genome.fa.s101.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  6  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
557358--557455	41	2.5	39	77	12	101	46	6	10	36	1.63
557895--557957	29	2.1	30	80	13	69	63	4	7	23	1.41
557999--558023	11	2.3	11	100	0	50	52	0	0	48	1.00
563675--563831	34	4.6	34	84	0	170	32	15	17	33	1.92
571741--572185	189	2.4	185	82	4	516	34	13	11	40	1.80
572975--573035	12	4.9	13	76	9	56	21	8	31	39	1.82
573982--574043	21	2.9	21	76	13	56	30	0	8	61	1.25
575513--575582	35	2.0	35	85	0	95	35	18	11	34	1.87
575672--575913	64	3.8	62	72	12	156	34	15	15	35	1.89
575672--575873	64	3.2	62	71	12	160	35	13	16	35	1.88
575949--576420	245	1.9	243	81	5	569	37	14	13	33	1.86
584294--584379	34	2.5	36	75	11	90	43	8	15	33	1.76
585842--585887	24	2.0	24	87	12	69	4	8	2	84	0.83
587793--587861	36	1.9	36	100	0	138	44	20	11	23	1.83
596773--597086	144	2.2	144	88	2	461	34	16	23	25	1.95
602833--602868	16	2.2	17	90	5	56	55	5	8	30	1.52
604127--604187	18	3.1	18	75	20	59	31	16	4	47	1.68
604760--604798	20	2.1	18	85	9	51	33	5	0	61	1.18
605438--605472	18	1.9	18	88	0	52	57	0	0	42	0.99
606097--606139	19	2.2	20	83	4	52	53	2	2	41	1.26
606294--606333	18	2.3	17	86	4	53	52	0	0	47	1.00
606303--606353	15	3.1	15	78	21	50	49	0	1	49	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
608338--608370	17	1.9	17	88	11	50	66	15	3	15	1.37
610067--610172	31	3.4	32	83	3	112	26	0	27	45	1.60
610066--610120	15	3.7	15	82	0	65	16	1	30	50	1.55
610112--610175	15	4.1	15	75	16	60	31	0	23	45	1.53
610112--610172	17	3.8	16	79	14	72	32	0	24	42	1.55
610124--610175	15	3.4	15	77	15	61	34	0	21	44	1.52
612893--612917	13	1.9	13	100	0	50	16	24	32	28	1.96
613914--613943	3	9.7	3	92	7	51	66	0	0	33	0.92
614139--614471	46	6.9	47	81	9	357	35	23	13	27	1.92
614158--614468	145	2.1	145	86	5	434	36	23	12	27	1.91
614139--614476	99	3.5	96	83	6	398	35	23	13	27	1.92
621722--621948	113	2.0	113	98	0	436	25	13	22	38	1.91
626255--626297	16	2.6	16	79	17	52	6	2	9	81	0.95
627025--627055	12	2.6	12	94	0	53	22	0	3	74	0.96
627229--627273	20	2.3	20	81	7	58	33	2	0	64	1.06
627099--627480	208	1.8	209	83	7	508	34	12	6	46	1.68
628181--628231	21	2.4	22	83	6	61	11	19	5	62	1.49
628659--628699	3	13.7	3	90	10	66	65	0	0	34	0.93
628755--628799	12	3.8	12	84	0	63	42	2	2	53	1.25
628761--628808	24	2.0	24	84	8	62	50	4	0	45	1.21
630471--630505	18	1.9	18	88	0	52	57	0	0	42	0.99
631353--631392	17	2.4	17	78	0	53	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
633473--633569	49	2.0	49	97	0	185	46	2	8	43	1.45
633588--633627	20	1.9	22	85	10	57	42	2	0	55	1.13
634457--634502	22	2.2	22	88	7	69	43	0	6	50	1.28
636738--636859	6	19.5	6	72	20	83	19	1	2	76	0.99
636738--636835	17	5.9	17	68	20	64	18	1	2	78	0.90
636741--636863	50	2.5	50	79	11	121	21	1	2	74	1.01
637002--637027	7	3.7	7	100	0	52	11	0	0	88	0.52
637896--637978	5	16.8	5	71	16	50	14	3	2	79	0.97
637896--637978	6	13.5	6	70	22	57	14	3	2	79	0.97
637907--637978	15	5.2	14	75	15	62	13	2	2	80	0.93
637909--637978	21	3.7	20	76	21	78	14	2	2	80	0.95
637893--637982	28	3.2	28	81	12	96	13	5	2	78	1.01
640798--641082	21	12.8	21	77	11	264	36	9	16	37	1.81
640796--641054	46	5.7	45	82	5	287	36	10	16	36	1.82
640796--641082	67	4.3	66	81	9	298	36	9	16	37	1.81
641360--641421	16	3.9	16	75	12	56	37	12	9	40	1.77
641591--641689	41	2.4	41	81	1	101	22	17	17	43	1.88
641628--641746	41	2.9	40	82	2	157	18	16	19	45	1.86
641628--641886	137	1.9	137	82	1	331	20	15	18	44	1.86
641759--641970	81	2.6	83	84	5	261	22	14	18	45	1.85
641752--641995	41	5.9	41	80	5	242	22	14	18	43	1.87
642688--642736	20	2.5	19	76	6	53	24	2	0	73	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
648342--648792	49	8.9	50	77	7	326	31	12	15	40	1.84
649215--649267	22	2.4	22	81	9	63	79	5	11	3	1.03
650391--650450	23	2.6	24	84	7	81	68	3	0	28	1.05
652650--652687	12	3.1	12	88	3	58	63	0	2	34	1.09
662482--662803	72	4.5	72	89	0	484	34	13	27	24	1.92
664514--664552	18	2.2	18	85	0	51	38	2	0	58	1.12
665812--665852	17	2.4	17	83	0	55	53	0	0	46	1.00
667055--667080	3	8.7	3	100	0	52	30	0	0	69	0.89
667798--667892	5	17.8	5	73	20	52	16	5	2	75	1.08
667797--667893	6	15.8	6	70	21	60	16	5	2	76	1.06
667803--667866	23	2.6	23	82	12	65	17	7	1	73	1.14
667857--667912	21	2.7	21	78	10	62	21	3	1	73	1.08
670295--670512	81	2.7	80	82	2	267	26	18	12	42	1.86
671006--671043	14	2.9	14	88	7	53	36	2	0	60	1.11
671226--671275	22	2.3	22	86	6	66	40	0	0	60	0.97
671791--671835	21	2.1	21	83	0	54	44	4	2	48	1.35
672540--672592	15	3.6	14	75	20	54	32	0	0	67	0.91
672822--672870	17	2.9	17	87	0	71	32	0	0	67	0.91
674033--674057	12	2.1	12	100	0	50	76	8	0	16	1.02
674092--674233	59	2.4	59	89	3	216	34	13	8	43	1.74
674492--674777	58	4.9	58	85	6	391	34	12	6	46	1.68
674812--674878	15	4.4	14	72	20	55	77	1	7	13	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
674812--674929	18	6.5	17	72	18	64	72	2	4	20	1.13
674812--674877	17	4.2	16	70	18	59	77	1	7	13	1.05
674803--674889	22	4.0	21	68	19	52	73	1	8	17	1.13
674898--674928	4	7.5	4	92	7	53	77	0	0	22	0.77
674812--674928	14	8.9	13	69	21	59	72	2	4	20	1.13
675782--675830	21	2.5	20	81	15	57	59	2	8	30	1.38
675914--675948	3	11.7	3	93	0	61	65	0	2	31	1.07
675923--676063	50	2.7	50	75	13	117	70	2	4	22	1.15
675990--676063	25	2.9	25	75	16	80	77	1	2	18	0.97
675989--676063	6	12.2	6	78	16	82	77	1	2	18	0.96
675981--676063	31	2.7	30	83	7	103	75	1	3	19	1.01
675989--676063	13	6.1	12	78	17	82	77	1	2	18	0.96
676340--676382	8	5.4	8	84	15	54	0	2	9	88	0.60
676348--676382	10	3.5	10	88	11	54	0	0	8	91	0.42
676340--676382	18	2.3	18	88	11	61	0	2	9	88	0.60
676350--676380	16	1.9	16	100	0	62	0	0	9	90	0.46
676237--676448	116	1.8	115	83	7	277	25	16	14	42	1.86
676389--676711	41	8.1	41	87	8	463	37	23	16	22	1.93
677983--678016	10	3.3	10	91	4	50	0	17	0	82	0.67
681814--681838	12	2.1	12	100	0	50	76	8	0	16	1.02
681873--682084	60	3.6	58	86	6	318	35	14	7	42	1.73
682042--682128	44	2.0	44	97	0	165	40	14	6	37	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
681873--682091	59	3.7	59	85	4	316	35	13	7	43	1.72
681873--682091	119	1.8	118	93	0	375	35	13	7	43	1.72
681989--682185	103	1.9	103	89	4	308	37	13	8	41	1.75
681923--682244	162	2.0	162	90	4	506	35	13	7	44	1.71
681873--682304	221	2.0	220	90	4	683	35	13	6	43	1.71
682086--682313	59	3.9	58	85	7	293	33	13	6	46	1.69
682087--682313	117	1.9	118	85	9	313	33	13	6	46	1.69
682348--682414	15	4.4	14	72	20	55	77	1	7	13	1.04
682348--682472	18	7.2	17	69	19	62	73	3	4	19	1.13
682348--682413	17	4.2	16	70	18	59	77	1	7	13	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117