genome.fa.s101.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  4  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324544--324582	20	2.1	18	85	9	51	69	0	2	28	1.02
328173--328220	10	4.9	10	80	14	55	72	2	10	14	1.19
328182--328214	9	3.7	9	84	15	50	75	0	9	15	1.03
328173--328214	18	2.3	18	95	4	75	76	0	9	14	1.02
328772--328807	18	2.0	18	100	0	72	61	5	11	22	1.50
330652--330693	19	2.2	19	95	0	75	30	0	2	66	1.04
330726--330776	26	2.0	26	84	0	66	60	1	0	37	1.08
332130--332211	40	2.1	38	86	4	110	34	6	6	53	1.50
332303--332388	22	4.0	21	78	14	79	62	1	0	36	1.03
335964--336003	2	20.0	2	84	0	53	52	5	0	42	1.23
336711--337079	61	6.1	59	76	11	311	34	11	6	46	1.67
336715--336992	120	2.3	121	88	4	393	34	11	7	46	1.68
336715--337039	120	2.7	119	83	6	325	35	11	7	46	1.67
337693--337735	20	2.2	20	87	4	61	67	16	0	16	1.24
337988--338085	12	7.9	13	77	19	77	68	3	2	26	1.15
337997--338085	9	10.0	9	78	10	67	68	3	2	25	1.17
338026--338087	3	20.3	3	93	3	106	66	1	1	30	1.11
338604--338653	21	2.4	21	80	6	57	36	22	8	34	1.83
338654--338859	114	1.8	114	87	2	306	34	16	14	34	1.89
338944--338994	21	2.4	21	86	3	66	37	13	13	35	1.85
338957--338996	21	1.9	21	94	0	71	37	10	12	40	1.77
339113--339319	21	9.8	21	68	7	107	36	16	9	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
339106--339319	42	5.0	42	71	14	145	36	17	8	37	1.81
339995--340043	25	2.0	25	95	0	89	22	20	8	48	1.75
348065--348503	56	7.7	56	80	9	451	37	14	6	41	1.72
348123--348503	113	3.3	114	88	5	574	37	14	6	41	1.71
348532--348666	5	26.4	5	71	16	66	73	3	4	18	1.15
348552--348618	16	3.8	17	78	20	66	79	1	5	13	0.99
348528--348608	31	2.6	31	82	9	85	77	2	6	13	1.05
349533--349582	21	2.3	21	89	3	73	62	4	8	26	1.41
349547--349582	12	3.2	12	77	22	51	58	5	5	30	1.44
353492--353713	86	2.6	86	78	5	209	20	18	13	47	1.82
355996--356027	12	2.4	14	90	10	50	25	0	0	75	0.81
360176--360233	22	2.6	24	73	18	61	50	0	1	48	1.11
361345--361501	52	3.0	52	90	1	226	24	26	9	39	1.86
361526--361567	11	3.8	11	90	0	66	50	30	0	19	1.48
361526--361568	22	2.0	22	95	0	77	48	30	0	20	1.50
362335--362388	25	2.2	24	83	12	65	46	0	3	50	1.19
362638--362680	19	2.2	20	87	4	61	44	2	0	53	1.13
362636--362703	27	2.4	27	74	13	66	45	1	1	51	1.19
364101--364166	35	2.0	35	85	14	95	57	0	4	37	1.19
364690--364729	21	1.9	22	90	10	66	57	0	0	42	0.98
364923--364971	14	3.5	14	77	8	55	59	2	2	36	1.21
364916--364971	28	2.0	28	86	6	78	58	1	1	37	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365089--365148	30	2.0	30	96	0	111	55	10	10	25	1.64
365733--365761	3	9.7	3	100	0	58	34	0	0	65	0.93
367034--367068	18	1.9	18	88	0	52	45	0	2	51	1.16
367671--367741	19	3.7	20	72	11	67	47	1	0	50	1.09
367867--367909	19	2.2	20	83	4	52	41	2	2	53	1.26
368529--368566	3	12.7	3	94	0	67	34	2	0	63	1.09
371003--371030	3	9.3	3	100	0	56	35	0	0	64	0.94
371245--371297	27	2.0	27	84	0	70	43	1	3	50	1.30
371943--372001	28	2.0	28	83	6	73	38	1	0	59	1.08
372664--372705	14	3.1	14	86	6	68	40	2	9	47	1.49
373657--373709	23	2.3	23	93	3	88	49	7	16	26	1.73
374809--374847	19	2.0	20	90	5	62	74	0	7	17	1.05
377958--378005	21	2.3	21	82	7	53	41	14	2	41	1.57
378356--378415	18	3.4	18	72	11	52	45	1	1	51	1.21
380429--380921	144	3.4	141	81	10	574	27	22	14	35	1.93
380842--380993	72	2.1	72	91	2	243	28	28	9	32	1.89
380876--381168	72	4.1	72	67	14	183	27	24	15	33	1.95
380914--381249	144	2.3	144	97	0	636	27	23	15	33	1.95
380707--381137	216	2.0	211	89	5	654	27	25	13	33	1.93
380989--381209	72	3.1	72	63	17	186	27	20	17	33	1.95
389344--389413	26	2.7	26	88	0	104	25	14	28	31	1.95
389699--389741	13	3.3	13	73	0	50	0	4	20	74	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389795--389836	17	2.5	17	84	7	50	19	7	11	61	1.52
389845--389881	10	3.7	10	92	7	58	8	8	8	75	1.19
390095--390151	26	2.2	26	87	9	82	78	0	17	3	0.88
390082--390152	36	1.9	37	85	2	99	76	0	19	4	0.96
390102--390151	27	1.9	27	88	8	77	82	0	14	4	0.82
390377--390850	49	9.6	49	78	9	439	35	21	12	29	1.91
390436--390837	103	4.0	103	79	9	286	35	22	13	29	1.92
390377--390850	152	3.2	145	77	12	466	35	21	12	29	1.91
399895--399920	13	2.0	13	100	0	52	7	7	0	84	0.77
404101--404145	4	11.8	4	86	9	67	75	0	24	0	0.80
404099--404145	19	2.5	18	89	6	67	76	0	23	0	0.78
404098--404145	15	3.3	15	88	2	71	75	0	25	0	0.81
404101--404155	11	4.9	11	82	8	58	76	0	23	0	0.79
404102--404152	15	3.4	16	84	10	63	74	0	25	0	0.82
408846--408870	12	2.1	12	100	0	50	16	24	24	36	1.94
410620--410656	18	2.1	18	89	0	56	35	10	0	54	1.36
411512--411542	3	10.7	3	93	6	55	29	0	0	70	0.87
411602--411649	22	2.1	24	84	7	64	4	33	0	62	1.14
412791--412815	11	2.3	11	100	0	50	72	0	0	28	0.86
413661--413708	17	2.7	17	81	12	53	81	2	2	14	0.88
416578--416609	14	2.2	15	94	5	57	68	0	0	31	0.90
416576--416609	15	2.3	15	89	0	50	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
424794--425235	49	8.9	49	81	11	440	27	13	24	34	1.92
424798--425235	95	4.5	95	82	11	508	27	13	24	34	1.93
424798--425235	144	3.0	145	85	8	512	27	13	24	34	1.93
425104--425235	48	2.8	46	90	3	201	28	14	21	34	1.93
425422--425458	3	12.7	3	94	5	67	29	0	0	70	0.88
426685--427078	206	1.9	204	82	7	481	44	7	12	35	1.72
429098--429124	14	1.9	14	100	0	54	14	3	0	81	0.82
429816--429850	14	2.5	14	85	0	52	74	5	11	8	1.22
430152--430196	15	2.9	16	83	16	67	0	37	0	62	0.96
430720--430786	3	22.7	3	77	11	59	73	2	1	22	1.06
430714--430786	28	2.6	27	80	8	83	73	2	1	21	1.03
431110--431159	16	3.0	16	76	21	57	50	6	2	42	1.38
431144--431168	11	2.3	11	100	0	50	48	0	0	52	1.00
431143--431189	19	2.5	20	75	6	53	48	0	0	51	1.00
431782--431818	19	1.9	19	94	0	65	37	10	0	51	1.37
435245--435298	17	3.1	17	81	7	65	50	1	0	48	1.11
435464--435506	19	2.2	20	83	4	52	41	2	2	53	1.26
436130--436164	18	1.9	18	88	0	52	42	0	0	57	0.99
436757--436797	22	1.9	21	85	5	55	65	0	0	34	0.93
442583--442645	23	2.7	23	100	0	126	50	9	17	22	1.74
445978--446723	144	5.2	144	89	1	1068	26	22	15	34	1.95
451577--451625	14	3.7	14	73	13	50	73	0	26	0	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
453742--453827	9	9.9	9	80	12	81	81	1	17	0	0.76
453742--453822	23	3.5	23	81	5	92	83	1	14	0	0.70
453742--453837	35	2.8	35	87	7	126	80	1	17	1	0.83
453758--453814	1	57.0	1	78	0	51	87	0	12	0	0.54
454841--454966	41	3.1	41	92	4	211	26	15	22	35	1.94
454866--455310	41	10.5	43	80	8	339	24	15	20	39	1.91
454949--455307	43	8.4	42	79	7	199	23	15	20	39	1.91
454949--455311	84	4.3	83	78	9	304	23	15	20	39	1.91
455327--455357	16	1.9	16	100	0	62	90	6	0	3	0.55
455323--455356	8	4.2	8	85	14	52	88	8	0	2	0.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117