genome.fa.s101.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  26  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3446518--3446552	16	2.2	16	89	0	52	45	0	11	42	1.40
3446998--3447060	19	3.4	19	77	16	69	74	1	1	22	0.99
3453413--3453438	7	3.7	7	100	0	52	0	11	0	88	0.52
3462247--3462299	22	2.5	22	84	3	72	32	20	11	35	1.88
3462173--3462943	188	4.1	189	84	7	906	34	16	14	35	1.89
3462611--3462652	22	1.9	22	90	0	66	35	23	14	26	1.93
3462925--3463215	40	7.4	39	72	15	183	27	14	16	41	1.87
3463145--3463253	40	2.7	40	75	2	101	30	10	19	40	1.84
3463463--3463495	3	11.0	3	100	0	66	33	0	0	66	0.92
3465249--3465286	13	2.8	14	92	8	69	60	0	5	34	1.19
3467337--3467362	7	3.7	7	100	0	52	88	0	0	11	0.52
3467477--3467516	19	2.1	19	90	0	62	12	5	2	80	0.98
3467509--3467581	10	7.8	10	73	22	52	28	0	2	68	1.03
3467534--3467589	25	2.2	25	83	6	67	42	0	0	57	0.99
3476256--3476845	188	3.1	187	85	4	769	33	16	14	35	1.89
3476513--3476554	22	1.9	22	90	0	66	35	19	14	30	1.91
3476827--3477004	40	4.4	39	81	6	187	28	14	16	41	1.87
3476830--3477037	40	5.2	40	76	8	163	28	14	16	39	1.88
3476827--3477105	80	3.5	81	74	9	222	26	14	16	41	1.87
3476893--3477098	74	2.7	75	76	13	206	25	14	18	40	1.89
3477363--3477407	3	15.0	3	100	0	90	33	0	0	66	0.92
3477970--3478001	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3479500--3479535	14	2.6	13	87	12	54	13	0	5	80	0.88
3479499--3479536	19	2.0	19	85	10	51	15	0	7	76	1.01
3480353--3480386	3	11.3	3	93	0	59	64	2	0	32	1.08
3485563--3485612	16	3.2	16	77	5	50	82	4	12	2	0.90
3486185--3486224	15	2.7	15	88	0	62	17	25	17	40	1.91
3486254--3486315	26	2.4	26	81	5	72	37	24	12	25	1.91
3486762--3487372	188	3.3	189	86	2	833	33	16	14	35	1.89
3487348--3487677	40	8.2	40	71	16	184	30	11	13	43	1.80
3487452--3487593	74	1.9	74	84	2	187	27	14	16	41	1.87
3492383--3492770	136	2.7	141	74	9	385	33	13	10	42	1.78
3492570--3492619	27	1.9	27	88	8	77	32	14	4	50	1.61
3494302--3494348	3	15.7	3	86	8	69	61	2	0	36	1.08
3495104--3495141	18	2.1	19	85	5	51	28	2	7	60	1.38
3501013--3501083	36	2.0	36	88	5	108	19	21	21	38	1.94
3502755--3502796	20	2.0	21	86	4	59	38	0	7	54	1.28
3503836--3504452	176	3.5	177	91	1	976	29	18	17	34	1.94
3511159--3511267	50	2.2	51	90	5	168	52	22	6	18	1.68
3511780--3511833	26	2.1	25	83	10	65	37	0	1	61	1.07
3511879--3511929	24	2.1	24	82	13	61	66	1	0	31	1.03
3515043--3515123	29	2.8	29	82	1	90	46	6	2	44	1.41
3519937--3519975	19	2.1	19	100	0	78	35	5	33	25	1.78
3522102--3522151	26	1.9	26	87	0	73	36	0	4	60	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3523405--3523445	14	2.7	15	79	20	50	48	0	2	48	1.14
3525124--3525216	37	2.5	37	72	6	91	59	1	1	38	1.12
3533160--3533222	31	2.0	33	84	12	87	57	1	3	38	1.24
3534462--3534488	14	1.9	14	100	0	54	33	0	14	51	1.43
3543406--3543480	30	2.5	31	80	4	89	53	4	4	38	1.39
3546582--3546912	179	1.8	180	81	2	414	43	5	7	43	1.55
3546890--3546930	21	1.9	22	85	14	59	36	0	2	60	1.10
3545509--3546950	180	8.0	179	71	10	788	42	7	7	41	1.62
3550084--3551525	181	8.0	181	75	6	1027	42	7	7	42	1.61
3550102--3551467	535	2.5	533	79	7	1393	42	7	7	42	1.61
3553556--3553631	30	2.5	31	80	2	82	40	2	3	52	1.34
3557092--3557125	2	17.5	2	87	6	52	52	0	2	44	1.16
3562560--3562586	14	1.9	14	100	0	54	51	14	0	33	1.43
3563824--3563886	31	2.0	33	84	12	87	38	3	1	57	1.24
3564468--3564535	31	2.2	32	84	12	88	47	0	0	52	1.00
3564485--3564551	24	2.7	25	77	13	66	47	1	0	50	1.10
3571359--3571389	10	3.1	10	90	0	53	77	0	3	19	0.90
3571655--3571704	22	2.3	23	79	10	59	54	2	0	44	1.11
3571671--3571729	28	2.1	28	81	6	66	54	3	1	40	1.27
3573561--3573607	15	3.1	15	84	3	58	44	0	0	55	0.99
3577049--3577087	19	2.1	19	100	0	78	25	33	5	35	1.78
3578458--3578533	25	3.1	24	68	15	66	52	15	7	23	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3581299--3581338	20	2.0	20	85	9	55	45	0	2	52	1.14
3581908--3581988	30	2.7	30	82	1	92	44	2	6	46	1.41
3585196--3585249	26	2.1	25	83	10	65	61	1	0	37	1.07
3585757--3585863	50	2.1	51	93	5	182	16	5	24	53	1.65
3592532--3593203	175	3.9	176	84	8	890	34	17	18	29	1.94
3594283--3594898	177	3.5	177	90	2	956	29	18	17	34	1.94
3601584--3601687	49	2.1	51	91	5	169	51	24	5	18	1.67
3602197--3602250	26	2.1	25	83	10	65	37	0	1	61	1.07
3602293--3602345	23	2.3	24	78	15	67	66	1	0	32	1.03
3608899--3608974	25	3.1	24	68	15	66	23	7	15	52	1.69
3610346--3610384	19	2.1	19	100	0	78	35	5	33	25	1.78
3612505--3612554	26	1.9	26	87	0	73	36	0	4	60	1.16
3613800--3613840	14	2.7	15	79	20	50	48	0	2	48	1.14
3617037--3617109	34	2.1	34	82	2	83	17	2	6	72	1.19
3617506--3617753	69	3.5	70	78	13	242	41	15	25	17	1.89
3617650--3618782	35	31.5	35	67	13	408	42	12	23	21	1.87
3617708--3617791	43	2.0	43	90	0	132	39	11	27	21	1.88
3617751--3618803	73	14.7	73	86	4	1426	42	11	23	22	1.86
3617751--3618803	361	2.9	360	87	5	1515	42	11	23	22	1.86
3617751--3618801	288	3.7	287	89	1	1594	42	11	23	22	1.86
3619845--3619893	16	2.9	17	80	20	66	10	2	6	81	0.94
3619824--3619893	9	7.8	9	85	10	65	10	4	4	81	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3619823--3619868	10	4.7	10	89	5	67	8	4	2	84	0.83
3631612--3631665	23	2.3	23	81	6	65	55	7	1	35	1.39
3631612--3631660	22	2.1	24	85	7	66	51	8	2	38	1.43
3632634--3632704	24	3.0	23	82	17	83	9	1	11	77	1.06
3636579--3636645	31	2.2	31	94	0	116	37	26	13	22	1.91
3645036--3645105	38	1.9	35	91	8	113	14	21	8	55	1.65
3654934--3654987	25	2.2	25	96	0	99	51	7	9	31	1.61
3654977--3655015	20	2.0	20	100	0	78	69	10	0	20	1.17
3661031--3661097	25	2.8	24	81	4	64	19	40	10	29	1.85
3661054--3661124	25	2.8	25	89	0	106	19	39	8	32	1.82
3662593--3662741	52	2.9	50	77	11	165	28	16	6	48	1.71
3663113--3663173	31	2.0	31	96	0	113	50	18	1	29	1.56
3664536--3664576	21	1.9	22	90	5	66	46	9	21	21	1.80
3665233--3666131	323	2.8	320	84	3	1077	28	23	15	32	1.95
3667058--3667241	93	2.0	93	97	0	350	40	13	8	36	1.76
3677061--3677143	11	7.7	10	70	16	51	80	1	12	6	0.94
3677062--3677145	19	4.1	20	73	18	64	79	1	13	5	0.96
3678588--3678687	44	2.2	44	80	3	101	23	19	16	42	1.89
3678665--3678768	43	2.4	44	85	4	140	29	7	12	50	1.68
3678697--3679089	168	2.4	167	80	5	427	25	10	16	48	1.78
3678682--3679096	81	5.0	83	75	7	284	26	10	15	47	1.78
3678602--3679163	44	13.2	43	72	10	239	25	11	16	45	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3679632--3679670	19	2.1	19	85	9	53	38	5	7	48	1.54
3679881--3679914	17	2.0	18	88	11	54	79	0	20	0	0.73
3680186--3680226	4	10.2	4	84	10	57	24	2	2	70	1.11
3680186--3680226	17	2.6	16	88	7	57	24	2	2	70	1.11
3683545--3683585	21	1.9	22	90	5	66	46	9	21	21	1.80
3692962--3693038	3	25.7	3	89	10	122	31	0	2	66	1.05
3693857--3693899	17	2.5	17	84	3	50	60	6	2	30	1.35
3695164--3695205	8	5.1	8	88	5	57	66	2	0	30	1.04
3695164--3695205	17	2.6	16	88	3	57	66	2	0	30	1.04
3695288--3695765	216	2.2	218	81	7	542	56	7	9	26	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117