genome.fa.s101.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  62  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11472508--11472544	10	3.6	10	92	3	56	0	13	0	86	0.57
11472706--11472736	16	1.9	16	93	0	53	61	22	3	12	1.46
11473149--11473190	11	3.9	11	90	3	59	57	0	42	0	0.99
11473420--11473446	11	2.5	11	100	0	54	29	0	0	70	0.88
11473618--11473656	17	2.4	16	87	12	53	74	0	5	20	1.01
11474868--11474898	16	1.9	16	93	0	53	74	0	3	22	0.96
11479865--11479911	20	2.3	21	78	14	53	57	6	17	19	1.60
11480780--11480880	45	2.3	44	89	3	150	32	12	13	40	1.83
11480820--11481098	99	2.8	99	82	2	292	26	13	17	41	1.88
11480952--11481130	99	1.8	99	82	0	232	25	14	20	39	1.90
11481399--11481432	9	3.6	10	88	11	54	0	11	0	88	0.52
11481399--11481437	17	2.2	17	90	4	60	0	12	0	87	0.55
11481613--11481672	23	2.7	21	76	21	59	70	13	5	11	1.33
11482187--11482235	22	2.2	22	100	0	98	22	18	28	30	1.97
11482277--11482316	19	2.1	19	85	4	53	25	7	0	67	1.16
11482277--11482371	23	4.3	21	74	18	61	23	6	1	69	1.17
11484038--11484125	41	2.1	41	83	4	106	34	11	11	43	1.77
11488212--11488262	18	2.9	18	82	2	50	60	0	0	39	0.97
11488245--11488274	15	2.0	15	93	0	51	63	0	0	36	0.95
11488233--11488267	18	1.9	18	88	11	54	68	0	0	31	0.90
11493149--11493193	21	2.1	21	84	8	56	33	22	13	31	1.92
11495768--11496134	188	2.0	187	83	2	468	35	13	12	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11495940--11496409	238	2.0	239	83	3	608	34	12	12	40	1.80
11496181--11496596	187	2.2	187	87	2	586	35	12	12	40	1.80
11496583--11496939	178	2.0	179	86	1	500	35	11	13	39	1.81
11497761--11497834	28	2.6	28	82	0	94	21	5	27	45	1.73
11499533--11499577	21	2.1	21	84	8	56	28	2	6	62	1.33
11501268--11501558	125	2.3	127	82	9	339	36	17	12	32	1.88
11501373--11501694	179	1.8	178	86	2	466	35	17	12	34	1.87
11501191--11501752	304	1.8	304	81	4	695	35	17	13	33	1.88
11507587--11507657	27	2.6	26	80	12	72	36	4	1	57	1.27
11507732--11507767	18	1.9	19	88	5	56	58	8	0	33	1.28
11509885--11509999	36	3.2	37	80	6	121	50	29	1	18	1.57
11509988--11510024	19	1.9	19	88	0	56	43	32	2	21	1.67
11510056--11510095	17	2.4	17	86	0	53	45	25	0	30	1.54
11510164--11510223	19	3.2	19	78	2	68	45	35	1	18	1.60
11515226--11515262	14	2.8	13	88	11	58	45	8	0	45	1.32
11515233--11515263	14	2.2	14	100	0	62	54	6	0	38	1.26
11515258--11515282	7	3.6	7	100	0	50	84	0	0	16	0.63
11516940--11516993	23	2.3	24	81	12	67	48	7	11	33	1.67
11516954--11516997	23	2.0	22	95	4	79	45	9	15	29	1.77
11521347--11521379	17	1.9	17	88	11	50	78	0	15	6	0.93
11524977--11525011	18	1.9	18	88	0	52	62	8	2	25	1.38
11525793--11525902	37	2.9	38	77	6	116	36	13	5	44	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11529906--11529967	11	5.5	11	81	11	72	77	0	20	1	0.85
11529911--11529967	23	2.5	22	86	8	71	78	0	19	1	0.83
11529918--11529967	12	4.3	12	75	10	59	80	0	20	0	0.72
11529893--11529976	11	8.1	10	74	11	55	75	0	21	3	0.96
11531275--11531310	3	12.0	3	100	0	72	66	0	0	33	0.92
11532445--11532483	20	2.0	20	84	0	51	64	2	0	33	1.08
11532506--11532530	11	2.3	11	100	0	50	76	0	0	24	0.80
11532558--11532613	30	1.9	30	85	3	78	44	10	0	44	1.38
11532756--11532816	10	6.0	10	74	1	50	54	13	1	31	1.49
11532822--11532866	10	4.8	10	78	13	51	57	2	2	37	1.23
11532820--11532857	19	2.0	19	94	0	67	52	2	2	42	1.29
11532824--11532865	19	2.2	19	86	0	57	61	2	2	33	1.21
11532908--11532946	19	2.1	19	90	4	62	56	5	2	35	1.35
11533295--11533337	16	2.8	15	89	6	68	16	2	9	72	1.21
11533367--11533403	18	2.1	18	90	10	58	24	2	2	70	1.14
11533444--11533495	10	5.6	9	76	14	52	26	5	9	57	1.53
11533597--11533649	20	2.7	20	91	5	81	33	0	11	54	1.36
11533672--11533740	28	2.5	28	77	11	79	30	2	8	57	1.43
11533715--11533754	19	2.2	18	86	4	53	22	2	10	65	1.35
11533722--11533802	29	2.9	28	81	1	90	27	0	9	62	1.26
11533729--11533766	18	2.1	19	90	5	60	28	0	5	65	1.14
11534058--11536082	233	8.8	229	72	13	943	52	5	9	32	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11535020--11535900	441	2.0	436	79	9	943	52	5	9	31	1.58
11535519--11536283	242	3.2	239	77	10	641	51	6	10	31	1.61
11537650--11537706	18	3.1	17	82	14	62	3	22	0	73	0.98
11541914--11541981	28	2.3	29	75	7	75	55	2	2	38	1.30
11543432--11543489	1	58.0	1	75	0	53	0	10	1	87	0.60
11543437--11543489	20	2.7	18	81	16	61	0	11	1	86	0.64
11548431--11548464	17	2.1	17	94	5	61	5	0	14	79	0.91
11550315--11550399	43	2.0	43	86	4	118	44	8	16	30	1.77
11551773--11551811	20	2.0	20	85	10	53	28	10	25	35	1.89
11552353--11552391	20	2.0	20	90	10	62	30	5	30	33	1.79
11555166--11555205	21	2.0	20	85	5	53	62	2	0	35	1.09
11555831--11555997	14	11.4	14	74	23	114	20	0	33	45	1.52
11555859--11555987	20	6.3	21	80	16	123	20	0	35	43	1.53
11555867--11555986	7	17.7	7	81	10	142	20	0	35	44	1.52
11556079--11556115	14	2.5	15	86	8	58	45	18	10	24	1.81
11556953--11557013	22	2.8	22	73	11	63	54	0	21	24	1.45
11558333--11558379	21	2.1	24	84	11	64	36	10	4	48	1.57
11558555--11558845	40	7.3	41	72	9	172	36	8	15	38	1.79
11558734--11558886	41	3.8	41	77	10	127	37	10	15	36	1.81
11558815--11558912	40	2.4	40	83	8	110	38	9	13	38	1.76
11565859--11565948	39	2.3	39	88	3	135	35	12	20	32	1.89
11567032--11567071	20	2.0	20	90	0	62	45	15	10	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11569106--11569174	18	3.8	17	75	11	66	49	34	1	14	1.53
11569093--11569202	37	2.9	37	83	4	105	48	37	0	13	1.49
11569150--11569226	31	2.5	30	87	8	102	51	36	0	11	1.38
11569092--11569211	18	6.8	18	68	15	54	49	35	0	14	1.49
11569168--11569282	49	2.4	48	80	4	124	52	36	0	10	1.42
11569187--11569341	50	3.3	45	76	13	127	47	37	3	12	1.57
11569309--11569350	19	2.2	19	87	8	59	45	45	0	9	1.36
11571408--11571493	28	3.2	27	80	8	104	22	0	33	44	1.53
11571441--11571526	7	12.9	7	70	16	58	23	1	29	46	1.60
11571461--11571529	7	10.8	6	76	17	59	21	1	28	47	1.59
11571462--11571524	34	1.9	33	84	9	85	22	1	28	47	1.60
11572525--11572585	22	2.8	23	80	11	76	57	0	19	22	1.41
11575591--11575746	78	2.0	79	94	1	278	41	13	5	39	1.66
11588709--11588788	20	4.0	20	68	18	58	2	18	6	72	1.17
11590040--11590078	18	2.0	20	90	9	64	48	5	0	46	1.24
11590041--11590087	16	2.6	17	83	12	51	44	4	0	51	1.21
11590793--11590870	30	2.6	31	76	15	76	47	1	3	47	1.28
11593422--11593469	18	2.6	18	80	6	51	47	2	4	45	1.33
11593996--11594183	89	2.1	89	83	5	229	46	9	8	36	1.66
11599842--11599879	19	2.0	19	85	10	51	13	5	13	68	1.37
11612976--11613022	15	3.3	15	85	11	71	38	8	6	46	1.60
11612973--11613013	13	3.0	13	86	13	64	39	7	7	46	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11615103--11615142	20	2.1	19	85	4	53	57	2	10	30	1.45
11616462--11616499	14	2.7	14	84	11	51	44	0	0	55	0.99
11618129--11618184	23	2.4	24	84	3	69	14	1	33	50	1.53
11618116--11618212	13	7.8	13	68	18	55	13	1	32	52	1.47
11618140--11618187	24	2.0	23	92	4	78	10	0	37	52	1.36
11619441--11619695	140	1.8	142	86	1	370	44	12	10	32	1.77
11620438--11620481	8	5.4	8	86	5	52	6	9	0	84	0.79
11620436--11620481	16	2.8	17	83	3	58	6	10	0	82	0.83
11620857--11620991	33	4.0	33	71	2	99	51	12	14	20	1.75
11620810--11620991	67	2.7	67	81	5	188	53	10	13	21	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117