genome.fa.s101.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  78  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13859502--13859574	22	3.3	22	84	0	92	28	13	24	32	1.94
13859415--13859534	57	2.1	58	84	4	163	37	11	15	35	1.84
13859896--13859944	18	2.7	18	87	0	62	36	16	22	24	1.94
13862010--13862066	26	2.2	26	83	0	69	7	3	10	78	1.05
13865904--13865955	21	2.3	21	75	21	52	55	7	9	26	1.59
13865911--13865962	18	2.6	19	75	19	52	57	7	11	23	1.59
13868364--13868701	145	2.3	145	82	5	396	41	11	13	34	1.80
13868428--13868739	145	2.2	144	81	4	351	39	13	13	33	1.83
13870875--13870910	18	2.0	18	100	0	72	38	22	16	22	1.93
13872639--13873188	256	2.1	258	82	5	646	43	10	7	38	1.68
13872465--13873263	130	6.1	130	76	9	603	42	10	7	38	1.69
13873721--13873756	3	12.3	3	94	5	65	69	0	0	30	0.89
13873848--13873873	13	2.0	13	100	0	52	76	0	0	23	0.78
13874014--13874074	19	3.2	19	68	25	56	54	24	3	18	1.58
13881804--13881849	18	2.5	19	83	13	53	23	4	15	56	1.57
13885672--13885735	8	8.2	8	74	6	60	79	3	15	1	0.93
13885698--13885731	13	2.4	14	90	9	52	82	0	14	2	0.79
13885674--13885733	22	2.7	21	80	12	57	81	3	13	1	0.89
13885674--13885734	30	2.0	32	83	6	81	80	3	14	1	0.92
13886359--13886414	15	3.7	15	78	4	51	76	1	19	1	0.96
13887708--13887746	14	2.6	15	84	12	53	79	0	12	7	0.93
13892692--13892855	22	7.1	24	71	7	117	32	7	13	46	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13892694--13892858	46	3.6	46	85	0	197	33	7	13	44	1.73
13892728--13892829	24	4.5	22	69	11	71	33	7	13	45	1.73
13893101--13893179	16	4.8	16	72	6	59	34	20	8	36	1.84
13893061--13893214	66	2.3	66	80	0	173	32	15	14	37	1.88
13894768--13894804	16	2.3	16	90	0	56	75	13	2	8	1.13
13895463--13895496	16	2.1	17	88	5	52	23	2	0	73	0.97
13900981--13901023	21	2.0	21	90	0	68	32	20	9	37	1.85
13903231--13903352	59	2.1	58	81	6	138	22	4	19	54	1.61
13903538--13904222	343	2.0	337	87	5	995	35	3	12	48	1.57
13907247--13907292	21	2.2	21	84	7	58	17	15	32	34	1.91
13908217--13908286	20	3.6	20	75	16	58	65	0	2	31	1.07
13908223--13908285	15	4.1	15	72	23	51	66	0	1	31	1.01
13908203--13908276	25	2.8	25	78	13	78	64	1	2	31	1.15
13908239--13908291	25	2.0	25	86	13	72	66	0	3	30	1.10
13908212--13908289	30	2.6	28	84	13	95	65	0	2	32	1.06
13908203--13908331	36	3.6	35	75	8	98	64	2	3	29	1.24
13908308--13908337	15	1.9	16	93	6	53	73	0	0	26	0.84
13915807--13915859	3	17.3	3	88	3	79	64	3	0	32	1.12
13916022--13916057	3	11.7	3	88	5	54	38	0	27	33	1.57
13916021--13916071	16	3.3	16	83	8	61	45	0	23	31	1.53
13916311--13916382	37	1.9	38	86	8	103	43	18	15	23	1.88
13921381--13921420	15	2.6	15	85	14	55	80	0	15	5	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13921409--13921454	9	5.2	9	82	12	51	84	0	6	8	0.77
13921411--13921454	17	2.6	18	85	7	65	84	0	6	9	0.79
13922930--13922972	3	14.7	3	85	4	61	69	0	0	30	0.88
13923072--13923140	3	21.7	3	76	16	52	68	0	4	27	1.09
13923960--13923992	16	2.0	17	88	5	50	42	3	0	54	1.15
13929050--13929110	29	2.1	29	84	3	77	60	19	3	16	1.49
13930780--13930825	10	4.7	10	81	5	58	52	13	13	21	1.73
13939127--13939157	13	2.5	12	94	5	53	77	6	6	9	1.12
13946051--13946087	18	2.1	18	94	0	65	29	21	10	37	1.88
13952450--13952512	22	2.9	22	82	0	72	44	11	7	36	1.69
13955226--13955539	127	2.5	125	83	5	373	28	14	8	47	1.74
13959894--13959941	21	2.2	23	81	11	64	27	10	2	60	1.41
13959918--13960231	126	2.5	126	84	3	382	29	13	7	48	1.71
13959918--13960302	126	3.0	124	77	7	362	29	15	8	47	1.74
13969816--13969849	17	2.0	17	100	0	68	47	23	5	23	1.73
13978581--13978620	21	1.9	21	84	0	53	15	30	15	40	1.87
13982050--13982103	26	2.0	28	82	13	69	48	9	11	31	1.70
13984686--13984728	20	2.2	20	83	4	52	46	4	4	44	1.45
13987559--13987603	20	2.3	20	85	14	60	15	15	15	53	1.74
13989958--13990021	31	2.0	32	82	8	78	45	14	14	26	1.82
13990369--13990415	15	3.1	15	74	20	53	48	0	0	51	1.00
13990721--13990751	14	2.2	14	94	0	53	45	3	0	51	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13994435--13994472	13	2.9	13	84	0	58	50	23	13	13	1.76
13994487--13994583	19	5.3	19	66	12	60	44	29	12	13	1.80
13995558--13995605	25	2.0	25	87	4	71	35	2	12	50	1.52
14001017--14001174	82	1.9	82	84	5	212	37	23	11	27	1.89
14002134--14002216	36	2.3	36	84	12	109	15	22	10	50	1.75
14002401--14002780	36	10.7	35	70	13	147	19	16	11	52	1.73
14002398--14002608	71	3.0	69	70	12	171	18	16	11	53	1.73
14002893--14002962	35	2.0	36	82	2	88	22	18	11	47	1.81
14003156--14003803	36	18.3	36	68	11	250	17	13	15	53	1.73
14003291--14003486	71	2.8	71	77	6	184	17	12	15	54	1.71
14003672--14003808	35	3.9	35	79	1	114	18	15	13	52	1.74
14003636--14003909	70	3.9	70	75	7	241	17	15	13	53	1.73
14002660--14003838	36	33.5	35	67	12	235	17	14	14	52	1.74
14003754--14003910	35	4.4	36	74	11	103	15	17	12	54	1.72
14003754--14003952	71	2.8	71	77	3	204	17	19	12	50	1.77
14004011--14004198	35	5.3	35	75	6	130	19	17	10	53	1.71
14004019--14004267	105	2.4	104	79	5	250	20	16	10	52	1.73
14004305--14004347	22	2.0	21	81	4	50	79	16	2	2	0.95
14007237--14007275	13	3.0	13	96	0	69	51	23	10	15	1.73
14007306--14007397	46	2.0	48	82	4	116	44	27	11	16	1.82
14008347--14008394	25	2.0	25	87	4	71	37	4	10	47	1.57
14009944--14009981	18	2.1	18	95	0	67	68	2	5	23	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14011115--14011140	12	2.2	12	100	0	52	42	15	0	42	1.47
14015418--14015453	14	2.5	15	90	4	56	66	16	0	16	1.25
14016272--14016321	4	12.8	4	82	4	66	22	4	2	72	1.12
14016272--14016355	35	2.4	35	82	5	91	19	5	5	69	1.31
14017003--14017049	19	2.4	20	78	7	60	61	2	36	0	1.08
14027309--14027618	43	7.2	43	80	1	282	24	13	16	45	1.83
14027319--14027618	85	3.5	86	79	2	316	25	13	16	44	1.85
14027881--14027926	4	11.8	4	86	4	67	23	4	0	71	1.03
14028379--14028415	19	1.9	19	89	10	58	29	5	5	59	1.42
14032414--14032480	23	2.7	25	80	19	79	65	1	1	31	1.10
14035554--14035649	44	2.2	44	83	3	124	44	12	6	36	1.67
14036404--14036428	10	2.5	10	100	0	50	0	8	0	92	0.40
14039587--14039629	19	2.2	20	87	4	61	55	2	2	39	1.25
14039694--14039758	23	2.8	24	83	4	87	4	21	1	72	1.11
14039846--14039875	14	2.1	14	100	0	60	33	0	6	60	1.23
14040046--14040106	25	2.4	25	78	5	70	4	19	0	75	0.98
14040545--14040640	49	2.0	49	93	0	165	51	14	7	27	1.69
14048618--14048680	2	32.5	2	87	6	94	53	0	0	46	1.00
14049007--14049047	6	6.7	6	86	5	55	14	2	2	80	0.92
14049656--14049777	56	2.2	55	89	2	181	27	7	12	52	1.65
14049939--14049977	19	2.1	19	90	0	60	30	7	10	51	1.64
14049954--14050007	24	2.2	24	84	9	74	37	3	5	53	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14052668--14052810	72	2.0	72	91	0	232	25	20	13	41	1.88
14053306--14053412	54	2.0	54	87	5	153	51	10	16	21	1.74
14053700--14053768	34	2.0	34	97	0	129	47	15	15	20	1.82
14054641--14054819	88	2.0	88	94	2	315	33	13	14	37	1.86
14055432--14055461	2	15.0	2	100	0	60	0	50	0	50	1.00
14056944--14056992	21	2.4	21	89	3	73	44	16	30	8	1.76
14061086--14061208	61	2.0	62	88	1	185	47	8	13	30	1.74
14062301--14062349	19	2.5	19	90	3	71	44	4	0	51	1.20
14064443--14064484	17	2.5	17	88	0	57	78	4	11	4	1.06
14065069--14065566	145	3.5	141	77	7	420	31	14	15	39	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117