genome.fa.s101.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  112  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19371707--19371758	26	2.0	26	88	3	79	28	23	19	28	1.98
19371733--19374663	718	4.1	718	84	5	3693	27	24	22	25	2.00
19374781--19374831	26	2.0	26	88	0	75	27	23	17	31	1.97
19376397--19376449	26	2.0	26	96	0	97	28	26	18	26	1.98
19377289--19377341	26	2.0	26	96	0	97	28	26	18	26	1.98
19378191--19378243	26	2.0	26	92	0	88	30	26	16	26	1.97
19375524--19378975	892	3.9	897	88	3	4899	25	24	23	25	2.00
19380661--19380713	26	2.0	26	89	7	81	26	26	18	28	1.98
19381551--19381602	26	2.0	26	100	0	104	26	26	19	26	1.99
19379427--19384071	902	5.2	899	84	5	5673	26	24	23	25	2.00
19382456--19382505	26	1.9	26	91	0	82	24	26	20	30	1.98
19384715--19385087	159	2.4	157	82	3	419	20	27	28	23	1.99
19385061--19385113	26	2.0	26	100	0	106	30	26	16	26	1.97
19386652--19386704	26	2.0	26	89	7	81	26	28	20	24	1.99
19385777--19390789	902	5.6	899	84	3	6233	25	23	23	26	2.00
19388448--19388500	26	2.0	26	92	0	88	24	24	20	30	1.99
19389350--19389402	26	2.0	26	92	0	88	26	22	20	30	1.98
19390926--19390978	26	2.0	26	92	0	88	30	24	18	26	1.98
19391830--19391882	26	2.0	26	96	0	97	28	26	16	28	1.97
19390915--19393535	880	2.9	882	85	4	3518	25	24	23	25	2.00
19392860--19394209	710	1.9	712	88	1	2028	28	23	22	25	1.99
19395217--19395266	26	1.9	26	95	0	91	22	26	22	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19396058--19396110	26	2.0	26	100	0	106	26	26	20	26	1.99
19394547--19396227	841	2.0	841	88	2	2482	26	24	22	26	2.00
19397767--19397818	26	2.0	26	92	0	86	32	26	15	25	1.95
19398663--19398712	26	1.9	26	100	0	100	24	26	22	28	1.99
19399552--19399604	26	2.0	26	92	0	88	28	24	18	28	1.98
19400440--19400491	25	2.0	26	96	3	97	26	23	21	28	1.99
19401335--19401387	26	2.0	26	100	0	106	26	26	20	26	1.99
19397670--19403029	904	6.0	893	86	2	7100	26	24	23	25	2.00
19402239--19402290	26	2.0	26	92	3	88	26	23	21	28	1.99
19402265--19405867	718	5.1	718	77	12	3251	26	24	23	25	2.00
19404087--19405879	717	2.5	707	83	8	2279	26	23	23	25	2.00
19406980--19407032	26	2.0	26	88	0	79	28	26	20	24	1.99
19407882--19407932	26	2.0	26	100	0	102	29	27	15	27	1.96
19406948--19408662	895	1.9	895	87	3	2503	26	24	23	25	2.00
19408885--19409615	365	2.0	365	85	2	984	22	28	25	23	1.99
19409585--19409637	26	2.0	26	92	0	88	26	22	22	28	1.99
19410488--19410537	26	1.9	26	95	0	91	26	26	20	28	1.99
19410967--19411019	26	2.0	26	88	0	79	28	22	22	26	1.99
19411238--19411290	26	2.0	26	96	0	97	28	26	18	26	1.98
19413003--19413055	26	2.0	26	92	0	88	28	24	20	26	1.99
19412142--19414862	870	3.1	870	85	5	3512	25	24	24	25	2.00
19413877--19413929	26	2.0	26	92	0	88	24	24	20	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19415040--19415092	26	2.0	26	96	0	97	26	28	20	24	1.99
19414586--19415133	272	2.0	272	83	2	699	20	26	28	24	1.99
19415933--19415985	26	2.0	26	92	0	88	28	22	20	28	1.99
19417680--19417731	25	2.1	25	85	0	68	32	19	17	30	1.95
19418581--19418633	26	2.0	26	100	0	106	26	26	20	26	1.99
19416825--19421015	872	4.7	893	85	5	5248	26	24	24	25	2.00
19419284--19419309	4	6.5	4	100	0	52	0	73	26	0	0.84
19426899--19426949	26	2.0	26	92	0	84	29	23	17	29	1.97
19427707--19427759	26	2.0	26	88	0	79	24	22	24	28	2.00
19430235--19430307	28	2.7	26	81	12	76	24	27	17	30	1.97
19431145--19431197	26	2.0	26	96	0	97	26	24	20	28	1.99
19432031--19432109	26	3.0	26	96	0	149	27	26	18	26	1.98
19432954--19433006	26	2.0	26	92	0	88	26	22	20	30	1.98
19435371--19435423	26	2.0	26	96	0	97	26	24	20	28	1.99
19436938--19436990	26	2.0	26	96	0	97	32	26	15	26	1.95
19437842--19437894	26	2.0	26	100	0	106	26	26	20	26	1.99
19438736--19438788	26	2.0	26	88	0	79	26	20	20	32	1.98
19439625--19439677	26	2.0	26	92	0	88	26	22	20	30	1.98
19436107--19451020	900	16.4	898	73	11	9209	25	24	24	25	2.00
19441427--19441479	26	2.0	26	96	0	97	26	24	20	28	1.99
19443450--19443502	26	2.0	26	100	0	106	26	26	20	26	1.99
19444346--19444398	26	2.0	26	96	0	97	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19442596--19451020	894	9.4	892	85	4	10375	25	24	24	25	2.00
19447941--19448009	26	2.7	26	95	0	120	27	26	15	30	1.96
19449737--19449787	26	2.0	26	84	0	66	31	21	15	31	1.95
19450639--19450717	26	3.0	26	92	0	140	26	24	20	29	1.99
19453877--19453929	26	2.0	26	88	0	79	26	22	22	28	1.99
19454775--19454825	26	2.0	26	96	0	93	27	25	19	27	1.99
19455561--19455592	12	2.7	12	90	0	55	25	28	37	9	1.87
19455673--19455723	26	2.0	26	88	0	75	29	23	17	29	1.97
19451057--19457415	898	7.2	890	84	5	7436	26	24	23	25	2.00
19457588--19457643	26	2.2	26	96	0	103	28	23	19	28	1.98
19460773--19460825	26	2.0	26	92	0	88	26	22	20	30	1.98
19462559--19462609	26	2.0	26	84	0	66	29	21	19	29	1.98
19459886--19468436	898	9.5	898	84	4	10166	26	24	23	25	2.00
19463455--19463504	26	1.9	26	91	0	82	24	30	18	28	1.97
19464343--19464422	26	3.1	26	92	0	133	25	22	22	30	1.99
19467032--19467084	26	2.0	26	96	0	97	28	26	18	26	1.98
19468474--19468799	171	1.9	171	83	2	422	18	31	27	22	1.97
19469275--19469327	26	2.0	26	100	0	106	26	22	20	30	1.98
19470171--19470223	26	2.0	26	92	0	88	26	22	20	30	1.98
19468843--19471841	902	3.3	892	88	2	4236	26	25	23	25	2.00
19471073--19471125	26	2.0	26	100	0	106	26	26	20	26	1.99
19472714--19472766	26	2.0	26	89	7	81	28	24	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19476428--19476477	26	1.9	26	95	0	91	24	30	18	28	1.97
19477327--19477379	26	2.0	26	92	0	88	28	24	18	28	1.98
19475565--19480680	896	5.7	896	86	4	6745	25	24	24	25	2.00
19478223--19478275	26	2.0	26	96	0	97	28	26	18	26	1.98
19479110--19479162	26	2.0	26	92	0	88	30	24	18	26	1.98
19480001--19480050	26	1.9	26	95	0	91	20	28	24	28	1.99
19481415--19481467	26	2.0	26	96	0	97	28	24	20	26	1.99
19481376--19484752	902	3.9	841	80	9	3161	26	24	23	25	2.00
19483128--19483180	26	2.0	26	96	0	97	28	22	18	30	1.98
19484030--19484082	26	2.0	26	85	0	70	30	20	18	30	1.97
19482142--19484898	898	3.1	896	87	2	3852	25	24	23	25	2.00
19486113--19486165	26	2.0	26	100	0	106	26	26	20	26	1.99
19487006--19487058	26	2.0	26	92	0	88	30	26	18	24	1.98
19486087--19488671	893	2.9	889	86	3	3555	26	24	23	26	2.00
19489418--19489470	26	2.0	26	100	0	106	26	26	20	26	1.99
19488953--19490219	636	2.0	630	82	4	1560	26	25	23	25	2.00
19490054--19490107	26	2.1	26	89	0	81	25	25	20	27	1.99
19489592--19491973	885	2.7	880	82	7	2803	26	25	23	25	2.00
19491840--19491890	26	2.0	26	88	0	75	25	25	19	29	1.99
19494293--19494348	26	2.2	26	86	0	76	32	25	16	26	1.96
19496105--19496157	26	2.0	26	100	0	106	26	26	20	26	1.99
19492514--19497794	919	5.9	886	84	5	6238	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19496573--19496640	26	2.6	26	95	0	118	54	13	7	25	1.64
19498412--19498464	26	2.0	26	88	0	79	26	22	22	28	1.99
19498438--19499936	721	2.1	721	89	1	2247	27	24	23	25	2.00
19500040--19500092	26	2.0	26	92	0	88	26	24	22	26	2.00
19501842--19501892	26	2.0	26	96	0	93	23	27	17	31	1.97
19499160--19504193	901	5.6	901	85	4	6289	26	24	23	25	2.00
19504305--19504356	26	2.0	26	96	0	95	28	26	17	26	1.97
19505208--19505260	26	2.0	26	85	7	72	30	20	18	30	1.97
19507833--19507885	26	2.0	26	96	0	97	32	26	15	26	1.95
19508719--19508797	26	3.0	26	94	0	140	27	25	18	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117