genome.fa.s101.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  34  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5594919--5594982	20	3.3	19	76	8	67	79	6	1	12	0.98
5594907--5594982	38	2.0	38	86	0	107	78	5	1	14	0.98
5595184--5595227	13	3.6	12	82	11	54	79	2	2	15	0.93
5597765--5597900	68	2.0	67	97	1	254	37	5	5	50	1.51
5597879--5597903	13	1.9	13	100	0	50	32	0	0	68	0.90
5598694--5598720	2	13.5	2	100	0	54	51	0	0	48	1.00
5601180--5601440	141	1.9	141	81	3	328	36	18	12	33	1.88
5604209--5604284	12	6.3	12	77	19	61	80	0	18	1	0.79
5604206--5604272	6	10.8	6	82	17	84	82	0	17	0	0.68
5604207--5604286	30	2.6	31	86	9	112	80	0	18	1	0.79
5604208--5604286	7	11.7	7	78	10	69	81	0	17	1	0.77
5606197--5606246	25	2.0	25	100	0	100	64	0	12	24	1.27
5610836--5610861	2	13.0	2	100	0	52	50	0	0	50	1.00
5613877--5614033	52	3.0	51	85	3	188	26	24	8	39	1.85
5614058--5614099	11	3.8	11	83	0	57	50	28	0	21	1.49
5614967--5614992	10	2.6	10	100	0	52	15	0	7	76	0.99
5616566--5616636	16	4.7	16	74	10	53	54	2	0	42	1.14
5619564--5619589	2	13.0	2	100	0	52	50	0	0	50	1.00
5619751--5619784	8	4.2	8	92	0	59	85	0	0	14	0.60
5619754--5619814	9	6.8	9	76	10	54	81	3	1	13	0.88
5632853--5632895	14	2.8	15	82	13	52	60	6	2	30	1.35
5648707--5648776	8	8.4	8	77	14	70	12	1	4	81	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5648709--5648772	7	8.9	7	77	13	67	10	1	4	82	0.88
5648707--5648776	15	4.7	15	77	10	81	12	1	4	81	0.90
5650265--5650332	30	2.3	30	92	0	109	38	19	10	32	1.85
5659275--5659330	22	2.5	21	82	8	58	8	25	14	51	1.70
5661215--5661278	31	2.1	31	96	0	119	54	3	17	25	1.57
5663345--5663373	3	9.7	3	100	0	58	65	0	0	34	0.93
5664051--5664118	35	2.0	33	82	5	82	45	0	0	54	0.99
5664073--5664123	22	2.3	22	83	6	59	45	0	0	54	0.99
5664080--5664149	31	2.3	31	80	9	81	45	0	2	51	1.16
5664322--5664369	19	2.3	20	82	10	53	35	0	6	58	1.23
5664952--5664998	23	2.0	23	88	8	69	46	10	0	42	1.38
5670554--5670847	51	5.9	51	80	11	252	40	19	9	30	1.83
5670552--5671091	48	10.8	50	77	8	282	41	18	10	30	1.83
5679206--5679238	12	2.8	12	90	4	50	15	3	3	78	0.99
5680786--5680837	21	2.6	20	73	8	52	38	0	5	55	1.24
5682309--5682349	21	1.9	22	90	5	66	80	2	2	14	0.92
5682317--5682350	16	2.1	16	89	10	52	82	2	0	14	0.79
5687620--5687700	31	2.7	30	84	7	101	35	2	1	60	1.18
5687620--5687715	31	3.1	30	76	18	90	36	3	2	58	1.26
5688092--5688151	24	2.5	22	77	15	66	55	3	1	40	1.27
5694613--5694649	2	18.5	2	94	0	65	51	2	0	45	1.15
5710906--5710949	20	2.3	19	88	7	63	15	11	0	72	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5714925--5714951	11	2.5	11	100	0	54	33	0	0	66	0.92
5715204--5715236	2	16.5	2	100	0	66	51	0	0	48	1.00
5720561--5720603	3	14.3	3	100	0	86	34	0	0	65	0.93
5720977--5721019	21	2.0	21	86	8	61	34	0	0	65	0.93
5722679--5722716	15	2.7	14	88	11	60	44	0	0	55	0.99
5733829--5733917	30	2.9	31	78	5	101	35	11	4	48	1.59
5733983--5734032	21	2.6	19	79	14	57	66	2	0	32	1.03
5741987--5742094	29	3.7	30	70	19	79	54	0	0	43	1.12
5744772--5744818	21	2.2	22	85	11	62	57	0	8	34	1.29
5751832--5751894	24	2.5	25	79	5	65	69	14	14	1	1.26
5755501--5755533	2	16.5	2	100	0	66	48	0	0	51	1.00
5758361--5758476	56	2.1	56	90	0	178	39	16	16	27	1.90
5765123--5765167	20	2.2	20	88	0	63	13	2	2	82	0.86
5765123--5765168	7	6.7	7	82	5	58	13	2	2	82	0.85
5773881--5773955	21	3.6	21	71	7	64	17	22	30	29	1.97
5774521--5774548	13	2.2	13	100	0	56	28	35	21	14	1.92
5774736--5774866	65	2.0	65	96	0	244	24	38	12	24	1.91
5774864--5775016	76	2.0	76	92	0	252	22	29	26	22	1.99
5778546--5778670	63	2.0	63	90	0	196	19	19	33	28	1.96
5781689--5781742	22	2.4	24	81	12	69	50	0	0	50	1.00
5781705--5781776	35	2.0	34	82	15	83	55	0	0	44	0.99
5783001--5783030	2	15.0	2	100	0	60	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5783030--5783064	2	17.5	2	100	0	70	48	0	0	51	1.00
5783399--5783451	27	2.0	27	96	0	97	35	26	18	18	1.95
5788544--5788575	16	2.0	16	100	0	64	43	12	12	31	1.80
5788741--5788777	18	2.0	19	85	15	51	37	0	0	62	0.96
5790274--5790345	34	2.1	34	100	0	144	36	8	19	36	1.82
5798224--5798860	102	6.0	104	89	6	931	48	16	2	32	1.61
5798224--5798840	215	2.9	215	92	2	1035	48	16	2	32	1.60
5799697--5799749	13	4.2	12	75	17	54	35	1	0	62	1.06
5801223--5801266	19	2.4	18	81	7	52	13	29	18	38	1.89
5802259--5802311	27	2.0	27	92	0	88	3	33	32	30	1.76
5803456--5803517	28	2.2	28	80	8	74	41	0	3	54	1.16
5805380--5805487	30	3.7	29	76	11	103	42	3	0	53	1.18
5811810--5811842	15	2.2	15	89	10	50	24	0	15	60	1.35
5815045--5815130	43	2.0	43	100	0	172	60	2	9	27	1.40
5819397--5819432	13	2.8	13	86	0	54	30	0	0	69	0.89
5825702--5825754	24	2.2	25	86	3	72	39	3	0	56	1.17
5827070--5827108	14	2.8	14	84	11	53	38	0	2	58	1.12
5827925--5827981	22	2.6	22	78	13	73	61	0	3	35	1.13
5828051--5828105	15	4.3	13	72	21	53	50	0	0	49	1.00
5828081--5828113	9	3.3	10	84	16	50	48	0	0	51	1.00
5829077--5829106	5	6.0	5	92	0	51	36	20	3	40	1.69
5829134--5829176	22	1.9	23	85	4	61	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5829214--5829250	16	2.3	17	90	9	60	64	0	0	35	0.94
5829142--5829251	57	1.9	57	81	3	132	52	0	1	45	1.11
5834122--5834148	2	13.5	2	100	0	54	48	0	0	51	1.00
5836833--5836890	23	2.5	22	81	10	62	39	0	1	58	1.08
5845238--5845268	12	2.6	12	89	0	53	19	16	29	35	1.93
5845921--5845953	2	16.5	2	100	0	66	0	48	0	51	1.00
5848185--5848224	3	13.3	3	100	0	80	32	0	0	67	0.91
5848895--5848924	10	3.1	10	95	4	53	36	0	0	63	0.95
5848897--5848926	9	3.2	9	95	4	51	36	0	0	63	0.95
5858819--5859497	338	2.0	341	97	1	1303	28	15	13	42	1.84
5860750--5860780	3	10.3	3	92	0	53	64	32	0	3	1.09
5865713--5865750	20	1.9	20	88	0	58	28	5	10	55	1.56
5871230--5871275	3	15.3	3	100	0	92	67	0	0	32	0.91
5871236--5871310	24	3.1	24	84	9	82	61	1	0	37	1.05
5871611--5871641	14	2.2	14	94	0	53	77	16	6	0	0.97
5872281--5872307	9	3.0	9	100	0	54	22	0	0	77	0.76
5872555--5872584	15	2.0	15	93	0	51	56	0	0	43	0.99
5884110--5884148	18	2.2	18	85	0	51	76	2	15	5	1.06
5884666--5884774	36	3.0	35	77	7	110	18	22	11	47	1.80
5884944--5885212	134	2.0	134	84	2	353	24	18	11	45	1.83
5885222--5885478	139	1.8	139	87	1	381	24	18	11	45	1.82
5885818--5885853	3	12.0	3	100	0	72	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5886171--5886201	14	2.2	14	94	0	53	77	16	6	0	0.97
5889266--5889321	28	2.0	28	82	6	69	57	1	1	39	1.20
5889303--5889346	14	3.1	14	74	6	52	52	4	0	43	1.22
5890023--5890071	20	2.5	20	76	3	55	46	0	2	51	1.12
5892750--5892777	2	14.0	2	100	0	56	0	50	0	50	1.00
5892936--5892988	27	2.1	25	82	10	63	50	1	7	39	1.41
5897508--5897554	24	2.0	24	91	4	78	46	2	0	51	1.13
5897515--5897564	24	2.1	24	85	7	66	50	2	0	48	1.12
5897529--5897605	27	3.0	26	69	19	65	46	1	1	50	1.17
5902679--5902730	3	17.3	3	100	0	104	32	0	0	67	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117