genome.fa.s101.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  1  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--1790	713	2.5	714	87	6	2593	41	11	8	38	1.71
7--15297	362	42.4	358	70	12	5299	41	10	8	39	1.69
85--5593	181	30.8	180	74	8	2779	41	10	8	39	1.70
2986--3046	24	2.4	25	79	12	63	62	3	3	31	1.27
4527--5200	169	3.9	169	74	10	498	43	11	6	38	1.68
5619--5948	159	2.1	160	80	3	360	40	8	9	41	1.68
5777--12971	181	40.3	179	74	9	4298	41	10	8	40	1.69
5785--15296	362	26.6	358	74	9	5822	41	10	8	40	1.69
11207--11538	167	2.0	167	81	2	389	40	10	9	39	1.72
11364--12971	176	9.0	178	75	8	997	40	10	8	40	1.69
12993--15297	181	12.7	182	75	10	1619	41	10	8	39	1.69
13737--13780	17	2.5	20	75	24	53	36	11	11	40	1.77
15303--23811	180	47.9	177	71	11	3194	41	9	7	40	1.67
15347--25031	360	27.1	360	71	12	4280	41	9	7	40	1.67
20232--25014	180	26.5	179	71	11	2302	42	9	8	40	1.66
23604--24021	212	2.0	212	81	5	488	42	9	7	40	1.66
23421--24200	393	2.0	391	81	5	932	42	9	8	40	1.67
23815--24886	178	6.0	180	76	8	699	41	8	8	41	1.66
24301--24341	19	2.0	21	86	9	59	24	17	9	48	1.76
24627--24661	17	2.1	17	89	10	54	34	11	0	54	1.37
26140--27316	178	6.7	180	79	6	1085	40	10	8	41	1.68
27191--27461	149	1.8	151	82	3	350	39	12	7	40	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27316--29635	181	12.8	181	76	7	1784	41	10	8	39	1.70
27760--34583	181	38.3	179	74	10	3567	41	10	7	40	1.68
27335--29606	364	6.3	357	78	6	1877	41	11	8	39	1.70
30188--30504	172	1.8	172	84	1	429	41	11	8	39	1.70
29687--34583	180	27.5	180	75	8	3073	41	9	7	40	1.67
29644--37403	180	43.6	173	72	12	2258	41	9	7	40	1.67
29687--46298	361	46.3	358	69	13	4165	41	9	8	40	1.68
34088--34117	8	3.8	8	90	0	51	73	0	0	26	0.84
34586--46298	181	64.9	180	70	12	3850	41	9	8	40	1.68
34586--47306	541	23.5	539	70	13	3353	41	9	8	40	1.68
37931--38349	212	2.0	212	80	6	483	42	9	7	40	1.65
38632--38672	19	2.0	21	86	9	59	24	17	9	48	1.76
38143--47332	361	25.5	360	71	11	4177	41	9	8	40	1.68
38959--38992	17	2.1	17	94	5	61	35	8	0	55	1.31
40747--41285	286	1.9	285	82	4	683	37	10	8	43	1.69
41359--41659	152	2.0	151	80	3	343	38	10	9	40	1.74
41775--41814	22	1.9	22	90	10	66	37	7	10	45	1.66
41775--41818	20	2.2	19	84	15	54	34	6	11	47	1.66
42298--42606	164	1.9	167	81	11	384	43	11	7	38	1.67
45203--45255	24	2.3	22	75	15	52	54	1	3	39	1.29
41537--47253	707	8.0	701	72	12	2866	41	9	8	40	1.68
45682--45729	25	2.0	25	91	4	80	37	12	6	43	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44795--46226	553	2.6	553	78	7	1275	42	9	8	39	1.68
46517--46564	17	2.8	17	78	12	53	41	10	4	43	1.58
46289--47308	179	5.6	181	79	7	915	40	10	8	41	1.69
46713--47061	187	1.9	188	87	3	524	41	11	6	40	1.66
47197--47462	145	1.8	145	84	0	361	37	12	10	39	1.78
47449--47760	152	2.0	156	81	10	365	43	7	7	41	1.60
47604--48106	182	2.8	177	78	8	496	43	8	7	40	1.63
48231--49476	181	7.0	176	74	9	715	40	9	8	41	1.67
50276--50362	33	2.5	34	77	5	95	28	4	31	35	1.78
50307--50354	18	2.7	18	80	0	60	27	6	29	37	1.81
50684--50751	6	11.3	6	95	0	118	32	48	0	19	1.49
54155--54203	25	1.9	26	91	4	82	40	12	0	46	1.41
54732--54763	15	2.1	15	94	0	55	15	71	0	12	1.14
54731--54773	20	2.2	20	86	0	59	16	67	0	16	1.24
54884--54922	19	2.1	18	90	4	60	7	20	0	71	1.10
55524--59001	180	19.4	179	75	7	2369	40	9	8	40	1.69
55523--59001	181	19.4	178	74	8	1804	40	9	8	40	1.69
56951--56987	18	2.0	19	94	5	67	27	16	8	48	1.74
55572--59010	361	9.6	351	73	9	1841	40	9	8	40	1.69
59594--60421	351	2.3	351	80	7	880	42	9	6	41	1.64
59594--60459	180	4.8	180	77	5	808	42	9	6	40	1.63
60350--60546	108	1.8	108	80	8	240	46	7	7	38	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60455--61689	181	6.9	181	76	6	937	41	9	8	40	1.68
60749--60797	17	2.8	17	81	12	55	42	6	6	44	1.54
61753--62196	179	2.5	181	83	6	555	39	7	9	43	1.66
62026--62356	159	2.1	161	83	2	407	39	7	10	41	1.69
61853--62512	340	1.9	340	82	5	834	40	7	9	42	1.66
62182--62643	181	2.6	178	77	7	479	40	7	10	41	1.68
62734--67270	180	25.4	179	75	7	2756	40	8	9	41	1.67
62721--88922	181	145.1	179	69	12	8114	40	8	9	41	1.69
64896--68541	361	10.3	358	71	11	899	40	8	9	41	1.67
65435--65767	169	2.0	168	93	0	567	45	5	9	39	1.59
66354--66689	167	2.0	166	81	5	392	40	8	8	42	1.64
67490--67522	18	1.9	17	88	11	50	48	3	6	42	1.43
67304--80936	361	37.9	358	71	11	5664	40	8	9	41	1.68
71704--71736	16	2.1	16	88	11	50	33	9	6	51	1.58
71086--72430	674	2.0	677	80	6	1523	39	8	8	42	1.67
71761--72638	180	4.9	179	78	8	797	40	8	8	41	1.66
71761--72638	360	2.4	356	80	6	977	40	8	8	41	1.66
80940--83153	536	4.1	532	78	6	1960	39	8	9	41	1.69
82780--82822	23	1.9	23	85	4	61	34	0	2	62	1.08
80940--83153	177	12.4	181	73	9	1284	39	8	9	41	1.69
82325--83153	360	2.3	361	80	4	908	41	9	9	40	1.69
83096--83217	63	1.9	64	96	1	228	38	7	9	45	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83655--88922	180	29.3	177	71	10	2431	39	9	10	41	1.71
87010--87333	173	1.9	174	81	6	404	38	8	10	42	1.69
87274--87325	24	2.1	25	86	10	72	34	5	7	51	1.54
88578--88922	182	1.9	180	82	4	372	38	7	11	42	1.70
88921--99750	542	20.2	540	69	12	3137	40	8	9	41	1.67
88921--92362	181	19.2	179	71	10	1461	40	8	9	41	1.68
90695--91577	360	2.4	362	78	4	885	40	8	9	40	1.69
91772--91809	18	2.2	17	86	13	51	39	2	5	52	1.38
92357--92925	181	3.2	175	75	10	470	39	7	9	43	1.66
93215--93874	180	3.6	181	78	11	542	40	7	8	43	1.63
93396--93749	190	1.9	191	88	4	536	40	7	9	43	1.63
94070--99851	181	32.3	180	74	9	3565	40	8	9	42	1.67
94069--99851	357	16.2	355	73	9	3458	40	8	9	42	1.67
96023--99336	536	6.2	530	75	10	1615	39	8	9	42	1.67
98246--98287	19	2.1	21	82	8	52	52	7	7	33	1.56
99498--99826	182	1.8	182	80	5	396	38	8	10	42	1.70
99924--104208	723	6.0	705	72	11	1652	41	9	8	40	1.67
101462--101494	18	1.9	17	88	11	50	42	6	3	48	1.43
101461--101512	17	3.0	17	75	13	52	40	7	1	50	1.42
99900--105834	181	32.8	181	74	7	3669	41	9	7	40	1.67
101456--105806	723	6.0	720	74	9	1923	41	9	7	40	1.66
100085--104236	901	4.6	899	75	7	2290	41	9	8	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104356--104679	177	1.8	178	80	7	390	42	8	7	41	1.63
105862--106217	182	2.0	181	82	5	441	41	8	10	40	1.68
106304--106824	170	3.0	169	76	9	467	40	7	8	42	1.64
106667--106953	156	1.8	157	84	2	389	40	7	12	39	1.72
106667--106981	157	2.0	155	81	4	364	40	7	11	40	1.69
107095--110104	361	8.4	362	74	9	1660	39	8	9	42	1.67
107081--110104	181	16.9	181	72	10	1507	39	8	9	42	1.67
107624--114220	723	9.3	706	70	13	1935	40	8	9	41	1.68
108070--110023	903	2.2	897	86	3	2709	39	8	9	42	1.68
110036--110326	145	2.0	145	89	1	440	40	13	10	35	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117