genome.fa.s101.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  48  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8864653--8864725	31	2.4	31	90	4	112	20	0	31	47	1.50
8864653--8864725	16	4.7	15	78	6	74	20	0	31	47	1.50
8864661--8864721	16	3.9	16	82	4	79	21	0	31	47	1.51
8866298--8866339	23	1.9	23	90	9	70	42	0	0	57	0.99
8866267--8866332	27	2.4	27	85	5	80	28	0	1	69	0.97
8868286--8868340	26	2.1	26	86	3	74	50	7	0	41	1.30
8868660--8868690	2	15.5	2	100	0	62	51	0	0	48	1.00
8868907--8868958	2	26.5	2	88	3	79	48	1	1	48	1.24
8869338--8869367	2	15.0	2	92	0	51	50	3	0	46	1.18
8870170--8870219	24	2.1	24	100	0	100	62	4	0	34	1.14
8871712--8871740	10	3.0	10	95	5	51	37	0	0	62	0.96
8872657--8872685	12	2.4	12	100	0	58	10	41	41	6	1.66
8875130--8875157	2	14.0	2	100	0	56	50	0	0	50	1.00
8875565--8875619	26	2.1	26	86	3	74	50	7	0	41	1.30
8874613--8875762	599	1.9	599	91	2	1889	43	7	7	42	1.61
8876173--8876218	2	23.0	2	100	0	92	50	0	0	50	1.00
8877204--8877237	9	3.6	9	85	14	50	35	0	0	64	0.94
8876816--8877587	257	3.0	257	88	4	1071	35	7	4	52	1.51
8877364--8877438	39	1.9	38	86	7	107	26	5	2	65	1.27
8877373--8877698	166	2.0	164	85	5	446	34	5	5	54	1.46
8886964--8887006	20	2.2	20	87	8	61	16	0	9	74	1.06
8886977--8887053	24	3.0	25	81	7	84	16	2	7	72	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8886991--8887049	30	1.9	31	86	10	86	15	3	6	74	1.16
8890069--8890109	23	1.9	20	85	14	55	63	9	0	26	1.25
8894313--8894372	21	2.9	21	75	2	59	41	1	1	55	1.20
8894334--8894391	24	2.3	25	85	11	82	44	0	1	53	1.10
8894368--8894446	17	4.4	17	73	18	63	48	1	1	49	1.17
8894404--8894447	18	2.4	18	84	0	52	52	0	0	47	1.00
8894345--8894447	39	2.7	35	71	18	82	49	0	0	48	1.14
8896959--8896986	14	2.0	14	100	0	56	50	0	0	50	1.00
8897230--8897324	15	6.1	15	70	11	57	27	2	22	48	1.62
8898550--8898628	31	2.4	33	85	8	99	37	0	0	62	0.96
8898742--8898780	6	6.2	6	88	8	51	0	5	17	76	0.96
8899017--8899044	14	2.0	14	100	0	56	50	0	0	50	1.00
8899287--8899389	16	6.5	15	69	12	55	25	0	27	47	1.52
8899301--8899383	16	5.2	16	75	1	69	21	0	30	48	1.51
8899294--8899386	32	3.0	32	87	7	122	24	0	29	46	1.53
8899301--8899400	32	3.2	30	83	14	114	24	1	28	47	1.59
8900643--8900718	20	3.6	20	77	16	73	34	0	0	65	0.93
8900909--8900948	19	2.0	20	85	4	55	0	5	17	77	0.94
8900909--8900948	13	3.0	13	88	3	53	0	5	17	77	0.94
8902839--8902935	50	1.9	50	89	0	149	35	10	8	46	1.68
8903023--8903188	82	2.0	80	82	8	194	39	1	10	48	1.45
8904158--8904187	14	2.1	14	93	0	51	43	6	3	46	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8906615--8906650	18	1.9	19	88	5	56	47	5	5	41	1.50
8906616--8906709	46	2.0	46	83	0	116	44	5	6	43	1.52
8907994--8908027	17	2.0	17	88	0	50	29	0	0	70	0.87
8921532--8921570	15	2.4	17	83	12	55	43	0	0	56	0.99
8924932--8924969	18	2.1	19	85	5	51	55	2	0	42	1.14
8924920--8924972	23	2.3	23	78	12	56	50	1	1	45	1.23
8926148--8926190	12	3.4	13	78	15	54	67	2	0	30	1.03
8927247--8928026	197	3.9	197	82	6	866	37	19	12	30	1.89
8927377--8928040	246	2.7	246	83	5	749	37	19	12	31	1.89
8927254--8928039	48	16.0	48	77	8	595	37	19	12	30	1.89
8940820--8941097	136	2.1	134	90	2	432	17	7	15	58	1.60
8941028--8941086	18	3.4	17	79	6	64	25	3	6	64	1.34
8941890--8941927	8	4.8	8	100	0	76	52	0	0	47	1.00
8943752--8943798	17	2.6	18	74	19	53	51	2	0	46	1.13
8945677--8945709	10	3.3	10	95	0	57	45	0	15	39	1.46
8945887--8945920	17	2.0	17	100	0	68	52	5	0	41	1.25
8945841--8945949	21	5.1	20	75	15	78	51	3	0	44	1.25
8945877--8945960	21	4.0	20	76	10	69	50	3	2	44	1.32
8945978--8946293	13	24.2	13	68	21	98	44	1	2	51	1.23
8945968--8946376	11	36.9	11	69	22	168	45	1	1	50	1.21
8945954--8946317	142	2.6	140	81	11	408	45	1	1	50	1.22
8945956--8946455	62	8.8	58	70	19	217	47	1	1	49	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8946180--8946213	15	2.4	14	95	5	59	41	0	5	52	1.25
8945934--8946456	18	28.7	19	65	26	94	47	1	1	49	1.20
8945813--8946455	42	14.1	46	66	22	195	47	1	1	48	1.21
8946089--8946443	123	2.9	125	73	22	290	47	0	1	49	1.16
8946268--8946397	15	9.0	15	73	15	96	51	0	0	47	1.06
8945825--8946404	11	54.3	11	65	19	109	48	1	1	48	1.22
8946249--8946444	70	2.9	69	78	16	187	50	0	1	48	1.11
8949564--8949601	3	12.7	3	100	0	76	31	0	0	68	0.90
8952194--8952226	16	2.0	17	88	5	50	21	12	51	15	1.75
8952661--8953585	48	18.8	49	79	8	837	40	19	10	28	1.86
8952658--8953585	98	9.4	99	80	7	869	40	19	10	28	1.86
8962663--8962703	19	2.1	19	86	4	55	17	14	4	63	1.47
8965351--8965383	12	2.5	13	90	9	50	24	0	6	69	1.10
8970513--8970538	2	13.0	2	100	0	52	50	0	0	50	1.00
8974572--8974636	29	2.2	29	81	10	80	44	3	7	44	1.48
8975678--8975711	17	2.0	17	94	0	59	26	17	17	38	1.92
8976781--8976823	7	6.0	7	89	8	61	55	2	0	41	1.12
8976774--8976823	14	3.4	15	83	13	68	54	4	0	42	1.19
8976769--8976839	12	5.8	12	74	12	54	52	8	1	38	1.41
8976769--8976823	2	29.5	2	75	14	55	52	3	1	41	1.29
8980003--8980064	24	2.5	24	76	2	61	43	20	12	22	1.86
8981035--8981085	18	2.7	18	90	6	75	27	1	1	68	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8981034--8981083	19	2.7	18	78	9	55	28	2	2	68	1.12
8981610--8981649	20	2.0	21	85	14	57	32	0	0	67	0.91
8981920--8981961	19	2.2	19	86	4	57	57	0	0	42	0.99
8982449--8982537	30	3.0	30	81	3	99	39	11	3	46	1.56
8983599--8983623	12	2.1	12	100	0	50	36	40	8	16	1.77
8989145--8989195	20	2.5	20	83	3	66	7	5	35	50	1.55
8993518--8993551	2	17.0	2	100	0	68	50	0	0	50	1.00
8998940--8999013	38	2.0	37	82	12	89	48	2	1	47	1.24
8999123--8999180	29	2.1	29	84	12	77	50	1	1	46	1.22
8999678--8999737	23	2.6	22	76	10	57	40	1	5	53	1.33
9001244--9001286	13	3.2	12	87	9	50	27	0	2	69	1.00
9002872--9002912	18	2.3	18	82	0	55	78	7	4	9	1.10
9002967--9003014	24	2.0	25	91	4	80	68	12	2	16	1.29
9003931--9004025	29	3.3	29	77	10	99	49	0	1	49	1.07
9004793--9004835	21	2.0	21	81	0	50	25	4	2	67	1.22
9014746--9014772	13	2.1	13	100	0	54	44	0	0	55	0.99
9016035--9016110	4	19.0	4	83	0	89	43	2	6	47	1.43
9016035--9016110	6	12.7	6	84	0	89	43	2	6	47	1.43
9016035--9016110	10	7.6	10	84	0	89	43	2	6	47	1.43
9017705--9017751	21	2.3	21	81	3	51	51	0	4	44	1.21
9017714--9017771	30	1.9	31	96	3	109	50	0	3	46	1.18
9017752--9017804	16	3.2	17	79	15	58	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9017761--9017822	15	4.1	15	76	17	58	45	0	0	54	0.99
9017781--9017826	15	3.2	15	78	12	60	43	0	0	56	0.99
9018989--9019025	2	18.5	2	100	0	74	51	0	0	48	1.00
9021628--9021679	19	2.7	19	80	16	54	57	3	0	38	1.17
9025740--9025773	2	17.5	2	93	6	61	50	0	0	50	1.00
9026891--9026934	10	4.5	10	85	2	54	6	31	0	61	1.22
9028839--9028903	4	16.2	4	72	12	53	21	3	6	69	1.25
9029059--9029302	121	2.0	120	80	3	267	47	8	9	35	1.66
9029252--9029296	19	2.4	18	82	13	56	53	0	4	42	1.21
9029300--9029371	38	1.9	37	83	8	92	43	15	12	29	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117