genome.fa.s101.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  108  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18779107--18779558	243	1.9	243	84	0	618	24	32	23	19	1.97
18781250--18781301	26	2.0	26	92	3	88	26	19	25	28	1.98
18783005--18783057	26	2.0	26	92	0	88	30	18	26	24	1.98
18784763--18784815	26	2.0	26	100	0	106	26	20	26	26	1.99
18786525--18786576	26	2.0	26	96	0	95	30	21	17	30	1.96
18785654--18793772	893	9.0	899	80	7	8497	25	23	24	26	2.00
18788303--18788355	26	2.0	26	96	0	97	26	18	26	28	1.98
18790165--18790218	27	2.0	26	89	3	81	29	20	22	27	1.98
18791053--18791102	26	1.9	26	87	0	73	30	16	28	26	1.96
18791950--18792002	26	2.0	26	96	0	97	26	18	26	28	1.98
18792843--18792895	26	2.0	26	92	0	88	32	16	22	28	1.96
18779536--18793772	896	16.0	892	80	8	14535	25	23	24	26	2.00
18794471--18794522	26	2.0	26	100	0	104	26	19	26	26	1.99
18796067--18797853	897	2.0	897	89	1	2733	25	24	24	25	2.00
18798556--18798608	26	2.0	26	92	0	88	28	18	24	28	1.98
18799457--18799509	26	2.0	26	96	0	97	26	18	26	28	1.98
18797806--18801433	901	4.1	899	83	5	4516	25	23	24	26	2.00
18797806--18801433	893	4.1	872	82	6	4053	25	23	24	26	2.00
18801223--18801274	26	2.0	26	92	3	88	28	13	25	32	1.93
18801407--18801462	26	2.2	26	96	0	103	28	19	23	28	1.98
18801217--18801618	185	2.2	185	81	4	463	23	25	28	23	2.00
18801496--18801813	171	1.9	171	85	2	442	22	27	30	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18802460--18802512	26	2.0	26	96	0	97	28	20	24	26	1.99
18804242--18804294	26	2.0	26	96	0	97	22	22	26	28	1.99
18805141--18805193	26	2.0	26	96	0	97	26	18	26	28	1.98
18806029--18806081	26	2.0	26	88	0	79	28	16	24	30	1.97
18806920--18806972	26	2.0	26	96	0	97	26	18	26	28	1.98
18801669--18807556	891	6.6	889	86	3	7758	25	23	24	26	2.00
18809455--18809495	17	2.4	17	91	0	64	24	41	21	12	1.87
18810418--18810468	26	2.0	26	92	0	84	29	15	25	29	1.96
18816221--18821271	878	5.7	871	84	5	6049	25	23	24	26	2.00
18819618--18819670	26	2.0	26	96	0	97	26	18	26	28	1.98
18820520--18820573	26	2.1	26	92	0	90	27	14	25	31	1.95
18817864--18821271	901	3.8	901	85	3	4165	25	23	24	26	2.00
18823011--18823063	26	2.0	26	96	0	97	26	18	26	28	1.98
18821916--18823543	810	2.0	811	85	3	2211	24	24	25	26	2.00
18823903--18823955	26	2.0	26	92	0	88	28	18	24	28	1.98
18826513--18826563	26	2.0	26	92	0	84	29	17	21	31	1.96
18827406--18827458	26	2.0	26	88	0	79	26	18	24	30	1.98
18826106--18829255	893	3.5	892	86	4	4161	26	23	24	25	2.00
18828299--18828349	26	2.0	26	92	0	84	31	15	25	27	1.96
18829203--18829281	26	3.0	26	100	0	158	26	16	26	30	1.97
18829417--18829468	26	2.0	26	84	0	68	28	15	23	32	1.95
18830313--18830365	26	2.0	26	100	0	106	26	20	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18830107--18831410	667	2.0	641	85	5	1753	23	28	27	21	1.99
18831878--18831930	26	2.0	26	89	7	81	26	16	26	30	1.97
18832777--18832829	26	2.0	26	88	0	79	30	22	22	24	1.99
18833677--18833755	26	3.0	26	96	0	140	29	18	25	26	1.98
18830762--18834625	904	4.3	907	85	4	5023	25	25	24	24	2.00
18836245--18836297	26	2.0	26	92	0	88	28	18	24	28	1.98
18836467--18836516	24	2.1	24	100	0	100	24	26	46	4	1.70
18837219--18837271	26	2.0	26	100	0	106	26	20	26	26	1.99
18838098--18841364	877	3.7	870	84	6	4042	25	23	24	26	2.00
18842205--18842257	26	2.0	26	88	0	79	26	16	22	33	1.96
18843778--18843830	26	2.0	26	85	7	72	28	16	28	26	1.97
18844671--18844723	26	2.0	26	92	0	88	26	18	24	30	1.98
18845525--18845575	26	2.0	26	96	0	93	27	19	23	29	1.98
18846365--18849842	868	3.9	867	85	5	4364	25	23	24	26	2.00
18848051--18848103	26	2.0	26	92	0	88	28	15	24	32	1.95
18847184--18849943	901	3.1	892	87	3	3847	25	23	24	25	2.00
18850891--18850943	26	2.0	26	92	0	88	30	18	24	26	1.98
18854020--18854072	26	2.0	26	100	0	106	26	26	20	26	1.99
18854910--18854962	26	2.0	26	88	0	79	28	22	18	30	1.98
18855575--18855630	28	2.0	29	86	10	80	23	28	17	30	1.97
18856471--18856523	26	2.0	26	88	0	79	30	22	18	28	1.98
18856312--18856730	185	2.3	185	86	1	572	22	26	28	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18856656--18856708	26	2.0	26	96	0	97	30	24	16	28	1.97
18858449--18858501	26	2.0	26	96	0	97	28	26	20	24	1.99
18859344--18859394	26	2.0	26	92	0	84	31	21	17	29	1.96
18861122--18861174	26	2.0	26	100	0	106	26	26	20	26	1.99
18856497--18863251	894	7.6	894	85	3	8559	25	24	23	25	2.00
18862020--18862070	26	2.0	26	92	0	84	29	21	17	31	1.96
18862917--18862969	26	2.0	26	96	0	97	28	26	18	26	1.98
18863757--18867088	874	3.8	857	74	11	2649	25	24	23	25	2.00
18866315--18866366	26	2.0	25	96	3	95	26	23	21	28	1.99
18869473--18869525	26	2.0	26	96	0	97	28	26	18	26	1.98
18870172--18870489	171	1.9	171	83	4	417	19	30	27	23	1.98
18870526--18870578	26	2.0	26	96	0	97	26	24	20	28	1.99
18871580--18871632	26	2.0	26	85	7	72	28	26	18	26	1.98
18870552--18875015	873	5.1	874	83	5	5231	25	24	24	25	2.00
18873352--18873404	26	2.0	26	96	0	97	28	26	18	26	1.98
18879881--18879933	26	2.0	26	92	0	88	28	22	16	32	1.96
18880730--18880782	26	2.0	26	96	0	97	28	26	18	26	1.98
18881631--18881683	26	2.0	26	85	7	72	26	22	20	30	1.98
18880357--18893561	894	14.9	889	80	9	13505	25	25	23	25	2.00
18882517--18882569	26	2.0	26	96	0	97	28	24	20	26	1.99
18886083--18886135	25	2.0	27	89	7	83	26	22	20	30	1.98
18887823--18887875	26	2.0	26	100	0	106	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18889578--18889630	26	2.0	26	92	0	88	24	26	18	30	1.98
18890452--18890504	26	2.0	26	96	0	97	28	24	20	26	1.99
18888710--18893560	874	5.5	894	86	6	6616	25	24	24	25	2.00
18891347--18891399	26	2.0	26	100	0	106	26	26	20	26	1.99
18892231--18892299	19	2.9	26	72	28	89	24	24	20	30	1.99
18891368--18893169	906	2.0	902	89	3	2726	25	25	24	25	2.00
18894039--18894462	60	7.0	60	83	10	524	32	13	8	45	1.73
18894039--18894453	122	3.4	120	89	5	622	32	13	8	45	1.74
18894480--18894552	6	12.3	6	71	18	55	79	1	4	15	0.95
18894480--18894540	19	3.4	18	82	6	79	80	1	3	14	0.92
18894480--18894552	17	4.1	17	82	5	65	79	1	4	15	0.95
18894465--18894562	36	2.5	41	72	21	102	75	2	6	16	1.09
18895841--18895897	10	5.5	10	85	10	71	0	0	14	85	0.59
18895840--18895891	12	4.3	12	83	9	70	0	0	13	86	0.57
18895840--18895896	23	2.5	22	86	8	78	0	0	14	85	0.59
18895847--18895891	13	3.4	14	85	11	60	0	0	13	86	0.57
18895840--18895896	26	2.2	24	85	11	78	0	0	14	85	0.59
18895905--18896157	41	6.1	41	95	2	429	35	23	18	22	1.96
18895905--18896157	123	2.0	124	96	2	474	35	23	18	22	1.96
18897180--18897249	8	8.6	8	72	12	54	11	7	1	80	0.97
18897161--18897251	41	2.2	42	86	11	125	14	10	1	73	1.15
18897173--18897251	10	7.7	10	69	10	52	12	8	1	77	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18907648--18907825	58	2.9	60	81	9	209	32	12	8	46	1.73
18907845--18907915	6	12.3	6	72	14	60	80	1	4	14	0.93
18907849--18907903	17	3.2	17	84	5	76	81	1	3	12	0.89
18907858--18907915	17	3.4	17	72	13	57	79	1	5	13	0.98
18907842--18908004	15	10.5	15	67	17	59	76	3	4	15	1.09
18908275--18908314	20	2.0	20	85	0	53	17	17	25	40	1.91
18908892--18909240	159	2.2	159	89	1	520	21	29	28	20	1.98
18910121--18910173	26	2.0	26	96	0	97	26	24	20	28	1.99
18911428--18911480	26	2.0	26	92	7	90	26	22	20	30	1.98
18913215--18913266	26	2.0	25	88	3	77	26	23	21	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117