genome.fa.s101.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  69  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12753835--12753889	27	2.0	27	96	0	101	21	5	23	49	1.70
12755225--12756394	321	3.7	314	77	10	898	42	14	9	32	1.79
12755351--12756434	160	6.8	159	78	7	882	42	15	9	32	1.79
12756823--12756859	19	1.9	19	88	0	56	40	13	0	45	1.43
12756836--12756878	22	2.0	22	95	0	77	39	11	0	48	1.40
12756823--12756950	41	3.4	38	81	10	104	36	6	3	53	1.45
12756866--12756999	3	48.0	3	69	24	71	33	2	5	58	1.35
12756848--12757002	5	29.6	5	72	19	79	34	3	5	56	1.40
12756866--12757002	18	7.7	18	73	16	92	33	2	5	58	1.34
12756904--12757017	18	6.5	17	74	19	85	32	1	5	60	1.29
12756893--12756999	3	38.0	3	70	22	72	33	2	4	58	1.33
12760862--12760890	11	2.7	11	94	5	51	6	10	0	82	0.83
12763312--12763342	14	2.2	14	100	0	62	35	6	12	45	1.68
12768810--12768946	60	2.3	60	84	2	168	23	28	16	31	1.96
12769236--12769279	19	2.3	19	84	0	52	31	11	6	50	1.65
12769262--12769367	5	20.6	5	72	22	78	35	1	6	55	1.37
12769265--12769431	3	59.7	3	64	23	53	34	2	7	56	1.40
12769268--12769364	13	7.5	13	71	15	60	36	2	7	54	1.40
12769268--12769414	18	7.9	18	68	20	81	34	2	7	55	1.43
12769397--12769436	21	1.9	21	84	0	53	32	0	5	62	1.17
12769853--12769912	19	2.8	21	74	23	54	30	13	20	36	1.90
12777213--12777330	62	1.9	63	82	8	152	34	13	12	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12777238--12777574	63	5.4	62	75	8	166	32	15	10	40	1.83
12777234--12777633	126	3.2	125	72	10	350	34	14	10	40	1.81
12777237--12777449	63	3.4	63	80	4	225	32	15	11	40	1.83
12777327--12777511	63	2.9	63	82	4	203	30	16	10	41	1.83
12777872--12778112	61	3.9	59	75	8	205	41	8	12	37	1.75
12778032--12778222	96	2.0	97	85	3	260	39	10	14	35	1.81
12780176--12780232	21	2.7	21	76	17	64	45	21	15	17	1.85
12781270--12781313	14	3.2	14	96	3	81	45	25	0	29	1.54
12781631--12781673	20	2.1	21	95	4	79	41	0	32	25	1.56
12784486--12784703	111	2.0	111	94	0	382	39	25	12	22	1.89
12785367--12785397	14	2.2	14	94	0	53	16	0	16	67	1.23
12787138--12787185	3	16.0	3	100	0	96	33	0	0	66	0.92
12787205--12787282	25	3.3	25	72	20	69	25	3	3	66	1.26
12787274--12787311	19	2.1	18	90	5	58	21	0	0	78	0.74
12787202--12787307	11	9.6	11	68	12	58	24	2	2	69	1.15
12789957--12789989	2	16.5	2	93	0	57	48	0	0	51	1.00
12791898--12791946	3	16.3	3	100	0	98	32	0	0	67	0.91
12793342--12793367	1	26.0	1	100	0	52	100	0	0	0	0.00
12794774--12794909	65	2.1	66	91	2	220	39	7	13	39	1.72
12794763--12794924	33	4.8	35	82	8	187	41	7	13	37	1.73
12795038--12795101	32	2.0	32	100	0	128	34	25	6	34	1.81
12795364--12795413	25	2.0	25	92	0	82	44	6	0	50	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12795533--12795600	29	2.4	30	76	13	74	50	1	1	47	1.19
12799063--12799105	21	2.1	20	87	12	61	51	0	16	32	1.45
12801872--12801906	16	2.2	16	94	0	61	31	14	11	42	1.81
12802519--12802595	38	2.0	38	92	0	127	28	9	31	31	1.88
12805035--12805445	145	2.8	146	81	2	436	31	16	12	39	1.85
12805774--12805807	1	34.0	1	93	0	59	97	2	0	0	0.19
12811656--12812235	278	2.1	280	79	3	596	36	17	14	32	1.89
12812399--12813183	295	2.7	293	80	5	873	37	14	13	34	1.86
12820645--12820680	15	2.4	15	95	0	63	16	8	11	63	1.49
12820952--12821094	55	2.6	55	80	2	171	48	12	9	28	1.73
12821711--12821767	18	3.1	18	76	2	60	52	0	26	21	1.47
12822191--12822249	21	2.8	20	84	7	73	30	28	10	30	1.90
12823416--12823976	158	3.6	155	76	4	495	34	7	19	38	1.80
12823420--12823944	157	3.3	157	77	4	409	34	7	19	38	1.80
12832848--12832880	11	2.9	11	95	4	57	0	12	0	87	0.53
12832848--12832885	18	2.1	19	90	5	60	0	15	0	84	0.63
12833951--12833988	16	2.2	18	86	9	53	44	2	0	52	1.14
12835703--12835728	1	26.0	1	100	0	52	0	0	0	100	0.00
12836507--12836550	17	2.6	16	82	7	52	18	6	2	72	1.17
12840254--12840307	2	27.0	2	86	0	72	51	1	1	44	1.22
12844445--12844502	12	4.8	12	77	8	55	27	0	3	68	1.05
12848110--12848156	12	3.9	12	85	0	67	53	10	17	19	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12855432--12855474	12	3.6	12	90	0	68	55	9	16	18	1.67
12864769--12864884	43	2.7	43	81	5	153	41	12	12	33	1.81
12864769--12864972	43	4.8	42	74	8	142	41	13	11	33	1.81
12864769--12864974	86	2.4	86	83	6	240	40	14	11	33	1.82
12864944--12865006	32	2.0	32	90	0	99	44	11	11	33	1.75
12864906--12865046	75	1.9	76	83	1	185	43	12	9	33	1.76
12866440--12866499	13	5.0	12	76	17	54	20	1	5	73	1.11
12866546--12866596	24	2.2	24	82	6	61	17	3	1	76	1.03
12866566--12866707	24	6.3	22	71	18	89	28	4	1	66	1.19
12866569--12866716	41	3.6	41	73	13	124	27	4	2	65	1.23
12867521--12867666	21	6.5	21	71	18	84	19	2	3	74	1.06
12867520--12867667	17	8.8	17	69	19	89	20	2	3	74	1.06
12867520--12867572	4	12.8	4	84	7	70	20	0	3	75	0.96
12867596--12867687	5	17.4	5	78	16	89	15	4	2	78	1.01
12867545--12867697	37	4.1	35	75	18	114	19	3	2	73	1.10
12867724--12867991	59	4.5	59	84	3	360	43	6	13	36	1.70
12870991--12871043	22	2.4	22	84	6	63	16	3	9	69	1.30
12871882--12871952	18	3.9	17	78	14	70	81	0	14	4	0.83
12871893--12871968	18	4.7	15	75	21	50	80	0	14	5	0.88
12871882--12871942	22	3.0	21	77	17	65	81	0	13	4	0.83
12871891--12871942	19	2.5	20	84	15	70	84	0	11	3	0.74
12871881--12871960	9	8.6	9	75	19	58	78	0	16	5	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12871881--12871970	26	3.6	25	73	10	78	77	0	16	5	0.94
12871916--12871972	16	4.1	14	79	20	66	78	0	17	3	0.88
12873322--12873617	41	7.1	41	86	5	364	23	16	22	36	1.94
12873322--12873617	124	2.4	124	87	1	405	23	16	22	36	1.94
12873635--12873664	13	2.3	13	100	0	60	93	6	0	0	0.35
12873623--12873673	21	2.4	22	83	9	70	86	7	0	5	0.71
12873624--12873664	11	3.9	10	84	9	55	90	9	0	0	0.46
12873972--12874069	25	4.2	24	75	10	89	24	4	4	67	1.26
12873950--12874083	45	3.0	44	75	19	125	24	4	3	67	1.26
12874988--12875070	27	3.3	26	75	22	79	19	3	0	77	0.92
12875003--12875101	5	18.8	5	76	20	80	18	4	1	76	0.99
12874988--12875101	17	6.8	16	75	16	97	19	4	0	75	1.02
12875002--12875101	6	17.7	6	71	17	72	18	4	1	77	0.99
12875010--12875101	22	4.4	20	74	20	82	18	3	1	77	0.97
12875011--12875101	39	2.3	40	86	7	132	18	3	1	76	0.98
12875123--12875410	59	4.9	57	81	9	314	43	6	14	35	1.71
12875123--12875409	118	2.4	119	91	1	463	43	6	14	35	1.71
12883405--12883794	117	3.4	117	89	3	576	35	14	7	42	1.74
12883405--12883795	176	2.2	172	84	7	493	35	14	7	42	1.74
12883405--12883795	59	6.7	58	83	6	495	35	14	7	42	1.74
12883820--12883907	5	16.4	5	74	21	72	78	2	5	13	1.03
12883810--12883908	17	5.6	17	74	20	78	77	2	6	14	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12883823--12883922	28	3.7	25	77	16	85	77	2	6	15	1.06
12883820--12883908	38	2.4	37	87	11	119	78	2	5	13	1.02
12883820--12883907	43	2.0	42	83	12	108	78	2	5	13	1.03
12883931--12883974	4	10.8	4	80	4	52	77	4	0	18	0.94
12883931--12883986	29	1.9	29	89	7	87	78	5	0	16	0.92
12884855--12884937	25	3.5	24	79	12	82	66	3	6	24	1.31
12884839--12884974	22	6.0	23	72	16	92	66	2	4	26	1.25
12884839--12884968	24	5.7	23	72	18	101	65	3	4	26	1.27
12884826--12884974	41	3.6	40	70	15	104	66	3	4	25	1.27
12885274--12885536	42	6.3	41	88	4	339	36	22	17	24	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117