genome.fa.s101.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  109  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18915018--18915070	26	2.0	26	100	0	106	26	26	20	26	1.99
18915906--18915958	26	2.0	26	92	0	88	26	22	22	28	1.99
18916809--18916862	26	2.1	26	89	0	81	22	22	24	31	1.98
18918565--18918617	26	2.0	26	92	0	88	30	26	16	26	1.97
18920316--18920368	26	2.0	26	92	0	88	26	24	18	30	1.98
18910511--18926717	893	18.0	889	79	8	15063	25	24	24	25	2.00
18921220--18921272	26	2.0	26	96	0	97	28	26	18	26	1.98
18921998--18922286	158	1.8	159	84	2	393	20	29	29	20	1.98
18922260--18922312	26	2.0	26	88	0	79	30	24	16	28	1.97
18923161--18923213	26	2.0	26	92	7	90	30	26	16	26	1.97
18924961--18925013	26	2.0	26	86	13	74	30	22	16	30	1.96
18922078--18926716	896	5.2	902	85	2	6007	25	24	24	25	2.00
18927493--18927545	26	2.0	26	88	0	79	30	26	18	24	1.98
18928397--18928463	26	2.6	26	92	0	107	25	22	17	34	1.96
18926799--18930113	902	3.6	901	84	5	4197	26	24	23	25	2.00
18929515--18930739	629	1.9	630	88	1	1857	29	23	20	26	1.99
18930852--18930902	26	2.0	26	84	0	66	27	19	21	31	1.97
18935419--18935448	12	2.4	12	94	5	51	53	26	10	10	1.66
18935777--18935828	26	2.0	26	100	0	104	26	26	19	26	1.99
18937549--18937601	26	2.0	26	92	0	88	28	22	20	28	1.99
18938449--18938499	26	2.0	26	96	0	93	27	23	21	27	1.99
18935446--18953593	898	20.4	897	86	4	23412	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18938912--18938970	27	2.2	27	78	3	66	57	8	10	23	1.59
18940206--18940261	26	2.2	26	96	0	103	30	25	17	26	1.97
18941092--18941143	26	2.0	26	92	0	86	28	25	17	28	1.97
18942892--18942942	26	2.0	26	96	0	93	27	23	21	27	1.99
18944655--18944707	26	2.0	26	92	0	88	26	26	20	26	1.99
18945556--18945608	26	2.0	26	96	0	97	28	26	18	26	1.98
18939332--18953593	901	16.0	902	86	3	18644	25	24	24	25	2.00
18949124--18949174	26	2.0	26	96	0	93	25	27	17	29	1.98
18950882--18950934	26	2.0	26	92	0	88	26	24	22	26	2.00
18951781--18951833	26	2.0	26	96	0	97	28	24	20	26	1.99
18954210--18954262	26	2.0	26	92	0	88	30	26	16	26	1.97
18953707--18960615	897	7.8	893	85	5	8480	26	24	23	25	2.00
18956004--18956056	26	2.0	26	92	0	88	26	20	22	30	1.98
18957678--18957730	26	2.0	26	96	0	97	28	24	20	26	1.99
18958578--18958627	26	1.9	26	91	0	82	28	22	22	28	1.99
18959470--18959522	26	2.0	26	92	0	88	33	24	15	26	1.95
18962908--18962960	26	2.0	26	92	0	88	30	26	18	24	1.98
18962683--18963152	244	1.9	245	85	2	658	19	22	33	23	1.97
18964754--18964809	26	2.2	26	96	0	103	26	25	19	28	1.99
18965644--18965699	26	2.2	26	86	0	76	32	21	16	30	1.95
18966540--18966592	26	2.0	26	92	0	88	28	24	20	26	1.99
18962908--18968329	899	6.0	895	85	4	6883	25	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18969872--18969924	26	2.0	26	88	0	79	28	22	18	30	1.98
18970448--18970499	26	2.0	26	92	0	86	30	23	17	28	1.97
18971312--18971364	26	2.0	26	92	0	88	26	26	20	26	1.99
18972447--18972499	26	2.0	26	92	0	88	30	24	18	26	1.98
18973350--18973408	26	2.3	26	82	11	68	27	25	22	25	2.00
18976002--18976051	25	2.0	25	92	0	82	30	26	14	30	1.94
18976904--18976956	26	2.0	26	100	0	106	26	22	20	30	1.98
18977802--18977854	25	2.1	26	89	3	81	32	22	15	30	1.94
18975135--18982145	903	7.9	901	85	3	8906	25	24	24	25	2.00
18978708--18978759	26	2.0	26	96	0	95	28	26	17	26	1.97
18982012--18982036	12	2.1	12	100	0	50	0	64	28	8	1.22
18987831--18990785	878	3.3	887	84	7	3722	25	25	24	24	2.00
18992231--18992283	26	2.0	26	96	0	97	28	22	18	30	1.98
18993114--18993166	26	2.0	26	96	0	97	28	26	18	26	1.98
18994013--18994065	26	2.0	26	92	0	88	26	24	22	26	2.00
18995797--18995849	26	2.0	26	100	0	106	26	26	20	26	1.99
18991365--18996457	892	5.7	885	86	3	6649	25	24	24	25	2.00
18998857--18998935	26	3.0	26	96	0	140	27	25	18	27	1.98
19000693--19000745	26	2.0	26	96	0	97	28	26	18	26	1.98
18997091--19006628	897	10.6	904	85	5	11807	26	24	23	25	2.00
19001600--19001675	26	2.9	26	90	0	125	28	23	17	30	1.97
19002487--19002539	26	2.0	26	89	7	81	28	22	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19003382--19003434	26	2.0	26	96	0	97	28	24	20	26	1.99
19006067--19006119	26	2.0	26	92	0	88	28	28	18	24	1.98
19006904--19006956	26	2.0	26	92	0	88	26	26	18	28	1.98
19008664--19008716	26	2.0	26	92	0	88	24	26	18	30	1.98
19009546--19009598	26	2.0	26	96	0	97	26	24	20	28	1.99
19010446--19010498	26	2.0	26	96	0	97	26	24	20	28	1.99
18997091--19022607	898	28.6	888	81	7	25348	25	24	23	25	2.00
19012227--19012280	26	2.1	26	89	0	81	24	24	22	29	1.99
19013977--19014029	26	2.0	26	92	0	88	28	24	18	28	1.98
19014891--19014943	26	2.0	26	92	0	88	28	22	20	28	1.99
19015794--19015846	26	2.0	26	92	0	88	28	24	18	28	1.98
19016676--19016728	26	2.0	26	85	0	70	26	26	16	30	1.97
19014676--19030697	903	17.6	882	75	10	10823	25	24	23	25	2.00
19017574--19017626	26	2.0	26	96	0	97	26	24	20	28	1.99
19018478--19018530	26	2.0	26	92	0	88	28	24	18	28	1.98
19019364--19019413	26	1.9	26	100	0	100	24	26	22	28	1.99
19020241--19020293	26	2.0	26	92	0	88	28	24	18	28	1.98
19021132--19021187	26	2.2	25	93	6	96	26	26	19	26	1.99
19022019--19022071	26	2.0	26	86	13	74	30	22	16	30	1.96
19022332--19022941	307	2.0	307	90	0	961	35	17	18	29	1.93
19024120--19024170	26	2.0	26	84	0	66	31	23	13	31	1.93
19025026--19025076	26	2.0	26	96	0	93	29	27	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19025910--19025962	26	2.0	26	96	0	97	26	24	20	28	1.99
19026803--19026853	26	2.0	26	92	0	84	27	27	17	27	1.98
19027704--19027756	26	2.0	26	92	0	88	28	24	18	28	1.98
19029503--19029553	26	2.0	26	92	0	84	31	25	15	27	1.96
19031990--19032042	26	2.0	26	92	0	88	26	26	20	26	1.99
19030701--19037686	900	7.8	899	85	3	8669	26	25	23	25	2.00
19033779--19033831	26	2.0	26	89	7	81	28	28	16	26	1.97
19034679--19034731	26	2.0	26	96	0	97	26	24	20	28	1.99
19036465--19036517	26	2.0	26	85	0	70	30	22	18	28	1.98
19037357--19037409	26	2.0	26	96	0	97	33	24	15	26	1.95
19038970--19039022	26	2.0	26	88	0	79	28	22	24	24	2.00
19039866--19039918	26	2.0	26	88	0	79	28	26	20	24	1.99
19037691--19044142	895	7.2	888	82	8	7146	26	24	23	25	2.00
19042561--19042613	26	2.0	26	96	0	97	26	24	22	26	2.00
19041827--19044170	891	2.6	890	87	3	3194	26	24	23	25	2.00
19043452--19043504	26	2.0	26	96	0	97	28	26	18	26	1.98
19043633--19044755	606	1.9	605	87	3	1641	29	23	20	26	1.99
19048990--19049178	86	2.2	89	87	8	273	37	23	16	22	1.93
19049040--19049178	44	3.3	41	88	9	199	36	24	16	22	1.94
19050187--19050253	9	7.8	9	75	20	63	10	13	0	76	1.03
19050179--19050250	8	8.6	8	71	24	51	9	13	0	76	1.02
19060561--19060831	57	4.9	56	91	5	442	35	11	7	46	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19060561--19060831	109	2.4	112	95	3	476	35	11	7	46	1.67
19060863--19060993	10	13.4	10	67	23	66	76	3	3	17	1.05
19060855--19060993	22	6.5	21	66	17	88	76	2	2	17	1.02
19060949--19060991	6	7.3	6	82	12	54	83	0	0	16	0.64
19060855--19061009	15	10.1	15	69	16	88	77	3	2	16	1.01
19060855--19061011	24	6.5	24	68	10	88	77	3	2	16	1.01
19061879--19062227	159	2.2	159	86	0	491	22	29	27	20	1.98
19063104--19063156	26	2.0	26	100	0	106	26	26	20	26	1.99
19064867--19064917	26	2.0	26	96	0	93	29	27	13	29	1.94
19064001--19074044	870	11.2	881	82	8	10665	25	24	24	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117