genome.fa.s101.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  107  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18666699--18668006	723	1.8	718	88	2	1841	25	23	24	26	2.00
18668273--18668326	26	2.1	26	96	0	99	27	22	24	25	2.00
18669081--18669133	26	2.0	26	92	0	88	28	18	24	28	1.98
18672544--18672596	26	2.0	26	96	0	97	26	18	26	28	1.98
18673445--18673497	26	2.0	26	96	0	97	26	18	26	28	1.98
18668373--18675273	901	7.9	872	83	6	7941	25	23	24	25	2.00
18676631--18679426	674	4.0	680	83	7	3116	26	22	24	26	2.00
18676631--18679426	727	4.0	680	83	7	3123	26	22	24	26	2.00
18677299--18679584	723	3.2	716	85	4	3045	26	23	24	25	2.00
18679608--18679658	26	2.0	26	92	0	84	25	17	27	29	1.98
18680496--18680548	26	2.0	26	92	0	88	26	18	24	30	1.98
18678882--18681415	893	2.8	888	87	3	3609	25	23	24	26	2.00
18680679--18682818	707	3.0	701	87	4	3020	26	23	23	26	2.00
18682800--18682852	26	2.0	26	85	0	70	30	16	22	30	1.96
18685711--18685762	26	2.0	26	100	0	104	26	19	26	26	1.99
18683198--18686659	902	3.9	904	86	3	4819	25	23	24	25	2.00
18687336--18687388	26	2.0	26	88	0	79	28	20	24	26	1.99
18689992--18690042	26	2.0	26	96	0	93	27	17	25	29	1.98
18693585--18693637	26	2.0	26	96	0	97	26	18	26	28	1.98
18694468--18694520	26	2.0	26	96	0	97	26	18	26	28	1.98
18686672--18707922	900	23.8	898	84	5	25157	25	23	24	25	2.00
18696255--18696307	26	2.0	26	85	7	72	30	16	22	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18698878--18698930	26	2.0	26	88	0	79	30	20	22	26	1.98
18700667--18700719	26	2.0	26	92	0	88	28	18	26	26	1.98
18701568--18701620	26	2.0	26	88	0	79	30	18	22	28	1.98
18702466--18702518	26	2.0	26	89	7	81	28	20	22	28	1.99
18703344--18703396	26	2.0	26	92	0	88	24	18	28	28	1.98
18705236--18705286	26	2.0	26	88	0	75	27	15	29	27	1.96
18705044--18705447	185	2.2	185	88	1	596	22	25	28	24	1.99
18706999--18707049	26	2.0	26	96	0	93	29	19	25	25	1.99
18710336--18710388	26	2.0	26	96	0	97	26	18	26	28	1.98
18708171--18710759	842	3.0	849	82	6	2696	24	23	26	25	2.00
18710756--18710813	26	2.2	25	81	9	62	22	10	10	56	1.62
18712496--18712546	26	2.0	26	96	0	93	29	15	25	29	1.96
18713395--18713445	26	2.0	26	96	0	93	27	17	27	27	1.98
18710841--18718839	899	9.1	892	84	5	9273	25	24	24	25	2.00
18716016--18716068	26	2.0	26	100	0	106	26	16	26	30	1.97
18716898--18716950	26	2.0	26	92	0	88	30	20	22	26	1.98
18715138--18718796	893	4.1	896	84	5	4628	25	24	24	25	2.00
18718679--18718730	26	2.0	26	88	0	77	26	15	28	28	1.96
18718975--18719026	26	2.0	26	92	7	88	26	15	26	30	1.96
18718555--18719136	296	2.0	296	86	0	815	23	28	27	20	1.99
18719873--18719924	26	2.0	26	92	0	86	26	15	28	28	1.96
18718850--18723449	893	5.2	892	83	6	5645	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18720663--18720695	11	3.0	11	100	0	66	18	36	27	18	1.94
18721646--18721698	26	2.0	26	92	7	90	26	22	24	26	2.00
18722690--18724894	704	3.1	707	88	2	3162	26	23	23	26	2.00
18724984--18728681	705	5.1	698	74	13	2810	26	23	23	27	2.00
18729550--18729602	26	2.0	26	96	0	97	26	22	24	26	2.00
18727908--18730470	895	2.9	890	85	4	3420	25	23	24	26	2.00
18731143--18731195	26	2.0	26	96	0	97	26	18	26	28	1.98
18732051--18732103	26	2.0	26	89	7	81	28	16	24	30	1.97
18730417--18735841	908	6.2	896	78	10	5161	25	24	24	25	2.00
18732949--18733001	26	2.0	26	88	0	79	32	20	20	26	1.98
18733319--18733370	25	2.0	26	85	3	70	21	13	13	51	1.74
18733788--18733845	26	2.3	25	85	8	82	25	20	24	29	1.99
18735544--18735596	26	2.0	26	85	0	70	28	18	24	28	1.98
18735636--18736010	170	2.2	170	94	1	655	22	27	32	17	1.96
18736619--18736671	26	2.0	26	96	0	97	28	20	24	26	1.99
18737527--18737605	26	3.0	26	96	0	140	29	18	24	27	1.98
18739355--18739423	26	2.7	26	97	0	129	30	20	23	26	1.98
18740264--18740326	26	2.4	26	94	0	108	26	22	22	28	1.99
18741179--18741231	26	2.0	26	88	0	79	30	20	20	28	1.98
18735805--18743954	903	9.0	893	84	5	9417	25	23	24	25	2.00
18742984--18743062	26	3.0	26	90	7	117	31	16	21	30	1.95
18743902--18743977	26	2.9	26	96	0	143	30	19	23	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18744695--18744747	26	2.0	26	88	0	79	28	16	24	30	1.97
18744721--18745148	159	2.7	158	79	7	418	24	27	27	19	1.99
18745735--18745787	26	2.0	26	92	0	88	24	18	28	28	1.98
18746637--18746689	26	2.0	26	96	0	97	28	20	24	26	1.99
18747512--18747564	26	2.0	26	100	0	106	26	20	26	26	1.99
18748398--18748450	26	2.0	26	88	0	79	26	20	24	28	1.99
18735878--18761569	878	28.7	879	80	9	24590	25	24	24	25	2.00
18750145--18750198	26	2.1	26	96	0	99	29	22	25	22	1.99
18751050--18751102	26	2.0	26	96	0	97	26	22	24	26	2.00
18735805--18743954	897	9.0	888	84	6	8669	25	23	24	25	2.00
18751939--18751989	26	2.0	26	96	0	93	27	17	25	29	1.98
18752837--18752889	26	2.0	26	85	0	70	26	16	24	32	1.97
18755496--18755548	26	2.0	26	89	7	81	32	18	22	26	1.97
18756572--18756623	26	2.0	26	96	0	95	26	19	25	28	1.98
18757270--18757320	26	2.0	26	96	0	93	29	15	25	29	1.96
18758148--18758198	26	2.0	26	96	0	93	27	17	27	27	1.98
18759900--18759952	26	2.0	26	88	0	79	28	18	24	28	1.98
18759036--18761569	881	2.8	878	87	4	3538	25	24	24	25	2.00
18760791--18760843	26	2.0	26	92	0	88	28	18	24	28	1.98
18762315--18762367	26	2.0	26	96	0	97	28	20	24	26	1.99
18763223--18763275	26	2.0	26	88	0	79	28	15	26	30	1.96
18763249--18763597	159	2.2	159	89	0	536	19	28	30	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18764178--18764222	20	2.2	20	84	0	63	40	20	24	15	1.91
18764583--18764648	11	6.5	10	83	11	55	13	4	1	80	0.94
18764582--18764653	18	4.1	16	79	12	63	13	4	1	80	0.92
18764599--18764653	29	2.0	26	86	10	74	12	3	1	81	0.89
18764594--18764653	18	3.4	18	86	2	86	13	3	1	81	0.89
18764590--18764656	11	6.6	10	78	13	66	14	2	1	80	0.90
18764671--18764970	58	4.9	60	82	7	374	45	9	12	32	1.73
18764673--18764970	121	2.5	120	91	2	472	45	9	12	32	1.74
18775307--18775376	36	1.9	36	82	5	88	74	2	11	11	1.18
18775317--18775380	17	3.8	16	77	18	60	75	3	9	12	1.16
18775316--18775380	8	7.8	8	71	21	53	73	3	10	12	1.20
18776395--18776681	41	7.2	40	85	10	367	22	17	24	35	1.95
18776395--18776681	83	3.6	82	85	10	432	22	17	24	35	1.95
18776497--18776641	74	2.0	74	97	0	272	22	15	27	33	1.95
18776455--18776681	116	2.0	116	94	1	402	21	17	26	34	1.95
18776571--18776681	42	2.7	41	97	1	204	20	18	26	35	1.95
18776689--18776754	17	3.9	17	76	13	73	84	13	0	1	0.68
18776689--18776755	14	4.9	13	77	13	64	85	13	0	1	0.68
18776689--18776755	27	2.4	27	82	7	82	85	13	0	1	0.68
18776698--18776748	7	7.6	7	77	16	54	84	13	0	1	0.71
18776918--18776959	17	2.6	16	80	3	57	4	9	4	80	0.99
18776954--18777015	28	2.2	27	78	13	63	24	1	4	69	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18777020--18777070	15	3.4	16	79	10	56	35	0	5	58	1.22
18777035--18777085	19	2.7	20	74	17	54	33	0	1	64	1.05
18777603--18777641	20	2.0	20	85	10	53	43	23	15	17	1.87
18778041--18778103	6	10.8	6	75	13	51	11	4	1	82	0.88
18778041--18778094	17	3.3	17	76	7	58	11	5	1	81	0.93
18778049--18778111	11	5.6	10	75	20	54	12	3	1	82	0.86
18778053--18778108	17	3.4	16	78	9	60	10	3	1	83	0.83
18778047--18778123	32	2.3	32	82	12	86	11	6	2	79	1.02
18778126--18778423	60	5.0	59	86	8	399	46	7	13	32	1.71
18779292--18779340	25	1.9	26	95	4	91	30	20	24	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117