genome.fa.s101.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  101  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17847356--17847480	7	16.9	7	73	12	74	76	2	4	16	1.05
17847381--17847435	29	1.9	29	85	3	76	78	3	1	16	0.98
17847626--17847661	18	1.9	18	88	5	54	77	8	8	5	1.11
17848124--17848178	29	1.9	29	85	3	76	78	3	1	16	0.98
17848099--17848223	7	16.9	7	73	12	74	76	2	4	16	1.05
17848367--17848402	18	1.9	18	88	5	54	77	8	8	5	1.11
17849038--17849093	26	2.2	26	93	0	94	30	23	17	28	1.97
17849940--17849995	26	2.2	26	93	0	94	30	23	17	28	1.97
17848704--17854041	902	5.9	899	88	3	7535	25	25	24	25	2.00
17852623--17852678	26	2.2	26	93	0	94	30	26	16	26	1.96
17854320--17854372	26	2.0	26	92	0	88	28	24	18	28	1.98
17855206--17855284	26	3.0	26	96	0	140	26	24	20	29	1.99
17857002--17857080	26	3.0	26	81	0	104	27	25	18	27	1.98
17858743--17858795	26	2.0	26	92	0	88	28	28	18	24	1.98
17859631--17859683	26	2.0	26	96	0	97	26	24	20	28	1.99
17861780--17861830	26	2.0	26	88	0	75	23	29	19	27	1.98
17861342--17862136	395	2.0	398	86	5	1129	20	26	27	25	1.99
17862668--17862746	26	3.0	26	96	0	140	27	25	18	27	1.98
17863584--17863636	26	2.0	26	92	0	88	26	26	18	28	1.98
17861748--17879968	903	19.9	890	70	14	8523	25	24	24	25	2.00
17864477--17864529	26	2.0	26	96	0	97	28	26	18	26	1.98
17862754--17868343	893	6.3	863	85	5	6580	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17867086--17867138	26	2.0	26	92	0	88	28	24	18	28	1.98
17866237--17868343	874	2.4	881	86	4	2889	24	24	25	25	2.00
17867980--17868032	26	2.0	26	96	0	97	26	28	20	24	1.99
17869138--17869190	26	2.0	26	96	0	97	28	26	18	26	1.98
17869871--17869923	26	2.0	26	88	0	79	28	22	18	30	1.98
17869065--17870575	729	2.1	731	88	1	2217	26	23	23	26	2.00
17870772--17870846	26	2.9	26	93	0	132	26	26	18	28	1.98
17871697--17871749	26	2.0	26	96	0	97	26	24	20	28	1.99
17873785--17873837	26	2.0	26	96	0	97	28	24	20	26	1.99
17874687--17874739	26	2.0	26	92	0	88	30	26	16	26	1.97
17873657--17879968	902	7.0	902	86	2	8232	25	24	24	25	2.00
17875593--17875645	26	2.0	26	96	0	97	32	26	15	26	1.95
17876486--17876538	26	2.0	26	92	0	88	30	26	16	26	1.97
17878263--17878318	26	2.2	26	87	6	78	33	26	14	25	1.94
17879169--17879221	26	2.0	26	92	0	88	26	26	20	26	1.99
17880747--17880799	26	2.0	26	96	0	97	24	26	22	26	2.00
17881464--17884026	880	2.9	875	87	1	3646	24	24	24	25	2.00
17883971--17890175	891	6.8	891	78	9	5946	26	24	24	25	2.00
17885737--17885815	26	3.0	26	92	0	140	27	27	17	26	1.98
17887557--17887612	28	2.0	27	86	10	78	25	26	21	26	1.99
17888285--17888645	158	2.3	158	80	5	399	21	26	28	22	1.99
17888619--17888671	26	2.0	26	88	0	79	28	22	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17889425--17889476	26	2.0	26	92	0	86	25	26	19	28	1.98
17890992--17892494	714	2.1	713	86	2	2106	26	23	24	25	2.00
17892609--17892661	26	2.0	26	89	7	81	30	24	16	28	1.97
17894130--17896382	719	3.2	707	86	4	3145	26	24	23	25	2.00
17894172--17896382	709	3.1	708	87	3	3123	26	24	23	25	2.00
17896503--17896553	26	2.0	26	96	0	93	27	27	15	29	1.96
17897377--17897429	26	2.0	26	92	0	88	28	24	18	28	1.98
17895635--17898115	878	2.8	883	87	3	3541	26	25	23	25	2.00
17898079--17905058	849	8.1	849	79	10	6628	25	24	23	25	2.00
17905033--17905084	26	2.0	26	96	0	95	26	25	19	28	1.98
17905516--17907309	876	2.0	878	87	2	2588	25	24	23	25	2.00
17906535--17908026	721	2.1	715	88	2	2254	26	24	23	26	2.00
17908156--17908208	26	2.0	26	92	0	88	26	22	20	30	1.98
17908182--17910318	696	3.0	693	83	7	2601	26	24	23	25	2.00
17910448--17910500	26	2.0	26	92	7	90	26	26	18	28	1.98
17912066--17912117	26	2.0	26	96	0	95	26	25	19	28	1.98
17912718--17912768	26	2.0	26	100	0	102	29	27	15	27	1.96
17916063--17916115	26	2.0	26	92	0	88	28	18	24	28	1.98
17916961--17917013	26	2.0	26	89	7	81	26	16	24	32	1.97
17915450--17917893	889	2.7	894	87	3	3382	25	23	24	26	2.00
17917125--17920003	697	4.1	703	84	7	3604	26	22	23	26	2.00
17920878--17920930	26	2.0	26	88	0	79	28	16	24	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17921896--17924060	709	3.1	704	88	2	3194	26	23	24	26	2.00
17924034--17924086	26	2.0	26	85	0	70	26	20	28	24	1.99
17924934--17924986	26	2.0	26	88	0	79	28	16	24	30	1.97
17923312--17927643	898	4.9	874	81	8	4565	25	23	24	26	2.00
17926686--17926764	26	3.0	26	89	7	124	25	20	25	29	1.99
17925812--17927636	926	2.0	925	87	2	2626	24	23	25	26	2.00
17926868--17929057	702	3.1	702	86	4	2923	25	23	24	26	2.00
17929031--17929083	26	2.0	26	92	0	88	28	18	24	28	1.98
17930804--17930856	26	2.0	26	96	0	97	26	18	26	28	1.98
17931706--17931758	26	2.0	26	88	0	79	30	16	24	28	1.97
17928299--17932060	902	4.2	900	86	4	4666	25	24	25	25	2.00
17932928--17932983	26	2.2	26	93	0	94	28	17	23	30	1.97
17934547--17934599	26	2.0	26	88	0	79	28	16	24	30	1.97
17935449--17935501	26	2.0	26	88	0	79	24	22	24	28	2.00
17933803--17936462	902	3.0	897	87	2	3785	25	23	24	25	2.00
17937065--17937117	26	2.0	26	92	0	88	30	20	22	26	1.98
17937938--17937990	26	2.0	26	92	0	88	28	22	24	24	2.00
17938816--17938868	26	2.0	26	88	0	79	26	20	24	28	1.99
17939717--17939769	26	2.0	26	85	7	72	26	20	24	28	1.99
17940602--17940654	26	2.0	26	96	0	97	28	20	24	26	1.99
17936427--17942097	887	6.4	886	85	5	7048	25	23	24	26	2.00
17944072--17944122	26	2.0	26	92	0	84	27	15	25	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17951525--17951577	26	2.0	26	96	0	97	26	18	26	28	1.98
17953306--17953358	26	2.0	26	92	0	88	28	18	24	28	1.98
17949874--17955336	876	6.1	891	84	5	6552	25	24	24	25	2.00
17955099--17955151	26	2.0	26	100	0	106	30	20	22	26	1.98
17956614--17956667	26	2.0	27	92	3	92	25	18	25	29	1.98
17955739--17957499	896	2.0	886	87	2	2524	24	24	25	25	2.00
17957066--17957931	432	2.0	432	90	1	1351	27	24	21	25	1.99
17957931--17957983	26	2.0	26	89	7	81	26	16	28	28	1.97
17957502--17959624	894	2.4	883	88	1	3000	25	23	24	26	2.00
17958933--17962339	839	4.0	841	82	7	3792	25	24	24	25	2.00
17960638--17962548	903	2.1	892	87	2	2709	25	25	24	24	2.00
17962313--17962365	26	2.0	26	92	0	88	30	20	22	26	1.98
17962339--17962688	159	2.2	159	83	4	411	22	28	28	21	1.99
17963368--17963420	26	2.0	26	88	0	79	30	18	22	28	1.98
17965633--17965685	26	2.0	26	96	0	97	26	18	26	28	1.98
17966537--17966589	26	2.0	26	88	0	79	28	18	26	26	1.98
17967435--17967487	26	2.0	26	96	0	97	28	20	24	26	1.99
17968324--17968376	26	2.0	26	88	0	79	30	20	20	28	1.98
17970090--17970141	26	2.0	26	96	3	97	26	21	26	25	1.99
17970985--17971037	26	2.0	26	92	0	88	28	20	24	26	1.99
17964915--17971955	898	7.9	900	87	3	9510	25	24	24	25	2.00
17971885--17971937	26	2.0	26	92	0	88	24	22	26	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17973062--17973114	26	2.0	26	82	7	63	26	22	22	28	1.99
17972193--17976229	893	4.5	893	86	3	5381	24	23	25	26	2.00
17975459--17975542	42	2.0	42	100	0	168	28	14	26	30	1.95
17975725--17975777	26	2.0	26	88	0	79	26	18	26	28	1.98
17975996--17976471	243	2.0	244	89	2	742	25	17	21	36	1.94
17978560--17978612	26	2.0	26	96	0	97	26	18	26	28	1.98
17977779--17979331	777	2.0	786	87	4	2238	25	23	24	26	2.00
17979426--17979478	26	2.0	26	92	0	88	28	18	24	28	1.98
17979918--17980462	283	1.9	283	94	0	957	30	22	21	25	1.98
17980608--17980660	26	2.0	26	96	0	97	26	18	26	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117