30
16941276--16941328	25	2.2	24	86	3	70	37	5	0	56	1.23
16941666--16941703	18	2.1	19	90	5	60	23	10	2	63	1.39
16941694--16941741	25	1.9	25	86	0	69	27	14	4	54	1.59
16942320--16942391	34	2.1	34	82	5	83	40	8	9	41	1.68
16943389--16943419	3	10.3	3	100	0	62	35	0	0	64	0.94
16949576--16949648	36	2.0	36	100	0	146	45	24	5	24	1.74
16952775--16952819	17	2.5	17	85	7	54	15	2	2	80	0.92
16952775--16952826	18	2.9	17	86	13	61	13	3	3	78	1.02
16952824--16952873	4	13.0	4	82	4	59	20	2	4	74	1.08
16961677--16961745	20	3.4	20	76	19	63	60	0	0	39	0.97
16961729--16961755	14	1.9	14	100	0	54	66	0	0	33	0.92
16961688--16961741	12	5.1	10	79	18	56	62	0	0	37	0.95
16964729--16964801	2	36.5	2	100	0	146	49	0	50	0	1.00
16968803--16968840	1	38.0	1	100	0	76	100	0	0	0	0.00
16970113--16970178	24	2.7	24	90	4	96	56	1	4	37	1.29
16971181--16971232	24	2.2	24	89	0	77	40	1	0	57	1.10
16971197--16971240	12	3.7	12	79	11	54	40	0	0	59	0.98
16971197--16971244	15	3.4	15	83	13	66	41	0	0	58	0.98
16973877--16973902	13	2.0	13	100	0	52	38	7	7	46	1.61
16973973--16974017	19	2.4	19	82	10	56	22	6	0	71	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16974386--16974428	23	1.9	23	85	4	61	20	13	2	62	1.42
16975708--16975804	51	1.9	51	84	0	131	52	8	26	12	1.67
16979359--16979504	77	1.9	78	88	2	224	39	5	13	41	1.68
16984042--16984185	77	1.9	77	89	4	229	34	7	15	43	1.75
16985015--16985089	21	3.5	21	77	10	71	48	5	2	44	1.39
16985035--16985092	23	2.6	22	76	7	64	46	1	3	48	1.29
16985445--16985498	21	2.7	20	82	2	72	37	11	12	38	1.79
16985605--16985694	25	3.8	24	69	19	80	51	6	1	41	1.35
16985677--16985709	15	2.2	15	94	0	57	63	3	0	33	1.10
16985614--16985710	45	2.2	46	83	3	117	55	5	1	38	1.29
16986666--16986734	34	2.0	34	83	5	86	42	13	15	28	1.85
17018219--17018255	18	2.1	18	89	0	56	54	0	0	45	1.00
17020130--17020277	75	2.0	75	87	0	215	41	14	13	30	1.85
17020619--17020688	34	2.0	35	89	8	108	40	2	7	50	1.45
17020841--17020879	20	2.0	20	89	0	60	35	25	10	28	1.89
17021635--17021667	10	3.2	10	91	8	57	27	9	0	63	1.24
17026997--17027868	47	18.5	46	79	5	777	38	20	12	29	1.88
17028681--17028736	26	2.2	26	84	9	71	5	12	0	82	0.83
17035166--17035199	11	3.0	12	83	16	54	26	0	23	50	1.50
17039656--17039697	22	2.0	21	85	4	57	11	21	4	61	1.48
17049409--17049450	20	2.1	20	86	0	57	66	11	4	16	1.40
17051754--17051796	18	2.4	18	80	7	52	55	11	2	30	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17051769--17051867	21	4.1	24	70	23	75	55	12	0	32	1.37
17051774--17051830	24	2.5	24	83	8	75	57	14	0	28	1.37
17051774--17051866	45	1.9	49	83	16	124	55	12	0	31	1.37
17051786--17051891	24	4.2	25	72	20	78	56	10	1	31	1.44
17051848--17051893	23	2.0	24	91	4	76	58	8	4	28	1.47
17051997--17052046	18	2.7	18	81	3	55	84	2	4	10	0.84
17052528--17052571	22	2.0	22	87	12	65	61	27	2	9	1.38
17055074--17055113	19	2.1	19	90	0	62	82	0	5	12	0.82
17055999--17056033	18	1.9	18	88	0	52	22	0	0	77	0.78
17056065--17056337	136	2.0	136	94	0	483	32	15	15	36	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117