genome.fa.s101.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  89  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16184766--16184819	17	3.2	17	77	10	58	25	5	0	68	1.11
16184794--16184836	20	2.1	21	83	12	54	25	6	2	65	1.30
16185567--16185614	9	5.4	9	78	14	55	18	2	2	77	0.97
16185560--16185612	14	3.4	17	69	26	53	16	3	1	77	1.01
16189065--16190414	674	2.0	673	95	0	2448	39	12	20	28	1.88
16192974--16193023	25	2.0	24	84	3	64	74	0	22	4	0.99
16193020--16193056	20	1.9	20	94	5	67	75	0	21	2	0.92
16192974--16193054	33	2.5	33	81	6	92	74	0	22	3	0.98
16192980--16193054	32	2.3	32	83	4	87	76	0	21	2	0.92
16194828--16194960	42	3.2	40	83	5	160	24	12	18	45	1.83
16194996--16195173	40	4.2	41	80	11	209	23	15	19	41	1.90
16202552--16202613	18	3.4	18	86	0	70	38	12	12	35	1.82
16202600--16202656	15	3.7	15	79	9	71	42	8	14	35	1.76
16202910--16203150	108	2.2	108	87	1	340	35	17	10	36	1.84
16203025--16203063	20	2.0	20	84	0	51	35	17	10	35	1.84
16203209--16203401	25	8.5	21	81	10	181	39	14	5	40	1.68
16203209--16203370	25	6.9	24	86	7	226	38	14	4	41	1.68
16203209--16203373	71	2.3	70	94	2	294	40	14	4	40	1.67
16204617--16204745	7	17.7	7	73	17	95	10	13	0	75	1.03
16204607--16204745	22	6.3	23	74	16	116	11	13	0	74	1.06
16204665--16204730	34	1.9	34	87	6	98	7	15	0	77	0.98
16204596--16204771	50	3.6	48	74	18	168	10	14	0	74	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16207752--16207780	15	1.9	15	100	0	58	41	10	20	27	1.85
16213603--16213628	13	2.0	13	100	0	52	30	23	23	23	1.99
16213864--16214406	145	3.7	140	76	8	439	41	12	13	32	1.82
16213864--16214406	290	1.9	291	81	6	663	41	12	13	32	1.82
16215202--16215257	17	2.9	20	85	15	66	14	5	8	71	1.29
16215229--16215267	17	2.3	17	90	0	60	12	7	7	71	1.29
16216409--16216545	24	5.6	24	72	13	102	36	13	6	43	1.70
16216405--16216520	24	4.8	25	76	10	107	36	10	6	46	1.65
16217348--16217820	59	7.8	59	86	9	550	33	12	7	47	1.69
16217892--16217934	12	3.5	12	84	6	50	79	4	2	13	1.00
16217879--16217934	25	2.2	26	83	3	69	73	7	1	17	1.15
16218835--16218868	17	2.1	17	88	5	52	73	5	2	17	1.16
16218901--16219005	16	6.6	16	69	20	60	64	7	0	27	1.20
16218873--16218996	35	3.6	34	74	16	103	62	6	0	30	1.26
16219067--16219116	20	2.5	20	90	3	73	22	30	26	22	1.99
16220093--16220169	29	2.6	29	77	4	82	45	1	2	50	1.23
16220093--16220170	15	5.2	15	72	10	61	44	1	2	51	1.23
16220191--16220245	29	1.9	28	85	3	74	56	1	3	38	1.28
16222942--16222988	18	2.7	18	83	6	53	44	2	4	48	1.34
16227339--16227394	29	1.9	29	82	13	71	42	0	0	57	0.99
16228212--16228258	2	23.5	2	95	0	85	46	0	2	51	1.13
16228432--16228486	20	2.7	20	77	2	56	43	1	5	49	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16228647--16228723	21	3.4	21	73	20	66	37	7	6	48	1.58
16228690--16228750	21	3.0	20	70	13	52	40	9	8	40	1.68
16228777--16228816	21	1.9	21	85	10	55	30	10	15	45	1.78
16229136--16229311	66	2.7	63	78	7	174	40	6	9	43	1.63
16229134--16229262	44	2.9	44	80	4	136	40	6	7	44	1.60
16229105--16229311	22	9.4	21	71	11	121	39	7	9	43	1.64
16229496--16229545	21	2.3	21	83	10	66	40	8	4	48	1.51
16229499--16229732	22	10.6	22	68	14	124	38	9	5	47	1.58
16230066--16230119	22	2.5	22	84	0	72	40	11	5	42	1.64
16230137--16230190	22	2.4	23	81	9	76	35	3	12	48	1.60
16230399--16230495	44	2.2	45	76	12	103	37	7	6	49	1.55
16230530--16230587	21	2.7	20	76	12	62	36	3	10	50	1.54
16230656--16230698	22	2.0	22	86	9	61	37	9	2	51	1.47
16230733--16230812	22	3.7	22	79	3	72	42	11	2	43	1.53
16231903--16231952	3	16.7	3	91	8	84	34	0	0	66	0.92
16232348--16232401	25	2.2	25	83	6	65	40	3	16	38	1.66
16232410--16232477	32	2.2	32	84	7	86	33	23	16	26	1.95
16232535--16232579	20	2.3	19	80	3	54	28	28	15	26	1.96
16232905--16232954	26	1.9	26	84	8	66	14	4	4	78	1.05
16232978--16233059	5	16.8	5	73	20	59	15	4	1	78	0.99
16232977--16233020	6	7.5	6	80	14	56	13	2	2	81	0.88
16232977--16233058	29	2.9	28	80	10	78	15	4	1	78	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16233088--16233313	59	3.8	59	85	5	321	45	7	13	33	1.72
16233067--16233374	118	2.5	120	83	9	388	47	6	12	33	1.67
16233412--16233437	13	2.0	13	100	0	52	15	0	7	76	0.99
16234440--16234995	57	9.6	57	84	10	722	33	13	8	44	1.74
16234675--16234763	27	3.2	27	62	20	65	37	14	6	41	1.72
16234440--16235011	115	4.9	115	87	9	776	33	12	8	44	1.73
16234440--16235011	231	2.5	227	87	8	784	33	12	8	44	1.73
16235083--16235149	20	3.4	19	78	13	57	83	2	5	7	0.89
16235080--16235129	12	4.2	12	82	7	57	80	4	4	12	1.00
16235464--16235519	19	2.9	19	76	5	58	30	19	25	25	1.98
16235651--16235703	25	2.1	25	86	6	72	43	16	5	33	1.72
16235996--16236055	23	2.5	24	78	5	68	65	1	10	23	1.32
16236060--16236114	22	2.5	22	85	8	76	76	0	3	20	0.94
16236427--16236471	13	3.5	12	85	11	54	2	8	4	84	0.84
16236351--16236599	135	1.9	130	81	9	306	24	16	12	46	1.82
16236550--16236613	1	64.0	1	80	0	74	0	1	7	90	0.51
16236550--16236613	11	5.7	11	87	8	94	0	1	7	90	0.51
16236550--16236613	23	2.8	22	88	11	94	0	1	7	90	0.51
16236551--16236611	31	2.0	31	93	0	104	0	1	8	90	0.53
16236620--16237363	82	9.1	81	91	6	1057	38	20	17	22	1.93
16236620--16237363	123	6.0	122	91	5	1109	38	20	17	22	1.93
16236620--16237363	205	3.6	201	91	5	1117	38	20	17	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16238584--16238655	30	2.3	29	86	6	90	6	15	0	77	0.96
16238609--16238650	10	4.2	10	87	0	66	2	11	0	85	0.68
16238614--16238647	18	1.9	17	88	5	50	2	11	0	85	0.71
16242482--16243094	113	5.3	111	89	7	906	34	13	7	44	1.73
16242711--16242799	27	3.2	27	62	20	65	37	14	5	42	1.69
16242482--16243094	170	3.5	169	92	6	968	34	13	7	44	1.73
16242482--16243094	57	10.6	57	90	7	947	34	13	7	44	1.73
16243678--16243744	31	2.2	31	83	5	82	28	20	17	32	1.96
16244091--16244151	23	2.6	23	78	5	59	63	3	9	22	1.39
16244120--16244194	32	2.6	26	72	24	62	70	2	5	21	1.19
16244161--16244249	18	5.0	17	68	18	56	70	1	4	23	1.12
16244156--16244209	22	2.5	22	82	14	67	74	0	3	22	0.98
16249098--16249145	24	2.0	24	91	0	78	41	12	25	20	1.87
16254338--16254384	18	2.7	18	83	6	53	44	2	4	48	1.34
16258410--16258598	101	1.9	100	85	7	267	38	13	4	42	1.66
16258510--16258664	58	2.7	58	91	0	247	38	9	5	46	1.61
16258689--16258762	18	4.5	17	70	18	59	67	2	2	27	1.17
16259196--16259224	13	2.1	14	93	6	51	75	3	0	20	0.94
16259497--16259601	24	4.4	23	80	12	106	59	1	4	34	1.30
16259553--16259635	20	4.3	19	74	14	64	65	1	1	32	1.08
16259474--16259623	24	6.4	24	72	14	100	59	3	4	33	1.32
16259474--16259624	48	3.2	47	79	11	159	59	3	3	33	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16259545--16259637	37	2.5	35	73	18	82	64	1	2	32	1.12
16259545--16259638	34	2.7	34	78	8	91	64	1	2	31	1.12
16259843--16260231	86	4.5	86	75	4	311	43	20	12	23	1.86
16259843--16260177	43	7.7	43	75	7	259	42	21	12	22	1.87
16260499--16260605	43	2.4	44	76	11	103	39	14	8	38	1.76
16261899--16261997	8	11.6	8	75	15	58	9	15	0	75	1.03
16261901--16261995	18	5.3	18	77	11	79	8	14	0	76	1.00
16261903--16261986	17	4.8	17	74	20	59	8	13	0	78	0.96
16261912--16261991	9	8.9	9	78	9	74	10	12	0	77	0.99
16264610--16264640	15	2.0	16	93	6	55	6	19	0	74	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117