genome.fa.s101.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  113  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19509632--19509684	26	2.0	26	100	0	106	26	26	20	26	1.99
19510529--19510581	26	2.0	26	88	0	79	32	22	18	26	1.97
19504331--19513438	868	10.3	883	83	6	10286	25	24	24	25	2.00
19513810--19513862	26	2.0	26	96	0	97	28	24	20	26	1.99
19513836--19517437	894	4.1	873	82	6	4241	26	24	23	25	2.00
19515572--19515627	26	2.2	26	90	0	85	32	23	16	28	1.96
19516469--19516521	26	2.0	26	85	7	72	33	22	15	28	1.94
19517666--19520212	820	3.0	821	78	10	2494	25	25	24	24	2.00
19519151--19519183	11	3.0	11	100	0	66	18	27	36	18	1.94
19520042--19520666	321	1.9	321	89	1	957	25	23	23	27	2.00
19521125--19521177	26	2.0	26	96	0	97	28	26	18	26	1.98
19522887--19522939	26	2.0	26	96	0	97	28	26	18	26	1.98
19522914--19523175	131	2.0	130	85	2	355	22	25	28	23	1.99
19524759--19524811	26	2.0	26	96	0	97	28	26	18	26	1.98
19526535--19526587	26	2.0	26	85	7	72	30	22	16	30	1.96
19527437--19527489	26	2.0	26	92	0	88	30	26	16	26	1.97
19528310--19528362	26	2.0	26	100	0	106	26	26	20	26	1.99
19526561--19530921	898	4.9	864	81	8	4691	26	24	23	25	2.00
19530083--19530135	26	2.0	26	92	0	88	24	24	22	28	2.00
19531732--19531784	26	2.0	26	92	0	88	28	24	20	26	1.99
19533270--19533322	26	2.0	26	96	0	97	28	28	16	26	1.97
19531907--19534293	902	2.7	888	85	4	3141	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19534831--19539194	919	4.9	898	84	5	5171	26	24	23	26	2.00
19539184--19539221	12	3.2	12	96	0	67	26	34	28	10	1.90
19539836--19539888	26	2.0	26	92	0	88	24	24	20	30	1.99
19541239--19541290	26	2.0	26	100	0	104	26	26	19	26	1.99
19539748--19541845	706	3.0	711	81	6	2521	27	23	23	26	2.00
19544773--19544825	26	2.0	26	96	0	97	28	26	18	26	1.98
19545658--19545710	26	2.0	26	96	0	97	28	24	20	26	1.99
19546556--19546608	26	2.0	26	100	0	106	26	26	20	26	1.99
19547439--19547491	26	2.0	26	88	0	79	32	22	18	26	1.97
19548344--19548391	25	1.9	25	83	8	62	29	22	20	27	1.99
19543897--19549548	903	6.3	898	85	3	7230	25	24	24	25	2.00
19549045--19549069	12	2.1	12	100	0	50	0	64	28	8	1.22
19549247--19549299	26	2.0	26	92	0	88	28	24	20	26	1.99
19549914--19549966	26	2.0	26	96	0	97	28	24	20	26	1.99
19549549--19553510	903	4.4	899	83	4	4783	25	25	23	25	2.00
19549549--19553511	902	4.4	900	84	4	4998	25	25	23	25	2.00
19555131--19555183	26	2.0	26	85	0	70	32	26	16	24	1.97
19557223--19557275	26	2.0	26	92	0	88	28	24	18	28	1.98
19558114--19558166	26	2.0	26	92	0	88	28	24	18	28	1.98
19556445--19567122	907	11.7	893	69	15	4605	25	24	24	25	2.00
19558992--19560439	702	2.1	696	87	3	2074	26	23	22	27	2.00
19560898--19560958	26	2.4	26	91	5	99	32	24	16	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19562672--19562724	26	2.0	26	96	0	97	28	26	18	26	1.98
19562935--19562967	11	3.0	11	100	0	66	18	27	36	18	1.94
19562699--19562939	131	1.8	130	87	0	356	21	27	28	23	1.99
19564553--19564605	26	2.0	26	96	0	97	26	24	20	28	1.99
19565417--19565467	26	2.0	26	96	0	93	27	31	15	25	1.96
19566323--19566375	26	2.0	26	88	0	79	28	22	22	26	1.99
19566355--19568450	719	3.0	713	88	4	3025	26	24	23	26	2.00
19569470--19569527	26	2.2	26	96	3	107	27	25	20	25	1.99
19568630--19572012	901	3.8	881	86	4	4289	25	25	23	25	2.00
19571268--19571320	26	2.0	26	96	0	97	26	24	20	28	1.99
19573740--19573792	25	2.0	25	85	7	70	28	24	18	28	1.98
19572226--19575087	863	3.2	879	81	8	2877	26	23	23	25	2.00
19574609--19574658	26	1.9	26	91	0	82	28	24	18	30	1.97
19574303--19575858	770	2.0	773	87	3	2234	23	25	25	25	2.00
19578018--19578073	26	2.2	26	93	0	94	30	26	17	25	1.97
19577245--19584201	902	7.7	895	83	6	8231	26	24	23	25	2.00
19579818--19579870	26	2.0	26	92	0	88	30	24	18	26	1.98
19582518--19582567	26	1.9	26	87	0	73	28	26	18	28	1.98
19583417--19583472	27	2.1	27	96	0	103	32	26	16	25	1.96
19583444--19584910	714	2.1	713	87	2	2059	27	23	22	26	2.00
19585022--19585074	26	2.0	26	96	0	97	26	24	20	28	1.99
19584152--19585938	898	2.0	897	87	1	2593	25	25	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19585642--19586463	371	2.2	365	85	5	1070	20	30	26	22	1.98
19587497--19587564	7	9.6	7	78	9	66	77	2	4	14	1.04
19588211--19588280	7	9.6	7	75	9	59	75	2	5	15	1.11
19588890--19588973	15	5.6	15	74	13	50	79	2	5	11	1.00
19588948--19589009	32	1.9	33	86	3	90	79	3	6	11	1.04
19589106--19589175	32	2.2	32	80	7	79	71	5	11	11	1.30
19589592--19589676	30	2.9	29	73	20	70	75	2	8	14	1.13
19589539--19589676	59	2.3	60	81	7	149	73	3	5	16	1.16
19589638--19589707	7	10.3	7	76	4	54	77	2	4	15	1.05
19590320--19590442	7	16.9	7	71	9	68	74	3	6	15	1.15
19590320--19590452	23	6.0	22	70	11	67	74	3	6	15	1.17
19591053--19591189	22	6.2	22	69	19	63	74	2	8	15	1.14
19591054--19591088	18	2.0	18	88	5	54	77	0	8	14	0.99
19591105--19591174	7	9.6	7	80	9	77	78	1	4	15	0.98
19591111--19591173	16	4.4	14	74	21	51	77	0	4	17	0.93
19591105--19591174	31	2.4	27	83	11	77	78	1	4	15	0.98
19591053--19591174	14	8.4	14	70	13	77	76	1	6	15	1.07
19587476--19592352	735	6.8	730	93	4	8103	67	4	11	16	1.36
19591795--19591887	7	12.4	7	70	15	53	77	2	5	15	1.04
19591831--19591925	34	2.8	34	75	16	81	75	2	9	12	1.12
19592691--19592746	26	2.2	26	96	0	103	30	25	17	26	1.97
19593593--19593649	26	2.2	26	100	0	114	28	26	19	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19595398--19595450	26	2.0	26	92	0	88	30	26	18	24	1.98
19592357--19631784	899	43.3	904	77	9	32075	25	24	24	25	2.00
19596297--19596349	26	2.0	26	89	7	81	24	22	22	30	1.99
19598054--19598104	26	2.0	26	100	0	102	31	21	15	31	1.95
19598941--19598993	26	2.0	26	92	0	88	28	24	18	28	1.98
19600741--19600819	25	3.0	27	83	5	99	29	24	17	29	1.97
19601682--19601733	25	2.0	26	88	3	79	30	21	19	28	1.97
19603472--19603524	26	2.0	26	96	0	97	30	26	15	28	1.96
19605466--19605497	12	2.7	12	100	0	64	12	37	18	31	1.88
19605648--19605698	26	2.0	26	88	0	75	23	27	21	27	1.99
19607415--19607467	26	2.0	26	96	0	97	28	26	18	26	1.98
19608317--19608369	26	2.0	26	96	0	97	28	22	18	30	1.98
19610961--19611012	26	2.0	26	96	0	95	28	26	17	26	1.97
19611847--19611899	26	2.0	26	100	0	106	26	26	20	26	1.99
19612743--19612795	26	2.0	26	92	0	88	30	26	16	26	1.97
19613644--19613696	26	2.0	26	92	0	88	30	22	18	28	1.98
19614435--19614724	158	1.8	158	87	0	427	19	28	29	22	1.98
19614700--19614752	26	2.0	26	92	0	88	24	24	20	30	1.99
19615604--19615656	26	2.0	26	100	0	106	26	26	20	26	1.99
19616506--19616558	26	2.0	26	92	0	88	26	22	22	28	1.99
19617392--19617442	26	2.0	26	96	0	93	29	21	19	29	1.98
19618271--19618321	26	2.0	26	92	0	84	33	25	13	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19619144--19619196	26	2.0	26	92	0	88	28	22	20	28	1.99
19620044--19620093	26	1.9	26	91	0	82	26	26	18	30	1.98
19620927--19620978	26	2.0	25	92	3	86	30	23	17	28	1.97
19622723--19622775	26	2.0	26	96	0	97	28	26	18	26	1.98
19623620--19623672	26	2.0	26	92	0	88	24	28	20	26	1.99
19624519--19624595	26	3.0	26	90	0	127	32	25	12	28	1.93
19625438--19625492	26	2.1	27	89	3	85	21	27	20	30	1.98
19626075--19626194	38	3.1	38	95	1	213	25	39	14	21	1.91
19626422--19626473	26	2.0	26	96	3	97	26	25	21	26	1.99
19628213--19628265	26	2.0	26	96	0	97	28	26	18	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117