genome.fa.s101.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  96  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17194045--17194097	26	2.0	26	96	0	97	28	20	24	26	1.99
17191249--17194822	724	5.0	713	84	5	4060	26	23	23	26	2.00
17196345--17196397	26	2.0	26	92	0	88	26	13	26	33	1.93
17197207--17197264	26	2.2	27	90	3	91	25	17	25	31	1.97
17198881--17198933	26	2.0	26	92	0	88	28	18	24	28	1.98
17197167--17199631	802	3.0	804	79	8	2356	26	22	24	27	2.00
17200631--17200683	26	2.0	26	88	0	79	30	18	24	26	1.98
17201523--17201575	26	2.0	26	85	0	70	28	15	26	30	1.96
17204136--17204186	26	2.0	25	84	3	66	29	15	23	31	1.95
17202619--17205151	896	2.8	897	86	3	3398	25	23	23	27	2.00
17205033--17205085	26	2.0	26	89	7	81	26	18	24	30	1.98
17212490--17212542	26	2.0	26	96	0	97	26	18	26	28	1.98
17213380--17213432	26	2.0	26	85	0	70	30	16	26	26	1.97
17214105--17214162	26	2.2	26	93	0	98	27	18	20	32	1.97
17214132--17214501	159	2.3	159	86	0	506	22	28	28	20	1.99
17215158--17215210	26	2.0	26	96	0	97	26	20	24	28	1.99
17214359--17216588	863	2.5	861	87	5	2988	24	22	24	27	2.00
17218247--17218299	26	2.0	26	92	0	88	26	20	26	26	1.99
17217604--17221283	889	4.1	869	84	5	4227	25	23	24	25	2.00
17220010--17220062	26	2.0	26	92	0	88	28	20	22	28	1.99
17220916--17220968	26	2.0	26	100	0	106	26	20	26	26	1.99
17223029--17223081	26	2.0	26	92	7	90	26	16	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17226460--17226512	26	2.0	26	96	0	97	26	18	26	28	1.98
17226486--17230011	853	4.0	853	82	7	4004	25	23	24	26	2.00
17230685--17230737	26	2.0	26	85	0	70	30	18	22	28	1.98
17234139--17239105	705	7.1	705	90	5	7705	25	22	24	26	2.00
17239891--17239941	26	2.0	26	92	0	84	31	19	17	31	1.95
17240772--17240824	26	2.0	26	92	0	88	24	18	26	30	1.98
17242254--17242306	26	2.0	26	96	0	97	28	20	24	26	1.99
17242673--17242724	26	2.0	26	88	0	77	21	9	15	53	1.70
17243142--17243194	26	2.0	26	100	0	106	26	20	26	26	1.99
17244043--17244095	26	2.0	26	96	0	97	28	20	24	26	1.99
17241591--17252623	889	12.3	893	77	9	9730	25	24	23	26	2.00
17244926--17244976	25	2.0	25	88	7	77	27	21	25	25	1.99
17250369--17250421	26	2.0	26	92	0	88	26	22	24	26	2.00
17246238--17252622	885	7.2	866	79	11	4457	25	24	23	26	2.00
17252828--17252881	26	2.1	26	92	0	90	27	22	24	25	2.00
17252854--17255456	864	3.0	869	86	4	3562	25	24	24	25	2.00
17255443--17255495	26	2.0	26	85	0	70	26	22	24	26	2.00
17255288--17256031	380	2.0	366	84	4	970	22	31	25	19	1.98
17256721--17256773	26	2.0	26	88	0	79	26	15	26	32	1.95
17257590--17257928	159	2.1	158	82	2	421	25	29	27	17	1.97
17257742--17259999	782	2.9	778	84	5	2728	25	23	24	26	2.00
17260147--17260199	26	2.0	26	96	0	97	28	18	26	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17261737--17261789	26	2.0	26	96	0	97	28	18	26	26	1.98
17264648--17264700	26	2.0	26	92	0	88	30	26	18	24	1.98
17263896--17265585	889	1.9	883	87	2	2492	26	24	23	25	2.00
17265529--17265581	26	2.0	26	85	7	72	32	22	20	24	1.98
17267082--17270481	862	3.9	866	85	4	4286	26	24	23	25	2.00
17269685--17269737	26	2.0	26	88	0	79	28	24	18	28	1.98
17273006--17273056	26	2.0	26	96	0	93	27	21	19	31	1.97
17273918--17273970	26	2.0	26	96	0	97	28	26	18	26	1.98
17270415--17278895	863	9.7	866	81	8	8826	26	24	23	25	2.00
17276505--17276557	26	2.0	26	96	0	97	26	26	18	28	1.98
17277374--17277426	26	2.0	26	96	0	97	28	26	18	26	1.98
17280371--17280423	26	2.0	26	96	0	97	26	24	20	28	1.99
17281254--17281306	26	2.0	26	92	0	88	28	24	18	28	1.98
17279495--17286359	895	7.6	893	84	5	8002	25	24	24	25	2.00
17282145--17282195	26	2.0	26	88	0	75	31	19	17	31	1.95
17285717--17285769	26	2.0	26	92	0	88	26	22	22	28	1.99
17288525--17288875	122	2.9	121	93	3	588	32	13	8	45	1.74
17288897--17288961	18	3.7	18	87	2	96	81	0	3	15	0.81
17288911--17288983	27	2.6	29	79	16	82	78	0	5	16	0.94
17288892--17288972	11	6.9	11	78	10	72	80	1	3	14	0.92
17288887--17288973	17	5.0	16	75	20	68	79	1	4	14	0.95
17288897--17288973	18	4.4	18	83	8	65	80	0	3	15	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17290006--17290354	158	2.2	159	88	2	506	22	28	27	21	1.99
17291236--17291287	26	2.0	25	96	3	95	26	26	19	26	1.99
17291936--17292310	159	2.4	159	86	5	494	19	28	29	22	1.98
17292284--17292336	26	2.0	26	100	0	106	26	26	20	26	1.99
17292093--17299339	895	8.1	897	82	5	8433	25	24	24	25	2.00
17294079--17294130	26	2.0	26	96	0	95	26	25	19	28	1.98
17294973--17295025	26	2.0	26	92	0	88	28	22	22	26	1.99
17296600--17296943	158	2.2	157	84	4	433	18	28	29	22	1.98
17296927--17296979	26	2.0	26	85	0	70	33	22	16	26	1.96
17298562--17298614	26	2.0	26	96	0	97	26	26	18	28	1.98
17298588--17300030	708	2.1	697	87	3	2065	26	23	23	26	2.00
17300155--17300207	26	2.0	26	96	0	97	26	24	20	28	1.99
17301059--17301110	25	2.0	26	92	3	88	28	25	19	26	1.98
17301084--17303496	875	2.8	861	85	5	3131	26	23	23	25	2.00
17302955--17304664	578	3.0	577	91	1	2768	29	23	20	26	1.99
17304850--17304902	26	2.0	26	92	0	88	30	26	18	24	1.98
17308067--17311350	904	3.8	860	84	4	4030	26	24	23	25	2.00
17310557--17310609	26	2.0	26	92	0	88	30	24	16	28	1.97
17312167--17312219	26	2.0	26	92	0	88	30	24	16	28	1.97
17312193--17313679	717	2.1	714	86	3	2078	26	24	22	25	2.00
17312896--17317960	866	5.8	866	82	7	5831	26	24	23	25	2.00
17315505--17315555	26	2.0	26	92	0	84	29	21	17	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17316418--17316470	26	2.0	26	89	7	81	28	22	20	28	1.99
17318852--17318904	26	2.0	26	92	0	88	28	24	18	28	1.98
17320644--17320694	26	2.0	26	88	0	75	31	19	17	31	1.95
17321539--17321591	26	2.0	26	88	0	79	30	24	16	28	1.97
17318008--17327428	896	10.5	898	87	3	12643	25	24	24	25	2.00
17324239--17324291	26	2.0	26	92	0	88	26	22	22	28	1.99
17325145--17325195	26	2.0	25	92	3	84	27	23	19	29	1.98
17326045--17326097	26	2.0	26	92	0	88	28	24	18	28	1.98
17326946--17326998	26	2.0	26	96	0	97	28	26	18	26	1.98
17329831--17329883	26	2.0	26	92	0	88	28	24	18	28	1.98
17330734--17330786	26	2.0	26	92	0	88	26	22	20	30	1.98
17328954--17336080	903	8.1	897	73	12	4998	26	24	24	25	2.00
17333344--17333396	26	2.0	26	92	0	88	28	24	18	28	1.98
17334236--17334288	26	2.0	26	88	0	79	26	20	18	33	1.96
17337652--17337702	26	2.0	26	96	0	93	27	27	17	27	1.98
17338515--17338567	26	2.0	26	92	0	88	30	26	16	26	1.97
17336092--17339304	863	3.7	859	84	7	3777	26	23	23	26	2.00
17340836--17340888	26	2.0	26	92	0	88	26	22	20	30	1.98
17340112--17343742	717	5.1	716	86	3	4790	26	23	23	26	2.00
17344781--17344833	26	2.0	26	96	0	97	26	24	20	28	1.99
17343006--17349006	903	6.7	888	84	5	7175	25	24	24	25	2.00
17346519--17346571	26	2.0	26	96	0	97	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17347425--17347477	26	2.0	26	96	0	97	28	26	18	26	1.98
17348329--17348381	26	2.0	26	96	0	97	26	20	20	32	1.98
17345731--17349006	904	3.6	902	87	2	4581	25	23	24	26	2.00
17348355--17350459	758	2.9	697	84	6	2619	27	23	23	25	2.00
17350689--17350741	26	2.0	26	89	7	81	28	22	16	32	1.96
17352206--17352267	30	2.1	30	96	0	115	16	38	16	29	1.90
17349899--17353983	902	4.6	871	81	9	4002	26	23	23	26	2.00
17354145--17354532	205	1.9	206	88	0	589	17	27	28	26	1.98
17355299--17355351	26	2.0	26	92	0	88	30	26	16	26	1.97
17354426--17356950	878	2.9	879	87	4	3446	25	23	24	26	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117