genome.fa.s101.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  14  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1439630--1439669	5	8.0	5	83	10	55	0	35	42	22	1.54
1439629--1439679	15	3.4	15	80	0	57	1	29	47	21	1.62
1439881--1439924	19	2.3	19	88	0	61	22	20	29	27	1.99
1439920--1439945	11	2.4	11	100	0	52	26	19	38	15	1.91
1439986--1440058	31	2.4	31	88	4	103	28	24	24	21	1.99
1440474--1440575	40	2.5	41	78	13	113	63	5	0	30	1.18
1440758--1440871	1	114.0	1	77	0	93	7	0	6	86	0.69
1440757--1440867	14	7.9	14	82	11	106	8	0	6	85	0.74
1440775--1440860	40	2.2	40	89	0	127	5	0	6	87	0.68
1440787--1440872	40	2.2	39	91	4	136	3	0	8	88	0.62
1440878--1441943	41	26.0	41	89	6	1494	38	21	16	22	1.93
1440878--1441943	83	13.0	81	92	5	1566	38	21	16	22	1.93
1443132--1443170	8	4.9	8	93	0	69	10	15	0	74	1.07
1443127--1443214	35	2.5	35	78	12	92	9	18	0	72	1.10
1443596--1443622	1	27.0	1	100	0	54	0	0	0	100	0.00
1446829--1447293	156	2.9	156	91	3	759	37	17	15	29	1.90
1446829--1447307	161	3.0	161	92	2	774	39	17	14	28	1.89
1447322--1447361	14	3.0	14	92	7	66	90	5	0	5	0.57
1447324--1447361	1	38.0	1	91	0	58	94	2	0	2	0.35
1447369--1447418	15	3.2	16	83	11	59	2	34	44	20	1.63
1447381--1447418	5	7.6	5	82	11	51	0	34	44	21	1.52
1447638--1447682	19	2.4	19	88	0	63	26	22	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1447733--1447805	31	2.4	31	88	4	103	28	24	24	21	1.99
1448794--1448852	27	2.2	27	93	3	102	38	1	3	55	1.26
1448796--1448860	27	2.7	23	80	19	62	36	1	3	58	1.23
1448860--1448895	15	2.4	16	86	13	58	58	0	0	41	0.98
1450601--1450636	15	2.4	16	86	13	58	58	0	0	41	0.98
1454074--1454112	13	2.9	13	88	3	60	28	0	2	69	1.02
1454074--1454115	14	3.1	14	82	6	59	30	0	2	66	1.04
1455701--1455730	13	2.3	13	94	0	51	40	10	0	50	1.36
1456969--1457007	20	1.9	21	89	5	62	41	0	7	51	1.31
1458416--1458449	11	3.1	11	86	0	50	41	5	2	50	1.42
1459580--1459621	14	2.9	14	82	10	50	59	4	16	19	1.54
1461478--1461526	21	2.3	21	82	10	55	38	0	2	59	1.09
1465459--1465503	22	2.0	22	87	8	65	48	0	2	48	1.13
1465911--1465959	21	2.3	21	82	10	55	38	0	2	59	1.09
1467021--1467106	37	2.4	34	85	10	127	32	4	6	55	1.47
1467031--1467106	37	2.1	37	100	0	152	34	5	7	52	1.53
1467802--1467834	17	1.9	17	93	0	57	27	12	0	60	1.32
1469846--1469893	20	2.5	18	71	15	51	43	2	2	52	1.24
1469875--1469978	23	4.7	20	76	21	93	36	0	0	62	1.02
1469890--1469983	45	2.1	45	86	11	131	36	1	0	62	1.02
1469890--1469983	23	4.2	23	88	9	133	36	1	0	62	1.02
1470079--1470175	40	2.4	39	77	11	99	47	6	10	36	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1471470--1471528	28	2.2	25	82	8	64	33	22	10	33	1.87
1472401--1472426	8	3.2	8	100	0	52	38	0	0	61	0.96
1476355--1476513	34	4.7	34	83	0	192	35	13	16	33	1.88
1476458--1476627	34	5.0	34	70	4	110	32	11	16	38	1.85
1484498--1484941	187	2.4	187	84	5	567	35	12	10	41	1.78
1485730--1485770	12	3.3	13	80	10	50	21	7	29	41	1.80
1487437--1487481	21	2.1	21	84	8	56	31	2	4	62	1.27
1488764--1488856	27	3.1	28	63	22	64	36	16	6	40	1.74
1488705--1489048	61	5.8	57	82	11	415	34	14	7	43	1.73
1488705--1489058	121	3.0	117	86	7	491	34	13	7	44	1.72
1489064--1489198	17	7.6	17	71	19	73	72	2	4	20	1.15
1489418--1489455	20	1.9	19	85	15	51	0	36	2	60	1.11
1489672--1489727	26	2.2	25	81	12	69	41	17	5	35	1.73
1490003--1490045	19	2.4	17	80	7	50	69	2	4	23	1.18
1490455--1490588	1	134.0	1	71	0	88	0	1	12	85	0.72
1490448--1490588	19	7.8	18	86	11	182	0	1	13	84	0.73
1490448--1490587	8	16.8	8	80	15	142	0	1	13	84	0.74
1490448--1490588	10	15.2	10	81	9	133	0	1	13	84	0.73
1490448--1490588	9	15.3	9	83	13	173	0	1	13	84	0.73
1490659--1490691	16	2.1	16	100	0	66	39	12	24	24	1.89
1490615--1490733	57	2.0	60	91	4	199	36	20	19	23	1.95
1490677--1490775	42	2.4	41	88	6	146	38	18	18	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1492024--1492083	8	7.2	8	71	14	50	3	16	0	80	0.85
1492026--1492100	15	4.6	15	80	14	78	4	16	0	80	0.87
1496001--1496356	61	5.9	59	89	5	513	34	13	8	44	1.74
1496362--1496516	17	8.8	16	71	17	71	73	3	3	19	1.13
1496385--1496507	4	30.8	4	71	22	57	72	4	3	20	1.15
1496377--1496523	13	10.8	13	72	15	93	75	3	2	18	1.06
1496464--1496517	21	2.5	22	93	3	92	79	3	0	16	0.87
1497369--1497422	20	2.5	20	80	17	56	70	1	7	20	1.21
1497380--1497468	34	2.6	35	74	13	96	68	2	5	23	1.22
1497438--1497525	46	1.9	45	82	13	108	68	2	4	25	1.20
1498454--1498522	35	2.0	35	85	5	95	37	14	10	37	1.80
1501490--1501568	38	2.1	38	83	6	99	39	12	6	41	1.69
1508284--1508323	13	3.1	13	77	0	53	20	15	10	55	1.68
1515199--1515338	16	8.8	16	70	22	66	30	1	3	64	1.19
1515740--1515793	25	2.2	25	86	6	74	38	1	16	42	1.59
1516446--1516669	62	3.8	58	87	6	319	45	8	12	34	1.72
1516440--1516669	120	1.9	116	92	3	388	45	8	12	33	1.71
1520527--1520574	21	2.3	21	82	10	62	81	0	14	4	0.84
1521808--1522486	41	16.5	40	86	9	933	22	17	21	38	1.93
1521808--1522486	124	5.5	120	87	8	933	22	17	21	38	1.93
1521808--1522564	165	4.5	162	86	8	1008	21	17	22	38	1.94
1522485--1522510	13	2.0	13	100	0	52	0	30	38	30	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1522444--1522551	54	2.0	54	90	0	171	18	20	25	35	1.95
1522791--1522935	16	8.8	16	69	25	65	31	1	3	64	1.19
1522788--1522935	6	23.2	6	70	22	51	31	1	3	64	1.18
1522802--1522934	6	18.9	7	72	20	57	32	1	3	63	1.19
1523050--1523087	20	2.0	20	84	5	51	18	2	2	76	1.02
1523340--1523394	25	2.2	25	80	6	67	40	3	16	40	1.66
1523910--1524050	11	12.3	11	66	24	51	18	3	4	73	1.17
1523910--1523961	17	3.2	16	79	17	54	17	0	5	76	0.97
1524061--1524178	58	2.0	60	88	5	177	48	8	9	33	1.66
1526473--1527218	144	5.2	142	89	2	1053	34	15	23	26	1.94
1528095--1528168	31	2.4	31	95	2	130	59	9	4	27	1.47
1528840--1528891	23	2.6	18	69	25	50	30	17	9	42	1.81
1530131--1530165	18	1.9	18	88	0	52	62	0	0	37	0.95
1530821--1530857	19	1.9	19	88	0	56	54	5	0	40	1.24
1532810--1532841	16	1.9	17	93	6	57	59	6	6	28	1.46
1533015--1533165	75	2.0	75	96	0	275	45	8	7	38	1.63
1533257--1533291	18	1.9	18	88	0	52	57	0	0	42	0.99
1534132--1534174	17	2.5	17	80	0	59	51	0	0	48	1.00
1536362--1536524	61	2.7	59	86	5	240	36	11	7	44	1.69
1537503--1537669	14	11.6	13	70	19	68	61	0	4	33	1.22
1537516--1537708	21	9.0	21	76	13	126	59	0	5	34	1.24
1537516--1537686	74	2.2	78	86	6	235	60	0	5	33	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1537510--1537741	130	1.8	127	83	8	308	60	1	5	32	1.27
1537720--1537749	13	2.2	14	94	5	53	83	0	0	16	0.65
1537897--1537931	18	1.9	18	100	0	70	0	8	5	85	0.73
1537951--1538168	42	5.2	41	81	7	217	35	21	16	26	1.94
1537951--1538234	83	3.4	83	83	7	283	36	21	15	26	1.93
1538027--1538244	41	5.4	40	80	11	221	36	20	15	27	1.93
1544247--1544292	20	2.3	19	92	7	74	17	4	52	26	1.63
1545601--1545631	15	2.1	15	93	0	53	51	6	22	19	1.69
1548836--1549053	61	3.7	56	83	10	249	37	13	6	42	1.72
1549086--1549118	5	6.4	5	93	6	57	81	0	0	18	0.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117