genome.fa.s101.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  29  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4174566--4174611	24	1.9	24	86	0	65	50	8	6	34	1.59
4178107--4178178	32	2.2	33	82	2	83	44	4	0	51	1.20
4181257--4181300	22	2.0	22	95	0	79	31	11	13	43	1.80
4181448--4181507	25	2.5	25	86	5	79	13	23	18	45	1.84
4185151--4185194	22	2.0	22	95	0	79	31	11	13	43	1.80
4193732--4193799	27	2.5	27	79	9	68	57	4	0	38	1.19
4194484--4194541	24	2.4	24	79	0	62	37	0	0	62	0.96
4194504--4194570	13	5.1	13	75	16	50	29	1	1	67	1.09
4194503--4194552	5	10.0	5	77	16	50	34	0	0	66	0.92
4194503--4194552	11	5.0	10	79	16	50	34	0	0	66	0.92
4194503--4194555	24	2.2	23	80	9	61	33	0	0	66	0.92
4195268--4195317	18	2.7	19	88	11	77	48	0	0	52	1.00
4195311--4195365	12	4.7	12	78	17	62	65	0	0	34	0.93
4195286--4195369	18	4.8	18	72	16	61	59	0	0	40	0.97
4195314--4195369	16	3.3	16	72	18	51	64	0	0	35	0.94
4195308--4195350	22	2.0	22	100	0	86	65	0	0	34	0.93
4196602--4196640	19	2.1	19	85	9	53	69	0	0	30	0.89
4203128--4203170	21	2.1	20	91	4	68	60	0	0	39	0.97
4203149--4203257	32	3.3	34	74	18	88	48	0	0	51	1.00
4203173--4203244	30	2.4	29	81	9	83	47	0	0	52	1.00
4203706--4203872	76	2.2	74	86	5	221	48	2	7	41	1.46
4204043--4204090	20	2.5	19	83	6	53	54	2	0	43	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4204156--4204191	13	2.6	14	86	8	56	63	0	0	36	0.94
4207133--4207157	10	2.5	10	100	0	50	8	12	0	80	0.92
4209415--4209450	18	1.9	19	88	5	56	80	0	0	19	0.71
4209445--4209482	18	2.1	19	85	5	51	42	0	0	57	0.98
4209518--4209561	22	1.9	24	86	9	65	52	0	0	47	1.00
4210200--4210267	32	2.1	32	83	0	82	52	2	7	36	1.44
4218255--4218298	22	1.9	24	81	9	56	43	9	0	47	1.35
4218290--4218314	2	12.5	2	100	0	50	52	0	0	48	1.00
4219663--4219742	40	2.0	40	95	0	142	45	7	27	20	1.78
4220015--4220118	52	2.0	52	86	3	147	45	5	20	28	1.74
4220306--4220372	35	1.9	35	87	0	98	14	4	37	43	1.66
4221129--4221844	365	2.0	366	89	1	1116	31	9	25	34	1.87
4222690--4222714	12	2.1	12	100	0	50	24	0	24	52	1.48
4222757--4222903	70	2.1	70	97	0	276	30	4	23	40	1.75
4225608--4225653	21	2.2	21	84	0	56	36	0	4	58	1.18
4232714--4232768	24	2.3	24	81	6	67	50	0	1	47	1.11
4232711--4232752	17	2.5	17	80	7	50	47	0	0	52	1.00
4232728--4232786	6	9.7	6	76	10	50	47	0	3	49	1.18
4232940--4232969	9	3.2	9	95	4	51	63	0	0	36	0.95
4232942--4232971	10	3.1	10	95	4	53	63	0	0	36	0.95
4234468--4234501	2	17.0	2	100	0	68	50	0	0	50	1.00
4237981--4238039	6	9.7	6	80	10	59	45	0	3	50	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4240459--4240488	10	3.1	10	95	4	53	63	0	0	36	0.95
4246066--4246123	30	2.0	30	86	10	84	67	1	1	29	1.11
4246074--4246123	15	3.3	15	74	2	55	68	2	2	28	1.12
4246708--4246763	28	2.0	28	86	6	78	58	8	5	26	1.50
4247335--4247369	2	17.5	2	87	0	52	48	0	2	48	1.16
4250214--4250327	42	2.7	42	88	0	174	37	18	18	25	1.93
4253441--4253486	20	2.3	20	76	0	56	52	8	4	34	1.52
4255905--4255955	26	2.0	25	85	7	68	43	0	5	50	1.26
4257314--4257362	21	2.5	21	87	9	68	36	0	0	63	0.95
4268151--4268189	12	3.0	13	88	7	53	56	0	0	43	0.99
4268281--4268397	17	6.8	17	70	20	75	54	0	1	43	1.10
4268302--4268342	14	2.6	16	81	11	50	56	0	0	43	0.99
4268302--4268402	34	3.1	32	78	16	100	55	0	1	42	1.11
4268425--4268631	22	9.0	23	69	20	80	42	1	2	53	1.24
4268458--4268495	13	2.9	13	81	14	51	42	0	7	50	1.31
4268474--4268668	18	11.8	17	68	24	107	43	1	1	54	1.16
4268356--4268669	148	2.1	151	77	13	319	44	1	2	51	1.23
4268584--4268631	22	2.2	22	96	0	87	41	0	2	56	1.11
4268555--4268657	52	2.0	53	83	12	133	41	0	1	55	1.17
4268615--4268680	31	2.0	31	82	8	78	43	0	3	53	1.16
4268768--4268810	22	1.9	23	85	4	61	37	4	6	51	1.50
4268768--4268816	22	2.2	23	81	3	55	38	8	6	46	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4272104--4272260	52	3.0	51	86	5	199	26	24	8	40	1.83
4272295--4272327	11	3.0	11	90	0	57	48	27	0	24	1.51
4272590--4272685	25	3.9	25	81	1	113	20	33	8	37	1.83
4277572--4277614	21	2.0	21	100	0	86	13	4	13	67	1.38
4277601--4277630	15	2.0	15	93	0	51	3	3	0	93	0.42
4278034--4278085	21	2.5	21	90	6	79	50	0	0	50	1.00
4278034--4278085	22	2.5	22	93	6	90	50	0	0	50	1.00
4278058--4278127	30	2.3	32	80	7	83	55	1	0	42	1.08
4279131--4279178	25	2.0	24	87	4	69	52	2	0	45	1.12
4279092--4279168	30	2.5	32	79	12	90	50	0	0	49	1.00
4279714--4279800	28	3.2	28	73	22	87	64	0	3	32	1.10
4281078--4281103	2	13.0	2	100	0	52	50	0	0	50	1.00
4290518--4290547	4	7.5	4	100	0	60	26	0	23	50	1.50
4292362--4292403	14	3.0	14	86	6	50	33	0	9	57	1.31
4299782--4299813	16	2.0	16	100	0	64	43	18	0	37	1.51
4302571--4302605	18	1.9	18	94	0	61	42	0	0	57	0.99
4303362--4303399	3	12.7	3	88	0	58	63	0	5	31	1.17
4306452--4306481	6	5.0	6	91	0	51	70	0	0	30	0.88
4307079--4307129	24	2.1	24	85	0	66	23	3	7	64	1.37
4308767--4308791	2	12.5	2	100	0	50	52	0	0	48	1.00
4309220--4309256	7	5.3	7	90	9	58	72	0	0	27	0.84
4309227--4309256	15	2.0	15	100	0	60	73	0	0	26	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4312834--4312885	20	2.5	21	81	9	61	30	1	0	67	1.02
4313376--4313464	42	2.1	42	95	0	160	34	7	15	41	1.76
4313613--4313642	15	2.0	15	93	0	51	30	0	16	53	1.44
4315318--4315362	23	1.9	24	86	4	65	62	0	2	35	1.08
4315940--4315996	11	4.9	11	73	12	51	63	3	1	31	1.22
4316028--4316103	30	2.5	31	81	6	95	55	2	0	42	1.14
4316030--4316107	31	2.6	29	78	11	86	56	3	0	39	1.18
4316048--4316115	31	2.2	31	81	7	75	48	5	0	45	1.26
4317882--4317913	16	2.0	16	93	0	55	40	6	15	37	1.73
4322956--4323009	4	13.5	4	88	0	72	20	3	3	72	1.16
4330808--4330926	38	3.3	37	76	12	97	52	0	0	47	1.06
4330864--4330926	31	2.0	31	85	11	85	50	0	0	49	1.00
4335377--4335695	15	19.4	16	69	23	136	47	0	1	49	1.17
4335392--4335695	17	17.3	18	67	24	127	47	0	1	50	1.17
4335373--4335497	49	2.7	47	80	8	130	49	0	0	49	1.06
4335422--4335560	20	6.8	20	81	14	142	54	0	0	44	1.05
4335382--4335695	18	16.9	20	68	23	99	47	0	1	49	1.17
4335636--4335696	16	3.6	16	75	25	63	39	0	3	57	1.15
4335855--4335979	53	2.3	54	98	1	243	57	15	1	25	1.47
4345139--4345183	22	2.0	22	87	8	65	55	0	0	44	0.99
4351187--4351262	36	2.1	36	92	0	125	23	15	27	32	1.95
4362654--4362706	18	3.1	18	78	8	65	45	13	3	37	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4365399--4365476	29	2.6	31	84	12	108	46	3	11	38	1.59
4365411--4365478	29	2.3	29	94	0	118	45	2	13	38	1.58
4365386--4365493	29	3.7	29	81	4	94	50	4	8	37	1.53
4367338--4367440	32	3.1	32	78	10	91	52	9	6	31	1.60
4369700--4369753	21	2.5	21	77	14	56	35	1	1	61	1.18
4372678--4372714	10	3.9	9	86	13	56	54	2	0	43	1.14
4374025--4374052	3	9.3	3	100	0	56	32	0	0	67	0.91
4374418--4374454	3	12.3	3	100	0	74	32	0	0	67	0.91
4375299--4375329	2	15.5	2	93	0	53	3	0	45	51	1.17
4378018--4378157	69	2.0	69	97	0	262	28	27	10	34	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117