genome.fa.s101.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  15  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1549086--1549115	11	2.8	11	95	5	53	83	0	0	16	0.65
1549085--1549118	16	2.1	16	100	0	68	82	0	0	17	0.67
1549150--1549177	3	9.3	3	100	0	56	67	0	0	32	0.91
1549808--1549858	26	1.9	27	84	11	70	0	13	21	64	1.28
1550057--1550324	22	11.8	22	77	13	181	60	0	5	32	1.26
1550036--1550263	54	4.2	54	88	9	274	62	0	5	31	1.23
1550092--1550259	54	3.0	54	93	3	282	63	0	5	30	1.21
1550143--1550306	24	6.7	24	78	12	138	60	1	4	32	1.25
1550057--1550259	103	1.9	107	89	8	315	62	0	5	31	1.23
1550622--1550662	20	2.0	22	90	9	68	41	0	0	58	0.98
1550622--1550671	20	2.3	21	86	10	66	40	0	0	60	0.97
1550750--1550794	22	2.0	22	83	8	56	55	0	0	44	0.99
1554421--1554479	22	2.7	22	82	15	77	40	0	0	59	0.97
1554604--1554640	19	1.9	19	88	0	56	51	0	10	37	1.37
1555014--1555038	11	2.3	11	100	0	50	44	0	0	56	0.99
1555091--1555147	25	2.3	26	79	11	66	42	3	0	54	1.17
1555078--1555126	17	2.9	19	77	22	56	40	0	0	59	0.98
1555102--1555158	25	2.2	25	78	9	62	47	3	1	47	1.29
1555343--1555461	59	2.0	59	100	0	238	27	10	21	40	1.85
1556235--1556286	24	2.2	24	82	0	59	46	5	5	42	1.51
1556243--1556290	24	2.0	24	91	0	78	43	4	6	45	1.48
1560447--1560482	18	2.1	17	89	5	54	83	11	5	0	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1566953--1566983	13	2.4	13	88	0	53	83	0	9	6	0.79
1566627--1567134	199	2.5	193	83	11	600	45	7	12	34	1.70
1570924--1570967	20	2.0	23	87	12	67	72	0	27	0	0.85
1571359--1571401	1	43.0	1	80	0	50	90	0	4	4	0.54
1571344--1571406	11	4.9	13	81	13	53	84	0	12	3	0.75
1571342--1571401	10	6.1	10	80	5	61	86	0	10	3	0.67
1571341--1571409	15	4.5	16	78	8	63	82	0	14	2	0.78
1573069--1573111	19	2.3	19	84	15	54	20	4	0	74	1.00
1573367--1573403	19	1.9	19	89	10	58	75	10	0	13	1.04
1573368--1573417	19	2.6	19	83	3	55	80	6	4	10	1.02
1573711--1573748	20	1.9	20	94	0	67	57	10	2	28	1.45
1574225--1574253	3	9.7	3	100	0	58	65	0	0	34	0.93
1574436--1574697	40	6.6	40	86	2	307	43	19	9	26	1.82
1574476--1574724	40	6.3	40	85	1	162	44	19	9	26	1.82
1574476--1574756	80	3.6	80	81	6	242	43	19	9	26	1.82
1574845--1574972	40	3.3	39	84	4	168	43	21	11	23	1.85
1589004--1589288	21	12.8	21	75	11	210	37	9	15	37	1.80
1589002--1589264	46	5.8	46	78	5	236	36	10	15	37	1.82
1589002--1589264	67	3.9	66	77	12	223	36	10	15	37	1.82
1589002--1589176	92	1.9	92	89	2	271	38	9	14	38	1.78
1589565--1589616	16	3.3	16	76	12	54	30	13	11	44	1.79
1589576--1589643	31	2.2	31	84	5	84	36	8	13	41	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1589791--1589894	40	2.5	41	87	3	138	19	19	17	44	1.87
1589786--1590142	41	8.7	41	74	10	214	21	15	16	45	1.84
1589987--1590142	44	3.7	43	85	3	190	22	14	17	46	1.84
1595614--1595652	12	3.4	11	92	7	60	87	2	10	0	0.65
1595614--1595652	13	3.1	13	88	3	53	87	2	10	0	0.65
1598593--1598754	71	2.3	72	91	3	256	35	14	27	22	1.93
1601295--1601337	21	2.0	21	86	4	59	25	0	16	58	1.38
1601488--1601538	25	2.0	26	84	3	68	35	3	0	60	1.15
1602595--1602669	22	3.3	21	68	23	53	54	1	1	42	1.17
1607080--1607112	16	2.1	16	88	5	50	45	0	6	48	1.27
1609417--1609470	25	2.2	25	83	6	65	46	0	5	48	1.25
1610462--1610495	18	1.9	18	88	5	52	67	14	2	14	1.34
1611371--1611407	18	2.1	18	94	0	65	40	13	10	35	1.80
1613370--1613411	19	2.2	20	95	4	77	52	0	0	47	1.00
1613369--1613440	19	3.5	20	75	18	76	50	0	1	48	1.09
1617228--1617279	24	2.2	24	89	0	77	48	5	3	42	1.45
1621537--1621598	33	1.9	33	90	3	99	80	6	3	9	0.99
1621544--1621584	19	2.2	19	83	12	50	78	4	4	12	1.07
1621859--1622082	41	5.2	41	82	8	277	42	15	18	23	1.89
1621925--1622020	49	2.0	49	91	0	156	43	15	19	20	1.87
1621883--1622061	90	2.0	91	89	1	279	42	16	18	22	1.89
1622252--1622301	22	2.2	22	86	10	66	36	10	18	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1623781--1623837	14	3.9	14	77	11	60	7	14	0	78	0.94
1623825--1623850	11	2.4	11	100	0	52	0	15	0	84	0.62
1623813--1623861	20	2.5	20	90	6	73	2	14	2	81	0.87
1635728--1635808	7	11.6	7	70	12	51	76	6	2	14	1.08
1635725--1635808	33	2.4	35	84	9	111	77	5	2	14	1.06
1638033--1638082	12	4.0	13	76	23	54	0	26	0	74	0.83
1638247--1638290	22	1.9	22	82	17	54	43	13	22	20	1.87
1642935--1643536	144	4.2	143	87	3	859	34	15	22	27	1.94
1642935--1643536	288	2.1	288	91	1	974	34	15	22	27	1.94
1657462--1657543	7	11.6	7	68	12	51	75	6	3	14	1.13
1664689--1665289	144	4.2	143	84	5	798	34	16	22	26	1.95
1664689--1665289	287	2.1	288	89	2	913	34	16	22	26	1.95
1667980--1668019	16	2.5	15	80	11	53	40	2	0	57	1.12
1670473--1670505	16	2.1	16	88	11	50	27	0	3	69	1.03
1670547--1670590	19	2.3	18	82	17	54	36	0	2	61	1.09
1670622--1670681	24	2.4	25	81	13	61	21	5	3	70	1.22
1670654--1670698	18	2.4	18	81	3	54	22	8	4	64	1.40
1671135--1671170	11	3.3	11	88	0	54	13	22	27	36	1.92
1671532--1671562	16	1.9	16	93	0	53	16	0	3	80	0.83
1671616--1671682	11	6.5	10	84	8	64	13	4	1	80	0.93
1671616--1671697	5	15.8	5	71	18	53	14	4	1	79	0.96
1671615--1671697	6	13.7	6	74	15	64	14	4	1	79	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1671627--1671687	19	3.4	18	82	6	79	13	3	1	81	0.88
1671623--1671690	11	6.6	10	81	10	75	14	2	1	80	0.89
1671656--1671702	15	3.0	15	84	12	51	17	4	0	78	0.90
1671728--1672062	59	5.7	56	84	6	427	43	7	13	35	1.71
1671726--1672062	118	2.8	118	87	4	509	44	7	13	35	1.71
1671913--1672004	28	3.1	28	63	27	64	41	6	15	36	1.73
1672092--1672120	12	2.4	12	100	0	58	13	0	6	79	0.93
1674403--1674437	6	5.8	6	93	0	61	34	28	20	17	1.95
1674400--1674438	12	3.2	12	92	0	69	30	28	23	17	1.97
1677313--1677609	42	7.1	41	91	3	409	22	18	23	35	1.96
1677313--1677609	125	2.4	125	89	4	445	22	18	23	35	1.96
1677814--1677856	17	2.5	17	76	0	50	4	11	4	79	1.04
1677854--1677886	16	2.1	16	88	11	50	27	0	3	69	1.03
1677928--1677971	19	2.3	18	82	17	54	36	0	2	61	1.09
1678509--1678541	11	3.0	11	95	0	57	21	27	24	27	1.99
1678946--1678975	15	2.0	15	93	0	51	13	0	3	83	0.77
1678929--1678993	27	2.5	26	80	5	67	16	3	6	73	1.16
1679002--1679078	11	7.7	10	81	12	70	12	6	1	79	0.99
1679001--1679070	17	4.2	17	75	12	65	11	5	1	81	0.92
1679001--1679083	27	3.0	25	77	19	76	13	6	1	79	0.97
1679015--1679088	19	4.0	18	75	19	55	13	6	1	78	1.01
1679359--1679450	28	3.1	28	65	22	71	41	6	15	36	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1679100--1679565	60	7.9	58	86	4	569	43	7	13	35	1.72
1681455--1681510	17	3.5	17	77	15	57	32	1	0	66	1.03
1682784--1682826	19	2.2	20	87	4	61	51	2	2	44	1.27
1682993--1683042	17	2.9	17	76	5	57	50	0	2	48	1.12
1685226--1685266	21	2.0	21	85	0	55	46	2	7	43	1.44
1686167--1686767	236	2.6	235	81	2	706	33	8	12	45	1.73
1687154--1687276	61	2.0	61	98	0	237	39	4	10	44	1.60
1690053--1690628	205	2.8	201	78	7	545	34	13	11	40	1.81
1691500--1691589	12	7.4	12	70	21	55	30	0	6	63	1.20
1691508--1691589	16	4.5	19	70	25	61	30	0	6	63	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117