genome.fa.s101.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  114  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19629119--19629171	26	2.0	26	96	0	97	26	26	22	24	2.00
19629291--19629449	76	2.0	80	88	7	238	13	17	42	25	1.86
19630101--19630153	26	2.0	26	100	0	106	26	26	20	26	1.99
19630991--19631043	26	2.0	26	96	0	97	26	24	20	28	1.99
19629369--19631776	891	2.7	885	88	2	3421	26	25	22	25	2.00
19632467--19632519	26	2.0	26	92	0	88	30	24	18	26	1.98
19633341--19633393	26	2.0	26	88	0	79	26	24	18	30	1.98
19632050--19640837	896	9.7	891	76	10	7256	26	24	23	25	2.00
19634958--19635326	159	2.3	159	80	1	382	20	26	27	24	1.99
19635300--19635352	26	2.0	26	96	0	97	28	26	18	26	1.98
19636178--19636230	26	2.0	26	96	0	97	26	24	20	28	1.99
19637946--19637993	25	1.9	25	95	0	87	25	31	20	22	1.98
19638837--19638889	26	2.0	26	92	0	88	30	24	18	26	1.98
19635117--19640837	876	6.5	877	81	7	6068	25	24	24	25	2.00
19642087--19642139	26	2.0	26	88	0	79	33	24	15	26	1.95
19640835--19644680	904	4.3	902	84	5	4672	25	24	23	25	2.00
19642989--19643041	26	2.0	26	85	0	70	28	24	16	30	1.97
19648246--19648296	26	2.0	26	96	0	93	29	23	19	27	1.98
19649140--19649192	26	2.0	26	88	0	79	26	24	20	28	1.99
19650031--19650083	26	2.0	26	96	0	97	28	26	18	26	1.98
19652887--19652939	26	2.0	26	88	0	79	28	22	18	30	1.98
19652692--19653269	288	2.0	288	83	3	716	20	29	28	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19653175--19653227	26	2.0	26	88	0	79	28	26	16	28	1.97
19654078--19654128	26	2.0	26	96	0	93	29	29	13	27	1.94
19652982--19657772	903	5.3	892	83	6	5730	25	24	24	25	2.00
19654972--19655043	26	2.8	26	86	0	108	33	23	15	27	1.95
19656800--19656859	26	2.3	26	94	0	102	30	20	20	30	1.97
19656800--19656870	26	2.7	25	86	4	97	29	22	19	28	1.98
19658803--19659862	529	2.0	528	89	1	1633	29	21	21	27	1.98
19659343--19662094	714	3.8	714	89	2	4022	27	23	22	26	2.00
19663095--19663147	26	2.0	26	96	0	97	28	26	18	26	1.98
19662219--19664765	902	2.8	896	87	3	3571	25	24	23	25	2.00
19663997--19664048	26	2.0	25	96	3	95	26	23	21	28	1.99
19664023--19666220	712	3.1	712	88	3	3123	26	23	23	25	2.00
19666323--19666375	26	2.0	26	88	0	79	28	22	18	30	1.98
19667935--19667987	26	2.0	26	92	0	88	30	22	16	30	1.96
19668834--19668886	26	2.0	26	96	0	97	26	24	20	28	1.99
19668886--19685244	892	17.8	896	71	12	9009	25	24	24	25	2.00
19671406--19671458	26	2.0	26	92	0	88	24	24	22	28	2.00
19668894--19675901	897	7.8	892	84	4	7860	25	24	24	25	2.00
19677047--19677099	26	2.0	26	88	0	79	28	22	20	28	1.99
19677932--19677984	26	2.0	26	92	0	88	26	22	20	30	1.98
19678819--19678869	26	2.0	26	84	0	66	31	27	11	29	1.92
19679720--19679772	26	2.0	26	88	0	79	30	20	18	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19676118--19685244	885	10.0	890	76	9	7421	25	24	23	25	2.00
19680604--19680682	26	3.0	26	98	0	149	27	26	18	26	1.98
19681345--19681719	159	2.4	159	87	0	509	20	29	28	22	1.98
19684386--19684438	26	2.0	26	92	0	88	30	24	18	26	1.98
19686885--19686937	26	2.0	26	92	0	88	30	22	20	26	1.98
19685282--19688558	887	3.7	856	83	6	3681	26	24	23	25	2.00
19687779--19687830	26	2.0	26	88	3	79	23	26	21	28	1.99
19689349--19689401	26	2.0	26	88	0	79	30	22	20	26	1.98
19690994--19691046	26	2.0	26	96	0	97	28	26	18	26	1.98
19691894--19691967	26	2.8	26	91	0	121	28	25	16	29	1.97
19692452--19692504	26	2.0	26	96	0	97	28	26	18	26	1.98
19692688--19692717	12	2.6	12	94	5	53	13	26	20	40	1.89
19693368--19693419	26	2.0	26	96	0	95	32	23	17	26	1.96
19693209--19693577	184	2.0	185	85	2	492	23	25	27	23	2.00
19694436--19694485	26	1.9	26	100	0	100	26	26	20	28	1.99
19695309--19695361	26	2.0	26	100	0	106	26	26	20	26	1.99
19695959--19696011	26	2.0	26	92	0	88	30	24	18	26	1.98
19699938--19699988	26	2.0	26	96	0	93	31	27	13	27	1.94
19700841--19700893	26	2.0	26	92	0	88	24	24	20	30	1.99
19701740--19701813	26	2.8	26	93	0	130	28	27	16	28	1.97
19702298--19702350	26	2.0	26	96	0	97	28	26	18	26	1.98
19703044--19703439	184	2.1	185	84	2	501	22	26	27	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19703385--19703437	26	2.0	26	96	0	97	26	28	20	24	1.99
19704297--19704346	26	1.9	26	100	0	100	26	26	20	28	1.99
19705802--19705855	26	2.0	27	92	3	92	33	24	16	25	1.96
19709787--19709837	26	2.0	26	96	0	93	31	27	13	27	1.94
19710682--19710734	26	2.0	26	92	0	88	24	24	20	30	1.99
19711571--19711645	26	2.9	26	93	0	132	29	26	16	28	1.96
19712119--19712171	26	2.0	26	96	0	97	28	26	18	26	1.98
19714069--19714118	26	1.9	26	100	0	100	26	26	20	28	1.99
19715565--19715617	26	2.0	26	96	0	97	32	24	16	26	1.97
19717188--19717240	26	2.0	26	92	0	88	28	24	18	28	1.98
19717217--19717737	284	1.8	286	83	5	707	16	26	30	25	1.97
19718376--19718425	26	1.9	26	100	0	100	24	24	22	30	1.99
19719261--19719313	26	2.0	26	96	0	97	28	26	18	26	1.98
19717503--19722749	888	5.8	886	82	6	5833	26	24	23	25	2.00
19720131--19720183	26	2.0	26	96	0	97	26	24	22	26	2.00
19721030--19721082	26	2.0	26	88	0	79	30	22	18	28	1.98
19721948--19722000	26	2.0	26	85	7	72	30	24	18	26	1.98
19722819--19722871	26	2.0	26	92	0	88	28	24	18	28	1.98
19726026--19726079	26	2.1	26	100	0	108	25	27	20	25	1.99
19726930--19726982	26	2.0	26	96	0	97	28	26	18	26	1.98
19725165--19733908	904	9.8	899	85	4	10462	26	24	23	25	2.00
19727632--19727656	12	2.1	12	100	0	50	0	56	28	16	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19727834--19727886	26	2.0	26	92	7	90	26	24	22	26	2.00
19728694--19728750	26	2.1	27	83	6	80	22	24	24	28	2.00
19728701--19728753	26	2.0	26	92	0	88	26	24	24	24	2.00
19729608--19729660	26	2.0	26	85	7	72	30	24	18	26	1.98
19728612--19733908	885	6.0	883	87	4	6611	25	24	23	25	2.00
19730492--19730544	26	2.0	26	82	13	65	32	22	18	26	1.97
19733145--19733197	26	2.0	26	96	0	97	28	26	18	26	1.98
19730639--19733907	893	3.7	893	87	2	4526	26	24	23	26	2.00
19733171--19735336	718	3.0	710	87	4	3065	26	24	22	26	2.00
19735471--19735518	25	1.9	25	91	0	78	27	27	18	27	1.98
19738863--19742939	868	4.7	869	86	4	5389	26	24	23	25	2.00
19742321--19744377	726	2.9	715	87	3	2922	27	24	22	25	2.00
19744480--19744558	26	3.0	26	90	0	131	27	22	21	27	1.99
19745409--19745461	26	2.0	26	92	0	88	26	26	18	28	1.98
19743608--19747076	896	3.8	896	86	3	4611	26	24	23	25	2.00
19746332--19749961	708	5.1	706	85	4	4715	26	24	22	26	2.00
19748595--19748630	17	2.1	17	100	0	72	11	27	38	22	1.88
19750081--19750133	26	2.0	26	96	0	97	26	24	20	28	1.99
19750986--19751038	26	2.0	26	92	0	88	30	22	20	26	1.98
19749194--19754332	905	5.7	897	85	3	6487	26	24	23	25	2.00
19751891--19751943	26	2.0	26	96	0	97	26	24	20	28	1.99
19754298--19754369	35	2.1	35	100	0	144	12	41	22	23	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19755355--19755405	26	2.0	26	96	0	93	29	27	15	27	1.96
19756212--19756264	26	2.0	26	89	7	81	28	22	18	30	1.98
19754697--19756668	858	2.2	882	84	6	2522	26	25	22	25	2.00
19758981--19759033	26	2.0	26	92	0	88	30	20	22	26	1.98
19759886--19759938	26	2.0	26	92	0	88	26	18	26	28	1.98
19760787--19760839	26	2.0	26	92	0	88	30	20	24	24	1.99
19758111--19761714	904	4.0	901	85	3	4765	25	23	25	26	2.00
19760970--19762431	717	2.0	716	87	1	2128	26	21	23	28	1.99
19762405--19762456	26	2.0	25	92	3	86	26	17	25	30	1.97
19762568--19764315	718	2.5	708	87	2	2500	25	22	24	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117