genome.fa.s101.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  80  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14369578--14369627	23	2.2	23	79	10	59	48	12	16	24	1.79
14371325--14371356	10	3.2	10	100	0	64	0	40	18	40	1.51
14377153--14377180	2	14.0	2	100	0	56	50	0	0	50	1.00
14377377--14377693	169	1.9	170	80	4	381	39	5	6	48	1.52
14377955--14378003	20	2.5	20	86	0	62	51	0	8	40	1.32
14378050--14378120	30	2.4	31	83	7	92	40	9	12	36	1.77
14379705--14379757	26	2.1	26	86	10	74	69	3	3	22	1.20
14380057--14380090	15	2.3	15	90	10	52	52	5	2	38	1.41
14382259--14382288	15	2.1	14	93	6	51	46	13	13	26	1.80
14382642--14382675	16	2.1	16	88	0	50	44	2	0	52	1.16
14386533--14386587	25	2.4	23	75	18	62	54	3	3	38	1.36
14386536--14386583	25	2.0	24	88	12	71	52	4	2	41	1.32
14391095--14391132	20	2.0	20	89	5	60	39	15	10	34	1.82
14397719--14397789	14	4.9	14	82	16	74	70	1	1	26	1.04
14397720--14397789	3	23.7	3	80	16	76	70	1	1	27	1.05
14397734--14397789	26	2.2	25	87	9	78	69	1	1	26	1.08
14397881--14397909	10	2.7	11	89	10	51	68	6	6	17	1.34
14398190--14398261	30	2.5	27	80	13	81	44	25	4	26	1.72
14405364--14405404	21	1.9	21	85	5	55	75	7	7	9	1.18
14407152--14407222	26	2.7	27	76	6	74	33	15	16	33	1.91
14407330--14407377	18	2.7	18	90	0	78	22	22	14	39	1.91
14407691--14407926	128	1.8	128	80	3	278	35	16	14	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14410474--14410556	15	5.4	15	75	15	55	50	28	1	19	1.55
14418649--14418708	30	2.0	30	96	0	111	55	6	10	28	1.58
14419235--14419344	32	3.5	31	72	5	94	34	16	15	33	1.90
14419305--14419375	26	2.7	27	80	6	92	33	15	15	35	1.89
14419841--14420130	105	2.8	105	78	4	307	35	15	13	35	1.86
14420905--14420961	21	2.6	22	86	5	71	78	7	3	10	1.05
14421767--14421819	26	2.1	25	86	10	72	67	7	0	24	1.16
14421775--14421817	20	2.3	19	92	8	70	67	9	0	23	1.19
14422051--14422087	9	4.2	9	80	19	51	64	0	0	35	0.94
14422434--14422481	22	2.1	23	85	11	64	52	29	0	18	1.46
14422431--14422495	29	2.2	30	86	2	87	52	29	0	18	1.46
14424262--14424318	24	2.3	24	78	3	60	31	8	5	54	1.53
14426762--14426809	15	3.1	15	82	11	53	25	18	6	50	1.70
14428921--14430193	430	3.0	424	81	6	1361	42	12	18	26	1.86
14435707--14435738	13	2.5	13	94	0	55	28	3	0	68	1.04
14440944--14440980	3	12.3	3	88	11	58	29	0	0	70	0.88
14440944--14440982	19	2.1	18	95	4	69	30	0	0	69	0.89
14441249--14441274	9	2.9	9	100	0	52	30	0	11	57	1.34
14442727--14442761	14	2.5	14	85	0	52	37	2	0	60	1.12
14445923--14446003	15	5.4	15	81	8	85	25	17	0	56	1.41
14445925--14446011	45	1.9	45	100	0	174	25	17	0	57	1.40
14450981--14451035	22	2.5	22	75	18	62	29	3	5	61	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14453781--14453805	13	1.9	13	100	0	50	52	0	8	40	1.31
14455505--14455642	15	9.7	14	70	23	67	36	2	1	58	1.22
14455535--14455646	7	16.0	7	66	20	56	35	1	0	61	1.13
14455538--14455599	10	6.7	10	71	17	62	32	0	1	66	1.02
14455577--14455647	28	2.5	28	88	4	108	38	2	0	59	1.12
14457141--14457176	18	2.0	18	100	0	72	50	16	16	16	1.79
14464874--14464908	15	2.4	15	85	4	54	60	5	34	0	1.21
14476719--14476751	2	16.5	2	100	0	66	51	0	0	48	1.00
14478732--14478778	15	3.0	16	76	17	62	23	8	12	55	1.64
14480526--14480567	8	5.4	8	80	5	50	11	0	11	76	1.03
14480525--14480561	19	1.9	19	88	0	56	10	0	13	75	1.04
14484220--14484252	17	2.0	17	94	5	59	78	0	12	9	0.95
14485029--14485053	3	8.3	3	100	0	50	68	0	0	32	0.90
14485228--14485282	22	2.7	20	83	10	74	74	1	0	23	0.91
14489546--14489595	23	2.2	23	85	0	64	26	16	16	42	1.88
14489430--14489683	87	2.9	86	81	3	285	30	16	19	33	1.94
14489744--14489805	23	2.7	23	82	0	79	24	14	17	43	1.86
14489824--14489936	23	4.9	23	74	0	109	35	18	12	33	1.88
14490395--14490514	43	2.8	44	80	12	131	29	9	19	42	1.82
14490918--14490957	6	6.7	6	88	0	53	15	7	0	77	0.98
14492196--14492230	3	11.7	3	100	0	70	65	0	0	34	0.93
14492303--14492358	13	4.2	13	77	15	53	67	5	0	26	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14492296--14492371	34	2.2	35	83	6	93	68	3	1	26	1.15
14492318--14492371	15	3.3	15	74	20	54	70	3	1	24	1.13
14492574--14492636	29	2.2	28	81	13	74	61	6	1	30	1.30
14493056--14493097	10	4.3	10	81	3	50	71	0	11	16	1.14
14498239--14498506	145	1.8	146	81	5	337	42	9	13	34	1.76
14498980--14499012	5	7.0	5	93	6	52	21	0	0	78	0.75
14499091--14499430	105	3.2	105	79	4	373	35	14	15	34	1.88
14499735--14499775	18	2.3	18	86	0	55	41	7	21	29	1.80
14500277--14500339	27	2.3	28	86	2	92	26	7	19	46	1.77
14500277--14500349	28	2.7	27	82	2	92	28	6	19	45	1.76
14500649--14500701	3	17.7	3	96	0	97	30	0	1	67	1.01
14501948--14501985	19	2.0	19	89	0	58	2	2	7	86	0.74
14501949--14501991	19	2.2	20	83	4	52	4	2	9	83	0.87
14504902--14504948	21	2.2	21	85	7	60	17	29	2	51	1.57
14507968--14508129	83	2.0	83	93	0	279	40	15	4	38	1.69
14509243--14509360	29	3.9	29	78	14	123	35	27	15	22	1.94
14512209--14512256	18	2.8	17	77	22	55	62	2	2	33	1.18
14514433--14514465	15	2.1	16	88	5	50	36	0	6	57	1.23
14514547--14514609	19	3.5	18	79	10	67	28	1	6	63	1.28
14514584--14514638	15	3.7	15	74	13	51	38	1	3	56	1.28
14515785--14515846	20	3.0	20	71	19	65	48	22	6	22	1.73
14541846--14541880	18	1.9	18	88	0	52	2	5	14	77	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14547841--14547878	2	19.0	2	88	0	58	50	0	5	44	1.24
14549006--14549039	11	3.0	11	83	8	50	32	0	0	67	0.91
14550137--14550173	19	1.9	20	88	5	58	45	0	16	37	1.47
14550332--14550368	18	2.1	18	90	10	58	62	0	2	35	1.10
14557527--14558125	157	3.8	158	86	2	792	31	6	21	40	1.79
14558260--14558309	18	2.7	19	87	9	77	30	6	32	32	1.82
14559511--14559545	6	5.7	6	89	3	52	37	11	0	51	1.38
14559612--14559675	19	3.2	19	80	13	58	15	1	4	78	1.00
14563166--14563293	61	2.1	60	81	7	141	43	8	11	35	1.72
14563175--14563308	60	2.2	62	81	6	157	41	9	11	37	1.75
14563266--14563385	64	1.9	62	84	6	161	40	9	11	39	1.74
14565024--14565064	22	1.9	22	85	5	57	24	2	4	68	1.22
14566190--14566245	12	4.8	11	82	18	69	16	0	10	73	1.10
14566523--14566883	49	7.5	49	85	5	486	36	24	13	25	1.92
14566532--14566883	95	3.7	94	88	4	483	35	25	13	25	1.92
14566519--14566883	144	2.5	144	87	4	513	36	24	13	25	1.92
14566891--14567229	182	1.9	183	96	0	626	30	15	15	38	1.88
14578142--14578172	11	2.8	11	90	0	53	19	0	0	80	0.71
14579335--14579374	21	2.0	21	85	5	55	25	2	5	67	1.23
14580067--14580110	19	2.4	18	84	3	52	13	13	6	65	1.44
14580461--14580511	21	2.4	21	80	3	57	13	0	9	76	1.02
14580461--14580558	37	2.8	34	81	17	112	19	1	7	72	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14580498--14580557	24	2.4	25	83	8	77	21	1	5	71	1.14
14584414--14584483	20	3.4	21	82	5	90	40	10	7	42	1.66
14584851--14584900	17	2.9	18	75	19	52	64	8	10	18	1.48
14585209--14585235	9	3.0	9	100	0	54	22	33	0	44	1.53
14593391--14593599	103	2.0	103	100	0	418	34	16	9	38	1.82
14604377--14604644	97	2.8	96	83	3	342	44	10	8	37	1.69
14615818--14616052	41	5.7	41	76	8	187	25	11	15	46	1.80
14615823--14616058	42	5.7	42	75	14	163	25	10	16	47	1.78
14616429--14616466	14	2.7	15	88	8	53	21	5	0	73	1.02
14624496--14624603	55	2.0	55	84	0	144	34	7	28	29	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117