genome.fa.s101.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  99  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17604934--17605356	185	2.3	185	82	2	510	24	28	25	21	1.99
17606046--17606098	26	2.0	26	88	0	79	26	18	26	28	1.98
17606932--17606984	26	2.0	26	92	0	88	26	16	26	30	1.97
17609590--17609642	26	2.0	26	88	0	79	30	16	24	28	1.97
17610479--17610529	26	2.0	26	100	0	102	27	19	27	25	1.99
17611363--17611415	26	2.0	26	92	0	88	24	22	26	26	2.00
17611652--17611681	13	2.3	13	94	0	51	23	6	46	23	1.75
17612268--17612320	26	2.0	26	92	0	88	28	18	26	26	1.98
17605117--17614192	887	10.1	892	84	5	10788	25	24	24	25	2.00
17613158--17613262	26	4.0	26	91	4	176	27	17	25	29	1.97
17613794--17614594	404	2.0	405	87	2	1171	25	27	25	20	1.99
17615410--17615462	26	2.0	26	89	7	81	28	16	24	30	1.97
17616313--17616370	26	2.2	26	96	0	107	24	18	29	27	1.98
17614199--17617600	903	3.8	902	87	3	4703	24	24	25	25	2.00
17617214--17617268	26	2.2	26	93	3	94	27	18	23	30	1.97
17618074--17618187	7	15.7	7	69	11	61	14	4	2	78	1.02
17618073--17618187	16	7.4	14	70	15	59	14	4	2	78	1.02
17618116--17618186	18	4.0	18	71	25	53	15	4	2	77	1.04
17618800--17618922	7	16.7	7	69	15	63	15	5	2	76	1.08
17618800--17618901	51	2.0	52	82	1	125	15	4	2	76	1.08
17618870--17618912	18	2.2	20	76	12	54	13	9	0	76	1.01
17618824--17618922	23	4.4	23	72	6	69	15	6	2	76	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17618856--17618915	19	3.3	18	77	9	59	11	6	3	78	1.06
17618881--17618923	19	2.3	18	80	11	50	11	9	0	79	0.95
17619536--17619631	16	5.9	15	70	15	57	14	5	3	77	1.07
17619596--17619632	15	2.5	14	87	12	56	8	10	0	81	0.89
17617600--17625474	698	11.1	704	91	6	11872	16	11	4	66	1.38
17620907--17620964	7	8.8	6	80	12	53	18	5	1	74	1.10
17620988--17621022	18	2.0	18	88	5	54	14	8	0	77	0.99
17620897--17621023	21	6.0	20	69	15	78	15	7	3	74	1.17
17621626--17621694	7	9.6	7	79	6	66	15	4	2	76	1.06
17621626--17621694	23	3.2	21	71	13	59	15	4	2	76	1.06
17621651--17621720	27	2.6	26	80	8	68	14	5	2	77	1.07
17621702--17621738	16	2.4	16	82	8	51	10	8	0	81	0.89
17622332--17622399	7	9.6	7	73	9	57	16	4	2	76	1.07
17623049--17623143	7	13.4	7	70	12	52	15	5	3	75	1.10
17623761--17623830	7	9.6	7	77	9	68	15	4	2	77	1.05
17624459--17624527	7	9.6	7	73	6	57	14	5	2	76	1.08
17624535--17624574	16	2.6	15	84	7	53	12	10	0	77	0.99
17623964--17625474	727	2.1	731	97	1	2855	16	11	4	67	1.36
17625188--17625256	7	9.6	7	77	12	68	15	4	1	78	0.98
17625240--17625303	16	3.6	18	78	18	62	14	6	3	76	1.10
17625597--17625663	19	3.6	19	83	4	91	8	10	10	70	1.35
17625661--17625730	7	9.6	7	75	9	59	15	5	2	75	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17625811--17625858	19	2.5	19	86	6	62	8	8	2	81	0.96
17626363--17626415	26	2.0	26	92	0	88	30	20	22	26	1.98
17626704--17626865	78	2.1	78	90	4	256	27	19	14	38	1.90
17630855--17630907	26	2.0	26	92	0	88	24	18	28	28	1.98
17631749--17631800	26	2.0	25	96	3	95	26	19	26	26	1.99
17627327--17633634	894	7.1	892	85	5	7810	25	24	25	25	2.00
17633505--17633557	26	2.0	26	89	7	81	28	20	24	26	1.99
17632789--17634324	735	2.1	734	88	1	2277	25	23	24	26	2.00
17634240--17634292	26	2.0	26	96	0	97	26	18	28	26	1.98
17633535--17636383	878	3.2	873	87	2	3969	25	23	25	26	2.00
17637488--17637540	26	2.0	26	88	0	79	30	15	24	30	1.95
17638391--17638443	26	2.0	26	100	0	106	26	16	26	30	1.97
17636413--17641051	905	5.1	902	86	2	6209	25	24	24	25	2.00
17639291--17639343	26	2.0	26	92	0	88	28	18	24	28	1.98
17640189--17640241	26	2.0	26	96	0	97	26	18	26	28	1.98
17640910--17641174	145	1.8	143	87	4	390	24	38	23	14	1.92
17641235--17641287	26	2.0	26	92	0	88	30	18	24	26	1.98
17642139--17642191	26	2.0	26	96	0	97	26	20	24	28	1.99
17641047--17644909	896	4.4	893	83	6	4764	25	24	24	25	2.00
17644777--17644829	26	2.0	26	85	0	70	32	15	22	30	1.94
17647243--17647293	26	2.0	26	92	0	84	27	15	27	29	1.96
17649891--17649943	26	2.0	26	85	0	70	28	22	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17650774--17650826	26	2.0	26	96	0	97	26	18	26	28	1.98
17644868--17654150	882	10.5	875	82	6	9865	25	23	24	25	2.00
17654173--17654225	26	2.0	26	96	0	97	26	22	26	24	2.00
17654149--17659547	903	6.1	891	80	8	5600	25	24	24	25	2.00
17656869--17656921	26	2.0	26	92	0	88	24	18	28	28	1.98
17658599--17658651	26	2.0	26	88	0	79	26	20	22	30	1.98
17661058--17661082	12	2.1	12	100	0	50	8	28	64	0	1.22
17663187--17663537	159	2.2	158	87	4	501	20	29	29	20	1.98
17664403--17664458	27	2.1	28	86	6	80	26	25	19	28	1.99
17665303--17665355	26	2.0	26	100	0	106	26	26	20	26	1.99
17666010--17666405	159	2.5	158	85	2	528	20	28	29	22	1.98
17667223--17667274	26	2.0	25	88	3	77	26	19	23	30	1.98
17669019--17669070	26	2.0	26	100	0	104	30	23	19	26	1.98
17666357--17686325	898	22.0	893	71	13	9896	25	24	24	25	2.00
17670620--17670994	158	2.4	158	83	4	443	21	29	26	22	1.99
17670968--17671020	26	2.0	26	92	0	88	30	26	16	26	1.97
17672625--17672677	26	2.0	26	96	0	97	26	26	18	28	1.98
17673523--17673575	26	2.0	26	89	7	81	30	26	16	26	1.97
17676232--17676284	26	2.0	26	92	0	88	30	26	16	26	1.97
17677510--17677562	26	2.0	26	85	0	70	28	20	20	30	1.98
17677549--17686295	866	10.0	867	81	7	9673	25	24	24	25	2.00
17681007--17681058	26	2.0	25	88	3	77	28	25	19	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17680141--17686325	895	7.0	889	83	6	7361	25	24	24	25	2.00
17682760--17682812	26	2.0	26	92	0	88	28	26	16	28	1.97
17683642--17683694	26	2.0	26	92	0	88	28	24	20	26	1.99
17684532--17684584	26	2.0	26	96	0	97	26	24	20	28	1.99
17685391--17685442	26	2.0	25	92	3	86	28	26	17	26	1.97
17686269--17686321	26	2.0	26	92	0	88	28	24	18	28	1.98
17688016--17688082	16	4.1	16	72	22	59	80	0	1	17	0.79
17688024--17688078	17	3.2	17	78	17	69	81	0	1	16	0.77
17688025--17688089	11	5.9	11	85	5	87	80	0	3	16	0.85
17688025--17688089	16	3.9	16	84	11	71	80	0	3	16	0.85
17689095--17689444	159	2.2	159	91	0	556	20	29	29	20	1.98
17690311--17690364	26	2.0	27	92	3	92	27	25	18	27	1.98
17689254--17690985	897	1.9	892	92	1	2889	25	24	24	25	2.00
17690618--17691353	368	2.0	369	92	0	1233	35	18	17	28	1.94
17692482--17692533	26	2.0	26	100	0	104	30	23	19	26	1.98
17690987--17709814	898	20.7	895	71	13	8864	25	24	24	25	2.00
17694111--17694458	158	2.2	158	84	5	452	23	27	25	22	2.00
17694432--17694484	26	2.0	26	92	0	88	30	26	16	26	1.97
17694681--17697651	894	3.3	893	88	1	4293	26	24	23	25	2.00
17696067--17696119	26	2.0	26	96	0	97	26	26	18	28	1.98
17696964--17697016	26	2.0	26	92	7	90	28	26	16	28	1.97
17699694--17699746	26	2.0	26	92	0	88	30	26	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17700972--17701024	26	2.0	26	85	0	70	28	20	20	30	1.98
17701106--17709784	895	9.9	867	81	8	9300	25	24	24	25	2.00
17704469--17704520	26	2.0	25	88	3	77	28	25	19	26	1.98
17706221--17706273	26	2.0	26	92	0	88	28	26	16	28	1.97
17707110--17707161	25	2.0	26	88	3	79	28	23	21	26	1.99
17707999--17708051	26	2.0	26	96	0	97	26	24	20	28	1.99
17709758--17709810	26	2.0	26	92	0	88	28	24	18	28	1.98
17711435--17711487	26	2.0	26	92	0	88	28	24	18	28	1.98
17714530--17718813	866	4.9	863	83	7	4996	25	24	23	26	2.00
17718015--17718067	26	2.0	26	92	0	88	26	26	18	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117