genome.fa.s101.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  106  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18519415--18519467	26	2.0	26	96	0	97	28	20	26	24	1.99
18520316--18520368	26	2.0	26	85	0	70	28	18	24	28	1.98
18519101--18522160	916	3.4	903	85	3	4304	25	23	24	25	2.00
18521239--18521291	26	2.0	26	96	0	97	28	20	26	24	1.99
18521419--18522872	713	2.0	713	86	3	2059	26	22	23	27	1.99
18522847--18522898	26	2.0	26	85	3	70	28	21	23	26	1.99
18522112--18528358	897	7.0	892	88	2	8173	25	23	24	26	2.00
18526425--18526477	26	2.0	26	92	0	88	28	15	24	32	1.95
18527319--18527370	26	2.0	26	100	0	104	26	19	26	26	1.99
18528211--18528263	26	2.0	26	92	0	88	28	18	24	28	1.98
18529927--18529979	26	2.0	26	100	0	106	26	20	26	26	1.99
18533292--18533342	26	2.0	26	96	0	93	27	13	29	29	1.94
18530803--18534959	892	4.6	890	82	9	4641	25	22	24	26	2.00
18535778--18535830	26	2.0	26	96	0	97	24	20	26	28	1.99
18537217--18537269	26	2.0	26	96	0	97	26	18	26	28	1.98
18538097--18538151	26	2.2	25	83	3	65	34	18	20	27	1.95
18538987--18539039	26	2.0	26	96	0	97	26	22	24	26	2.00
18536568--18543531	904	7.8	900	85	3	8903	25	23	24	25	2.00
18539892--18539942	26	2.0	26	88	0	75	31	17	25	25	1.97
18540797--18540849	26	2.0	26	96	0	97	26	18	26	28	1.98
18542494--18542526	11	3.0	11	95	0	57	12	36	33	18	1.88
18542607--18542659	26	2.0	26	85	0	70	26	18	28	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18545058--18545107	26	1.9	26	92	8	84	28	14	32	26	1.94
18543483--18546700	859	3.7	871	84	5	3971	25	23	23	26	2.00
18545014--18546716	894	1.9	906	86	4	2436	25	24	24	26	2.00
18548436--18548488	26	2.0	26	96	0	97	26	18	26	28	1.98
18549332--18549384	26	2.0	26	96	0	97	26	18	26	28	1.98
18547561--18550254	896	3.0	891	88	3	3971	25	23	25	25	2.00
18551104--18553443	720	3.2	717	87	3	3231	25	23	24	26	2.00
18553947--18554343	59	6.7	57	85	9	505	32	15	8	43	1.76
18553947--18554346	116	3.4	117	90	6	560	32	15	8	43	1.76
18554786--18554823	20	1.9	20	94	0	67	23	18	26	31	1.97
18554787--18554831	20	2.3	20	88	3	65	26	22	24	26	2.00
18557144--18557196	26	2.0	26	92	0	88	28	18	24	28	1.98
18558039--18560912	710	4.0	713	84	6	3663	26	22	23	26	2.00
18560887--18560938	25	2.0	26	96	3	97	26	21	25	26	1.99
18562507--18562559	26	2.0	26	92	0	88	28	20	22	28	1.99
18562663--18564871	719	3.1	712	88	2	3153	26	22	23	27	2.00
18568304--18568355	26	2.0	25	92	3	86	30	19	23	26	1.98
18569205--18569257	26	2.0	26	100	0	106	26	20	26	26	1.99
18567434--18580222	896	14.5	893	84	4	15447	25	23	25	25	2.00
18570096--18570148	26	2.0	26	88	0	79	30	18	22	28	1.98
18571860--18571912	26	2.0	26	96	0	97	26	18	26	28	1.98
18573628--18573679	26	2.0	26	92	0	86	26	19	28	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18576250--18576302	26	2.0	26	96	0	97	28	20	26	24	1.99
18578028--18578080	26	2.0	26	88	0	79	26	20	24	28	1.99
18578922--18578974	26	2.0	26	88	0	79	26	16	28	28	1.97
18579784--18579833	26	1.9	26	100	0	100	32	20	24	24	1.98
18577819--18580215	894	2.7	863	84	5	3019	25	24	25	24	2.00
18581349--18581401	26	2.0	26	92	0	88	26	16	26	30	1.97
18582502--18582557	26	2.2	26	93	0	94	30	19	19	30	1.97
18584306--18584358	26	2.0	26	96	0	97	28	20	24	26	1.99
18585210--18585262	26	2.0	26	92	0	88	24	20	26	28	1.99
18582528--18591480	874	10.1	872	82	6	10203	24	24	25	25	2.00
18588766--18588818	26	2.0	26	96	0	97	26	18	26	28	1.98
18590528--18590578	26	2.0	26	92	0	84	29	17	23	29	1.97
18593400--18593451	26	2.0	26	96	0	95	26	17	26	28	1.97
18594272--18594324	26	2.0	26	92	0	88	28	18	24	28	1.98
18596033--18596085	26	2.0	26	92	0	88	28	18	24	28	1.98
18591757--18597856	893	6.9	895	84	5	7271	25	23	24	25	2.00
18599442--18599494	26	2.0	26	96	0	97	26	22	24	26	2.00
18597827--18600617	900	3.1	899	90	1	4301	26	23	24	25	2.00
18600341--18600393	26	2.0	26	96	0	97	26	22	24	26	2.00
18600939--18600991	26	2.0	26	96	0	97	26	18	26	28	1.98
18601832--18601881	26	1.9	26	91	0	82	32	14	28	26	1.94
18600621--18602954	893	2.6	889	85	3	3124	26	24	24	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18602716--18602768	26	2.0	26	85	7	72	30	16	26	26	1.97
18604066--18604118	26	2.0	26	100	0	106	26	20	26	26	1.99
18605863--18605915	26	2.0	26	85	0	70	30	20	24	24	1.99
18603302--18606775	895	3.9	894	86	3	4694	25	24	24	25	2.00
18606807--18606841	4	8.8	4	87	0	52	2	25	68	2	1.17
18607457--18607507	26	2.0	26	84	7	68	29	13	31	25	1.94
18607624--18609814	714	3.1	715	90	2	3351	25	23	24	26	2.00
18610685--18610737	26	2.0	26	96	0	97	28	15	26	30	1.96
18611428--18611480	26	2.0	26	88	0	79	26	15	24	33	1.95
18609973--18611512	743	2.1	739	87	2	2268	25	22	25	27	2.00
18610711--18613089	890	2.7	860	86	3	3103	25	23	24	26	2.00
18617666--18617716	26	2.0	26	84	3	68	21	7	19	50	1.72
18618130--18618180	26	2.0	26	96	0	93	29	17	23	29	1.97
18613119--18623351	900	11.6	887	85	5	12364	25	23	24	26	2.00
18620763--18620815	26	2.0	26	92	0	88	28	18	24	28	1.98
18622503--18622555	26	2.0	26	96	0	97	26	18	26	28	1.98
18623931--18623983	26	2.0	26	96	0	97	28	18	26	26	1.98
18624836--18624888	26	2.0	26	92	0	88	26	20	26	26	1.99
18625732--18625783	26	2.0	26	88	3	79	28	23	19	28	1.98
18623346--18632017	897	9.7	899	85	3	11085	25	24	24	25	2.00
18626634--18626686	26	2.0	26	92	0	88	26	16	26	30	1.97
18627532--18627583	26	2.0	25	88	3	77	30	19	23	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18628430--18628482	26	2.0	26	92	0	88	26	20	22	30	1.98
18630190--18630265	26	2.9	26	98	0	143	28	15	26	28	1.96
18631116--18631168	26	2.0	26	96	0	97	26	18	26	28	1.98
18632697--18632773	26	3.0	26	98	0	145	27	18	25	28	1.98
18633605--18633657	26	2.0	26	92	0	88	26	18	26	28	1.98
18634483--18634535	26	2.0	26	85	7	72	28	20	26	24	1.99
18631972--18637178	873	5.8	882	85	5	6485	25	23	24	25	2.00
18636262--18636314	26	2.0	26	92	0	88	30	20	22	26	1.98
18640308--18640360	26	2.0	26	88	0	79	26	18	24	30	1.98
18639446--18641896	904	2.7	889	86	3	3310	25	23	24	26	2.00
18643592--18643644	26	2.0	26	100	0	106	30	20	22	26	1.98
18645202--18645254	26	2.0	26	92	0	88	26	22	22	28	1.99
18646085--18646137	26	2.0	26	96	0	97	28	20	24	26	1.99
18644485--18647749	883	3.7	887	85	4	4354	25	23	24	26	2.00
18646980--18647032	26	2.0	26	92	0	88	30	20	22	26	1.98
18650086--18650138	26	2.0	26	92	0	88	30	20	22	26	1.98
18648441--18650843	898	2.7	899	89	1	3649	25	23	24	26	2.00
18651566--18651617	26	2.0	26	96	0	95	28	19	25	26	1.98
18652470--18652522	26	2.0	26	92	0	88	30	20	22	26	1.98
18650907--18656050	893	5.8	889	84	4	6319	25	24	23	26	2.00
18653346--18653405	26	2.4	26	86	5	79	26	18	26	28	1.98
18650908--18655973	884	5.7	876	84	5	5824	25	24	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18656327--18656351	12	2.1	12	100	0	50	32	8	16	44	1.76
18656670--18656722	26	2.0	26	92	0	88	30	20	24	24	1.99
18657960--18659297	666	2.0	669	87	2	1954	25	24	24	26	2.00
18659616--18659667	26	2.0	26	92	0	86	28	17	25	28	1.97
18660397--18660446	26	1.9	26	100	0	100	30	16	24	30	1.96
18660423--18660783	157	2.3	157	84	2	465	23	29	27	19	1.98
18661458--18661510	26	2.0	26	85	0	70	30	20	24	24	1.99
18664014--18664063	26	1.9	26	95	0	91	26	24	26	24	2.00
18664916--18664968	26	2.0	26	96	0	97	26	18	26	28	1.98
18663600--18667317	910	4.2	864	81	8	3847	25	23	24	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117