genome.fa.s101.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  50  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9229283--9229313	12	2.5	12	94	5	53	70	0	16	12	1.16
9231001--9231035	15	2.4	14	90	4	52	45	0	54	0	0.99
9232051--9232213	81	2.0	81	96	0	299	26	17	23	32	1.97
9234024--9234051	2	14.0	2	100	0	56	50	0	0	50	1.00
9234053--9234090	2	19.5	2	94	5	69	50	0	50	0	1.00
9236515--9236543	15	1.9	15	100	0	58	34	0	17	48	1.47
9241987--9242030	2	22.0	2	100	0	88	0	50	0	50	1.00
9250263--9250296	3	11.7	3	93	6	61	64	0	0	35	0.94
9250457--9250510	27	2.0	28	81	3	65	33	1	7	57	1.37
9250503--9250537	13	2.7	13	86	0	52	48	0	2	48	1.16
9250498--9250557	18	3.3	18	71	15	52	51	1	3	43	1.28
9251815--9251920	53	2.0	53	86	0	149	34	20	11	33	1.88
9259656--9259693	20	1.9	20	84	10	51	28	0	0	71	0.87
9261124--9261158	18	1.9	18	100	0	70	62	0	0	37	0.95
9261104--9261154	24	2.2	23	89	3	75	60	0	0	39	0.97
9261120--9261162	18	2.4	18	88	0	59	65	0	0	34	0.93
9261104--9261185	24	3.3	24	75	14	69	59	0	0	40	0.97
9268069--9268097	2	15.0	2	92	7	51	48	0	0	51	1.00
9274349--9274375	1	27.0	1	100	0	54	0	0	0	100	0.00
9278412--9278460	10	5.0	10	76	20	50	32	0	0	67	0.91
9283158--9283207	14	3.4	14	78	10	55	40	0	2	58	1.10
9283160--9283221	30	2.1	30	84	0	79	43	0	1	54	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9283194--9283245	22	2.5	22	90	6	81	48	0	0	51	1.00
9283194--9283252	22	2.7	22	84	7	77	45	0	0	54	0.99
9286765--9286800	12	2.8	13	83	8	56	25	0	38	36	1.56
9286802--9286938	60	2.2	61	80	10	154	21	2	32	43	1.65
9286897--9286960	16	4.0	16	82	8	85	17	0	37	45	1.48
9288446--9288477	17	1.9	16	93	6	55	34	0	0	65	0.93
9288455--9288503	21	2.4	20	82	3	62	46	0	0	53	1.00
9291814--9291847	2	17.0	2	100	0	68	50	0	0	50	1.00
9296256--9296281	1	26.0	1	100	0	52	0	0	0	100	0.00
9298694--9298718	3	8.3	3	100	0	50	32	0	0	68	0.90
9299776--9299805	12	2.5	12	94	0	51	10	0	10	80	0.92
9300484--9300513	13	2.3	13	94	0	51	10	0	10	80	0.92
9300497--9300573	31	2.5	31	82	16	88	9	0	15	75	1.04
9301420--9301475	3	18.7	3	96	0	103	35	0	30	33	1.58
9301474--9301517	3	15.0	3	95	4	81	65	0	0	34	0.93
9301474--9301513	20	2.0	20	100	0	80	65	0	0	35	0.93
9302267--9302311	23	2.0	23	86	0	63	37	24	13	24	1.91
9302276--9302350	23	3.3	23	77	5	73	29	17	25	28	1.97
9302668--9302730	26	2.4	26	83	0	81	36	15	12	34	1.86
9302781--9302977	88	2.2	88	80	9	209	30	12	15	41	1.84
9311133--9311169	7	5.4	7	87	12	51	40	0	2	56	1.13
9313262--9313314	2	27.5	2	92	7	92	50	0	49	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9313262--9313313	21	2.5	21	93	0	95	50	0	50	0	1.00
9327247--9327271	2	12.5	2	100	0	50	52	0	0	48	1.00
9333194--9333241	22	2.2	22	81	7	53	43	8	4	43	1.53
9333204--9333262	29	1.9	31	86	10	86	42	6	3	47	1.46
9333878--9333920	13	3.4	12	81	9	50	55	0	2	41	1.12
9336948--9336988	21	1.9	22	90	5	66	51	0	2	46	1.14
9336958--9336993	16	2.2	16	90	0	54	50	0	2	47	1.15
9337423--9337532	41	2.5	45	80	16	126	50	1	0	48	1.11
9337444--9337506	18	3.2	19	72	22	51	49	3	0	47	1.17
9337426--9337532	40	2.5	42	78	17	105	49	1	0	48	1.12
9339982--9340039	29	2.0	30	82	3	73	55	8	3	32	1.47
9340167--9340225	2	29.5	2	89	0	91	45	0	5	49	1.24
9344195--9344242	22	2.2	22	100	0	96	31	25	22	20	1.98
9350139--9350569	221	2.0	221	83	0	558	35	10	16	37	1.83
9360264--9360306	20	2.2	20	91	0	68	23	0	2	74	0.93
9360260--9360296	7	5.4	7	93	6	67	27	0	0	72	0.84
9361063--9361097	1	35.0	1	100	0	70	0	0	0	100	0.00
9361923--9362302	138	2.8	135	86	4	514	43	16	10	30	1.81
9362241--9362345	42	2.4	43	85	3	140	44	19	4	31	1.71
9362130--9362482	181	2.0	177	86	4	494	45	15	9	29	1.77
9362368--9362546	76	2.4	76	85	1	252	45	15	9	29	1.78
9362656--9362731	40	1.9	39	86	2	107	42	14	10	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9362986--9363038	27	2.0	27	88	7	81	33	15	11	39	1.83
9363409--9363496	44	2.0	44	95	0	158	45	12	12	29	1.79
9371341--9371373	13	2.5	13	90	0	57	39	6	15	39	1.72
9371807--9371944	8	17.9	8	68	19	53	22	0	26	50	1.49
9371824--9371943	15	7.8	16	72	18	78	20	0	27	51	1.48
9371808--9371904	31	3.2	29	75	16	81	22	0	24	52	1.47
9371845--9371949	46	2.3	45	82	9	115	21	0	26	51	1.48
9371861--9371949	15	5.8	15	75	9	81	21	0	25	52	1.47
9373520--9373623	35	3.0	35	72	10	104	48	11	22	18	1.80
9373875--9374074	70	2.9	69	76	9	190	47	13	22	18	1.82
9374172--9374414	70	3.5	69	75	6	206	48	10	19	22	1.79
9374170--9374583	210	2.0	211	80	2	465	46	9	21	21	1.80
9374615--9374681	35	1.9	35	84	0	89	52	10	14	22	1.72
9375156--9375204	25	2.0	25	84	8	64	4	2	12	81	0.91
9375723--9375785	22	2.8	23	70	4	65	25	17	30	26	1.97
9378191--9378244	10	5.1	11	74	14	51	3	7	7	81	0.97
9382608--9382882	8	35.1	8	66	9	70	19	4	28	47	1.68
9382614--9382714	33	3.1	32	69	9	80	15	5	28	49	1.68
9382738--9382832	39	2.5	39	85	1	120	23	3	27	46	1.67
9382803--9382852	15	3.3	15	80	8	57	16	0	30	54	1.42
9382825--9382934	23	4.9	23	73	15	77	20	2	29	47	1.64
9382857--9382910	7	7.4	7	79	8	63	24	1	27	46	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9386320--9386383	18	3.6	18	72	4	58	26	9	18	45	1.80
9389002--9389098	47	2.0	48	84	5	126	43	7	15	34	1.74
9389783--9389808	5	5.2	5	100	0	52	0	19	0	80	0.71
9390061--9390098	16	2.4	16	86	8	51	23	5	0	71	1.07
9391415--9391455	12	3.0	14	86	10	50	9	9	2	78	1.06
9391427--9391455	14	2.0	15	93	6	51	13	6	3	75	1.13
9395209--9395623	211	2.0	206	80	7	471	34	10	7	47	1.66
9399206--9399253	24	2.0	24	84	8	62	8	6	14	70	1.31
9400151--9400197	21	2.2	21	85	7	60	12	4	8	74	1.19
9400180--9400230	15	3.5	15	83	2	59	7	1	5	84	0.85
9400180--9400234	25	2.3	24	87	9	78	7	1	7	83	0.87
9400522--9400686	84	2.0	85	80	6	192	38	14	16	30	1.88
9400743--9400898	49	3.2	49	80	7	163	39	12	16	31	1.86
9401500--9401529	12	2.5	12	100	0	60	43	23	16	16	1.87
9403508--9403548	21	2.0	21	95	0	73	34	19	12	34	1.89
9404658--9404695	19	2.0	19	89	0	58	47	13	7	31	1.71
9407363--9407507	75	1.9	75	87	2	211	25	15	15	43	1.86
9410102--9410141	21	1.9	21	84	0	53	55	12	7	25	1.63
9410225--9410418	59	3.3	60	75	9	175	41	13	11	32	1.81
9410361--9410464	37	2.7	38	88	2	147	43	12	15	28	1.83
9410471--9410543	21	3.5	21	81	3	76	31	16	19	32	1.94
9410508--9410552	21	2.1	21	87	0	63	35	17	11	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9419599--9419625	14	1.9	14	100	0	54	44	11	0	44	1.39
9420346--9420385	22	1.9	22	85	10	57	62	2	0	35	1.09
9422203--9422238	16	2.2	16	90	0	54	47	2	0	50	1.15
9425198--9425240	2	21.5	2	90	0	68	51	44	0	4	1.22
9427569--9427606	3	12.7	3	94	0	67	63	0	0	36	0.95
9427572--9427639	6	11.3	6	96	0	55	48	0	0	51	1.00
9427599--9427639	3	13.7	3	94	0	73	36	0	0	63	0.95
9431503--9431572	3	23.3	3	97	0	131	67	1	0	31	1.00
9431606--9431680	25	2.9	26	70	4	71	33	21	24	21	1.97
9431876--9432393	118	4.4	118	82	1	522	42	16	22	18	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117