genome.fa.s101.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  38  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6729761--6729824	21	3.0	20	78	14	58	68	0	4	26	1.09
6730487--6730542	27	2.1	27	86	3	78	58	8	3	28	1.45
6730908--6730951	22	2.0	21	86	4	61	59	0	0	40	0.98
6741018--6741057	19	2.1	19	90	9	64	60	0	0	40	0.97
6741371--6741423	27	2.0	27	96	0	97	50	13	7	28	1.68
6741756--6741785	2	15.0	2	100	0	60	50	0	0	50	1.00
6749947--6750169	58	3.8	57	79	11	243	39	12	6	42	1.67
6750198--6750244	6	8.2	6	86	9	71	80	0	2	17	0.80
6750190--6750241	5	9.8	5	80	15	52	80	1	1	15	0.88
6750198--6750241	11	3.9	11	88	11	63	81	0	2	15	0.78
6750266--6750324	3	19.7	3	91	6	93	69	0	1	28	0.98
6750201--6750324	12	10.2	12	79	12	94	68	4	1	25	1.16
6750201--6750324	18	6.8	18	77	13	94	68	4	1	25	1.16
6750750--6750799	24	2.1	24	81	3	57	64	6	2	28	1.28
6750773--6750817	20	2.1	21	84	8	56	55	13	2	28	1.50
6751077--6751263	23	7.6	25	73	20	130	66	1	4	28	1.17
6751077--6751219	26	5.5	26	78	11	143	66	1	4	27	1.18
6751065--6751277	50	4.2	51	78	13	203	68	1	4	26	1.16
6751200--6751263	21	3.0	20	82	13	74	67	0	4	28	1.11
6751077--6751268	27	7.6	26	73	18	131	66	1	4	28	1.16
6751418--6751493	30	2.5	30	72	8	82	47	2	10	39	1.52
6751930--6751991	28	2.2	28	91	0	97	59	8	4	27	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6751930--6751998	28	2.5	28	87	0	84	59	7	7	26	1.50
6752359--6752402	22	2.0	21	86	4	61	59	0	0	40	0.98
6752610--6752642	17	2.0	17	88	5	50	27	0	0	72	0.85
6756153--6756178	13	2.0	13	100	0	52	46	0	15	38	1.46
6758557--6758604	2	24.5	2	79	12	55	47	4	2	45	1.33
6759504--6759548	23	2.0	21	83	8	54	46	4	2	46	1.35
6759545--6759595	24	2.1	24	82	13	61	47	0	3	49	1.20
6760570--6760643	32	2.3	32	81	4	87	32	2	32	32	1.72
6760701--6760751	25	2.0	26	84	7	68	35	9	17	37	1.83
6762798--6762837	22	1.9	21	85	10	55	45	0	2	52	1.14
6764959--6765025	22	3.1	21	77	8	73	49	0	0	50	1.00
6765004--6765035	15	2.1	15	94	0	55	50	3	0	46	1.17
6764996--6765043	17	2.9	17	81	15	64	50	4	0	45	1.21
6766591--6766678	6	15.3	6	79	11	60	72	2	0	25	0.96
6766572--6766671	12	8.5	12	70	17	52	69	4	0	27	1.07
6766593--6766701	23	4.8	23	70	23	79	70	2	0	25	1.06
6766604--6766678	28	2.6	28	87	2	105	72	2	0	25	0.98
6766592--6766716	33	3.9	31	73	17	87	71	3	0	24	1.06
6768951--6768979	10	3.0	10	95	5	51	68	0	0	31	0.89
6769613--6769652	18	2.2	18	86	0	53	80	2	5	12	0.98
6770137--6770191	19	2.9	19	81	10	60	78	9	1	10	1.05
6772075--6772115	21	2.0	21	85	0	55	78	0	4	17	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6781454--6781512	29	2.0	29	90	0	91	47	5	0	47	1.24
6781914--6781938	13	1.9	13	100	0	50	24	8	0	68	1.16
6788601--6788843	74	3.3	74	81	2	308	32	18	20	27	1.97
6793550--6793575	2	13.0	2	100	0	52	50	0	0	50	1.00
6794636--6794690	25	2.2	26	83	9	69	49	5	7	38	1.54
6798435--6798468	12	2.8	12	90	0	50	85	0	14	0	0.60
6798829--6798888	17	3.6	17	76	10	52	75	1	16	6	1.10
6799460--6799822	150	2.4	149	84	5	498	37	7	23	31	1.84
6800195--6800729	46	11.9	46	81	8	525	39	10	13	37	1.78
6800195--6800753	92	6.2	92	81	7	594	39	10	13	37	1.79
6800195--6800818	138	4.6	138	78	8	617	39	10	13	37	1.78
6800412--6800666	81	3.0	80	75	13	267	38	10	12	38	1.79
6800320--6800666	173	2.0	173	90	1	552	38	10	12	37	1.79
6800528--6800728	21	8.9	21	72	14	143	40	7	12	38	1.72
6800366--6800634	127	2.1	127	86	2	353	38	10	13	37	1.79
6801067--6801286	40	5.3	40	73	9	158	25	12	14	47	1.79
6801070--6801163	41	2.3	40	81	3	107	27	10	12	48	1.74
6801148--6801394	43	5.7	43	74	12	168	23	11	17	47	1.80
6801059--6801411	83	4.2	81	76	11	243	25	11	16	47	1.79
6801235--6801472	89	2.7	88	80	2	244	26	11	16	45	1.81
6801231--6801433	45	4.6	44	79	5	187	25	8	16	49	1.75
6801147--6801517	43	8.5	42	72	13	152	25	12	16	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6805296--6805330	17	2.1	17	94	0	61	25	11	14	48	1.77
6814035--6814078	21	2.2	20	87	4	61	25	18	15	40	1.90
6814043--6814084	21	2.0	21	86	4	59	23	16	14	45	1.84
6823692--6823725	17	2.0	17	100	0	68	35	0	23	41	1.55
6830162--6831221	356	3.0	355	88	2	1518	36	12	14	35	1.85
6830968--6832457	170	8.5	168	69	14	848	35	12	15	36	1.86
6830613--6831747	527	2.2	526	87	2	1638	36	12	14	35	1.84
6830147--6832289	712	3.0	700	78	9	1739	36	13	14	35	1.86
6830613--6831767	526	2.2	525	87	3	1660	36	12	14	35	1.85
6830287--6832102	882	2.1	882	88	1	2647	36	13	14	35	1.85
6831163--6832560	355	3.9	355	88	2	1973	35	13	15	35	1.87
6831197--6832560	711	1.9	712	89	1	2119	35	13	15	35	1.87
6834162--6834196	2	17.5	2	87	0	52	45	0	0	54	0.99
6857015--6857413	30	13.9	30	78	12	335	20	0	32	46	1.55
6857010--6857414	59	7.1	59	80	12	377	20	0	32	46	1.54
6857237--6857413	7	24.4	7	67	15	74	20	0	33	44	1.56
6857073--6857413	16	23.2	14	68	14	82	20	0	33	45	1.54
6857157--6857367	108	2.0	108	87	9	306	19	0	33	46	1.54
6857535--6857586	3	17.3	3	100	0	104	32	0	0	67	0.91
6857738--6857782	16	3.0	14	84	9	54	22	2	2	73	1.05
6857773--6857798	13	2.0	13	100	0	52	46	0	0	53	1.00
6858540--6858579	18	2.4	16	83	8	53	2	2	25	70	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6866344--6866380	2	18.5	2	100	0	74	51	0	48	0	1.00
6874773--6874823	19	2.7	19	83	16	70	49	0	0	50	1.00
6874776--6874820	21	2.2	21	92	7	76	51	0	0	48	1.00
6874812--6874867	12	4.4	13	76	17	55	64	1	0	33	1.04
6876983--6877022	16	2.4	16	87	4	53	15	2	7	75	1.14
6877079--6877166	6	14.2	6	70	24	51	77	6	0	15	0.97
6877062--6877103	20	2.2	20	87	8	61	73	9	0	16	1.08
6877082--6877166	26	3.4	24	82	10	100	77	7	0	15	0.97
6877122--6877161	20	2.0	20	85	5	53	77	7	0	15	0.98
6878045--6878082	3	12.7	3	94	0	67	63	0	2	34	1.09
6879503--6879527	2	12.5	2	100	0	50	48	0	0	52	1.00
6880285--6880315	14	2.2	14	94	0	53	48	9	6	35	1.62
6883879--6883911	14	2.3	15	89	5	50	12	6	0	81	0.85
6885043--6885067	13	1.9	13	100	0	50	68	0	0	32	0.90
6894023--6894095	29	2.5	29	79	2	92	54	2	8	34	1.44
6896170--6896235	29	2.2	29	83	2	78	53	1	1	43	1.19
6896317--6896364	17	2.6	19	77	12	55	43	4	0	52	1.20
6896800--6896837	2	19.0	2	100	0	76	0	50	0	50	1.00
6896837--6896864	2	14.0	2	100	0	56	50	0	0	50	1.00
6897646--6897671	2	13.0	2	100	0	52	50	0	0	50	1.00
6898347--6898396	22	2.3	22	92	0	82	62	6	10	22	1.48
6899918--6899944	4	6.8	4	100	0	54	25	0	25	48	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6909159--6909191	2	16.5	2	93	0	57	54	0	0	45	0.99
6909364--6909397	15	2.3	15	94	0	59	44	2	0	52	1.16
6910923--6910971	21	2.4	21	89	3	73	48	0	4	46	1.20
6913298--6913336	13	3.0	12	85	14	51	20	2	0	76	0.90
6913291--6913333	20	2.1	21	86	4	61	20	2	2	74	1.04
6918460--6918528	32	2.1	33	86	2	95	47	0	0	52	1.00
6918600--6918671	31	2.2	32	78	9	76	50	0	1	48	1.09
6918856--6918888	15	2.2	15	89	10	50	60	0	0	39	0.97
6923144--6923170	3	9.0	3	100	0	54	33	0	0	66	0.92
6928984--6929027	20	2.2	21	84	8	56	36	2	25	36	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117