genome.fa.s101.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  25  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3192218--3192259	20	2.2	19	87	8	59	35	0	0	64	0.94
3192284--3192328	21	2.1	21	84	8	56	62	2	0	35	1.08
3192189--3192463	134	2.0	134	94	3	473	54	2	0	42	1.15
3192411--3192463	21	2.5	22	81	12	65	58	1	0	39	1.09
3192428--3192463	12	3.3	11	88	11	56	66	0	0	33	0.92
3204811--3204873	33	1.9	33	90	0	99	36	19	19	25	1.94
3205693--3205740	18	2.7	18	77	6	53	12	6	6	75	1.19
3206063--3206104	19	2.2	20	82	4	50	11	7	2	78	1.04
3211977--3212018	18	2.3	18	84	8	50	33	0	0	66	0.92
3212480--3212509	10	2.9	10	95	5	51	40	0	0	60	0.97
3214743--3214775	7	4.7	7	100	0	66	15	39	15	30	1.88
3217173--3217237	20	3.2	21	78	18	66	27	0	1	70	0.96
3234225--3234297	37	2.0	35	82	10	85	50	2	1	45	1.24
3237820--3237946	48	2.6	48	78	2	130	22	28	16	33	1.95
3237964--3238288	162	2.0	159	90	1	515	21	27	19	32	1.97
3246317--3246348	2	16.0	2	93	0	55	46	0	0	53	1.00
3249177--3249220	23	2.0	23	90	4	72	15	15	9	59	1.61
3249289--3249351	25	2.5	24	87	5	81	26	28	11	33	1.91
3253056--3253099	22	2.0	22	95	0	79	31	11	13	43	1.80
3262624--3262663	19	2.2	18	90	4	62	27	0	2	70	1.01
3263128--3263226	48	2.1	46	90	3	162	24	8	9	58	1.56
3263149--3263225	23	3.3	23	67	10	66	20	9	7	62	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3266643--3266684	20	2.2	20	91	4	68	80	2	7	9	0.97
3266645--3266684	10	4.3	9	85	14	55	80	2	7	10	1.00
3267374--3267419	12	3.9	12	78	13	51	17	0	8	73	1.07
3269223--3269271	26	2.0	23	84	11	62	51	0	16	32	1.45
3270562--3270610	23	2.1	23	85	7	64	20	0	6	73	1.04
3273080--3273123	20	2.2	20	88	4	63	29	0	2	68	1.02
3273090--3273136	20	2.3	20	85	3	58	29	0	6	63	1.19
3278230--3278259	13	2.3	13	94	0	51	66	0	0	33	0.92
3278477--3278521	22	2.0	22	82	0	54	62	0	4	33	1.15
3289728--3289761	13	2.6	13	90	9	52	76	0	11	11	1.02
3290569--3290931	49	7.6	48	79	12	374	28	11	20	39	1.87
3290569--3290946	100	4.0	97	80	10	406	28	10	20	39	1.86
3290569--3290946	193	2.0	191	82	8	473	28	10	20	39	1.86
3291250--3291278	14	2.1	14	100	0	58	86	0	0	13	0.58
3291250--3291281	8	4.2	8	84	15	50	84	0	0	15	0.63
3291882--3291911	13	2.3	13	94	0	51	66	0	0	33	0.92
3291879--3291928	12	4.2	12	80	17	52	58	0	0	42	0.98
3291940--3291983	21	2.1	21	83	8	54	75	2	2	20	1.03
3293266--3293342	34	2.2	35	82	11	88	44	15	3	36	1.65
3294068--3294099	16	1.9	17	93	6	57	31	3	0	65	1.08
3294196--3294243	19	2.5	20	82	6	62	35	0	6	58	1.23
3294555--3294612	17	3.4	17	76	9	64	44	8	5	41	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3299696--3300618	460	2.0	460	98	0	1774	31	19	20	28	1.97
3310775--3310810	17	2.1	17	89	0	54	44	0	0	55	0.99
3318744--3318823	21	4.1	19	72	23	60	46	2	2	48	1.29
3318762--3318799	17	2.2	17	100	0	76	50	0	0	50	1.00
3318954--3319031	36	2.1	37	81	6	88	53	1	0	44	1.08
3324599--3324624	12	2.2	12	100	0	52	69	0	0	30	0.89
3327300--3327370	31	2.3	31	82	4	81	28	5	0	66	1.14
3327331--3327388	15	3.8	15	74	19	57	27	1	1	68	1.08
3328370--3328456	29	3.0	29	83	5	97	50	1	1	47	1.16
3328379--3328470	29	3.1	29	81	4	96	51	2	1	45	1.20
3329785--3329820	18	2.0	18	94	0	63	69	0	0	30	0.89
3329788--3329857	23	3.2	22	80	9	72	60	0	2	37	1.12
3332778--3332815	16	2.3	17	86	4	51	44	0	0	55	0.99
3333394--3333423	2	15.0	2	92	0	51	53	0	0	46	1.00
3333910--3333939	2	15.5	2	93	6	53	50	0	0	50	1.00
3338038--3338145	30	3.6	30	78	0	108	37	5	19	37	1.75
3341575--3341602	3	9.3	3	100	0	56	67	0	0	32	0.91
3361684--3361727	20	2.2	20	84	15	56	50	0	2	47	1.13
3361873--3361941	20	3.4	21	73	16	56	31	0	0	68	0.90
3361897--3361960	15	4.0	16	82	12	78	34	0	0	65	0.93
3361873--3361957	30	2.6	32	81	10	102	34	0	0	65	0.93
3361873--3361942	19	3.8	18	72	14	63	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3362184--3362208	12	2.1	12	100	0	50	48	0	0	52	1.00
3362208--3362238	4	7.8	4	100	0	62	25	0	22	51	1.48
3365457--3365507	27	1.9	27	92	4	86	37	0	0	62	0.95
3365465--3365514	11	4.6	11	77	2	57	34	0	0	66	0.92
3369957--3370007	14	3.6	14	81	5	66	47	0	1	50	1.12
3372975--3373011	16	2.2	17	90	4	58	29	0	5	64	1.15
3373191--3373236	15	2.9	17	81	15	55	47	0	0	52	1.00
3373380--3373417	15	2.6	15	88	12	53	10	0	2	86	0.66
3373853--3373887	18	2.1	17	89	10	54	37	0	0	62	0.95
3374157--3374202	20	2.3	20	88	0	65	36	0	2	60	1.09
3380491--3380532	21	2.0	21	85	0	57	0	7	19	73	1.05
3380529--3380556	1	28.0	1	100	0	56	0	0	100	0	0.00
3385056--3385113	15	3.9	15	73	8	57	39	3	1	55	1.27
3385595--3385957	162	2.2	160	89	4	534	25	27	15	31	1.95
3386930--3386978	23	2.1	23	88	0	71	55	22	12	10	1.66
3388337--3388402	11	5.6	11	71	13	51	46	4	4	43	1.44
3388564--3388606	8	5.1	8	86	8	59	46	0	4	48	1.22
3388564--3388606	17	2.5	17	88	7	61	46	0	4	48	1.22
3392313--3392339	2	13.5	2	100	0	54	0	0	48	51	1.00
3393824--3393857	2	17.0	2	100	0	68	50	0	0	50	1.00
3397809--3397870	32	1.9	32	81	12	74	58	1	1	38	1.18
3400066--3400114	25	1.9	26	87	4	73	32	6	18	42	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3401802--3401985	97	1.9	97	88	2	280	38	9	8	43	1.68
3402905--3402931	13	2.1	13	100	0	54	29	0	7	62	1.22
3406352--3406380	3	9.7	3	100	0	58	31	0	0	68	0.89
3406941--3407002	21	3.1	20	81	11	58	72	4	1	20	1.12
3406940--3407005	19	3.4	18	79	12	60	71	4	1	22	1.13
3416729--3416799	13	5.1	14	69	19	51	59	1	0	39	1.06
3416755--3416827	13	5.6	13	70	14	53	61	0	0	38	0.96
3416755--3416840	17	5.1	17	67	24	56	61	0	0	38	0.96
3416758--3416839	38	2.2	37	82	8	94	59	0	0	40	0.97
3416746--3416819	25	2.9	24	74	9	67	59	0	0	40	0.97
3422362--3422418	4	13.0	4	78	14	51	64	0	0	35	0.93
3422362--3422454	23	3.9	23	87	8	125	60	0	0	39	0.97
3422365--3422441	27	2.6	31	80	15	101	62	0	0	37	0.96
3422395--3422452	8	7.5	8	77	14	68	56	0	0	43	0.99
3422365--3422453	28	3.0	30	72	18	71	60	0	0	39	0.97
3422366--3422539	80	2.2	80	77	9	180	58	1	2	38	1.18
3422395--3422471	23	3.4	22	84	10	66	55	0	1	42	1.07
3422551--3422622	19	3.8	19	78	10	69	48	1	0	50	1.09
3422614--3422685	9	8.6	9	73	14	55	51	2	0	45	1.15
3422529--3422650	15	7.3	16	72	20	63	49	1	0	48	1.16
3422619--3422684	25	2.7	25	86	9	100	51	3	0	45	1.16
3422657--3422696	20	2.0	20	85	5	53	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3422602--3422686	16	5.5	15	74	16	59	51	2	0	45	1.13
3424873--3424927	28	2.0	28	96	0	101	38	9	9	43	1.68
3434180--3434250	5	13.4	5	74	11	61	38	5	4	52	1.45
3434222--3434282	10	5.6	10	73	17	50	37	6	3	52	1.44
3438238--3438292	20	2.8	20	68	10	51	61	0	0	38	0.96
3438331--3438364	17	2.0	17	100	0	68	41	23	5	29	1.78
3440266--3440299	17	2.0	17	88	0	50	44	8	0	47	1.34
3440859--3440917	29	2.0	29	90	0	91	38	5	13	42	1.66
3444998--3445049	23	2.2	24	79	3	61	61	0	3	34	1.14
3445585--3445617	2	16.5	2	100	0	66	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117