genome.fa.s101.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  83  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15018640--15018684	23	1.9	24	90	4	74	6	11	2	80	0.99
15018638--15018689	23	2.2	24	83	10	72	5	13	1	78	1.01
15024952--15024980	15	1.9	15	100	0	58	27	3	13	55	1.55
15025620--15025651	15	2.1	15	94	0	55	46	0	25	28	1.53
15028720--15028759	15	2.5	17	88	8	57	82	2	5	10	0.91
15028822--15028907	45	1.9	45	88	4	129	31	12	8	47	1.71
15028859--15029196	58	5.8	58	82	7	393	38	12	5	43	1.66
15029094--15029186	30	3.2	30	62	17	77	39	15	6	38	1.73
15029233--15029319	3	28.7	3	70	17	56	64	3	3	28	1.26
15029231--15029255	13	1.9	13	100	0	50	80	0	0	20	0.72
15029258--15029311	19	2.7	19	78	18	56	61	5	0	33	1.19
15029273--15029327	17	3.2	16	80	16	65	65	1	1	30	1.13
15029273--15029323	13	3.8	13	84	12	59	64	1	1	31	1.15
15029237--15029328	41	2.3	40	80	10	98	65	3	3	28	1.24
15030108--15030168	21	2.8	22	78	9	72	62	1	8	27	1.33
15030164--15030208	3	14.7	3	90	4	72	68	0	2	28	1.01
15030573--15030629	26	2.3	25	80	14	64	26	5	14	54	1.61
15039103--15039142	20	2.0	20	90	0	62	40	15	12	32	1.84
15040011--15040304	146	2.0	146	100	0	588	38	11	21	28	1.89
15041234--15041272	20	2.0	20	90	10	62	53	43	0	2	1.14
15041252--15041389	39	3.5	38	78	13	120	48	36	0	14	1.44
15041269--15041400	6	20.7	6	74	17	72	49	34	0	15	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15041281--15041392	13	8.6	13	72	17	65	50	35	0	14	1.43
15041293--15041417	64	2.0	64	84	6	164	48	36	0	15	1.45
15042445--15042500	25	2.2	25	90	6	87	26	10	8	53	1.65
15045599--15045650	19	2.5	20	78	12	61	78	0	17	3	0.89
15045600--15045691	28	3.5	27	73	16	77	75	0	19	5	1.00
15045604--15045679	9	9.0	8	71	16	55	76	0	19	3	0.94
15045630--15045724	41	2.3	40	79	16	97	72	0	18	8	1.09
15047582--15047660	40	2.0	40	85	9	108	17	16	16	49	1.80
15047681--15047869	103	1.8	104	82	13	246	30	17	13	37	1.89
15048061--15048114	24	2.2	24	77	6	56	25	14	16	42	1.87
15049143--15049183	19	2.2	19	86	0	55	51	7	12	29	1.66
15051972--15052016	15	2.8	15	81	15	54	42	0	0	57	0.98
15051975--15052014	18	2.3	18	87	8	57	37	0	0	62	0.95
15051972--15052014	16	2.6	17	82	13	54	39	0	0	60	0.97
15053756--15053792	18	2.1	18	89	0	56	70	0	0	29	0.88
15056798--15056868	33	2.2	33	82	9	85	66	1	2	29	1.15
15060227--15060261	3	11.7	3	100	0	70	31	0	0	68	0.90
15067714--15067738	2	12.5	2	100	0	50	52	0	0	48	1.00
15078400--15078448	16	3.1	16	82	8	55	38	2	0	59	1.09
15079286--15079320	17	2.2	15	90	10	52	82	11	0	5	0.82
15079873--15079925	21	2.5	21	87	6	63	9	26	3	60	1.45
15079883--15079925	21	2.1	20	95	4	77	9	25	4	60	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15080738--15080856	61	2.0	61	94	0	211	37	22	6	32	1.81
15081115--15081148	17	2.0	17	88	0	50	64	11	5	17	1.45
15083001--15083030	15	2.0	15	100	0	60	46	33	6	13	1.69
15086533--15086561	3	9.7	3	100	0	58	65	0	0	34	0.93
15086759--15086788	10	3.1	10	95	4	53	36	0	0	63	0.95
15086761--15086790	9	3.2	9	95	4	51	36	0	0	63	0.95
15090345--15090676	165	2.0	165	98	0	637	39	12	11	36	1.80
15090726--15090751	11	2.4	11	100	0	52	0	7	0	92	0.39
15095243--15095291	22	2.2	23	88	7	82	44	8	12	34	1.71
15095249--15095292	22	2.0	22	100	0	88	45	9	13	31	1.75
15097309--15097385	35	2.2	35	80	0	91	28	12	10	48	1.75
15101917--15101985	35	2.0	35	82	5	86	33	14	5	46	1.68
15102680--15102721	18	2.3	18	87	0	57	23	9	28	38	1.86
15104222--15104293	33	2.2	33	90	5	110	34	6	13	44	1.71
15108793--15108841	19	2.5	20	80	3	55	14	6	0	79	0.91
15108704--15109113	137	3.0	137	93	0	696	30	9	11	49	1.70
15108932--15108971	17	2.3	18	86	4	55	12	10	0	77	0.99
15109063--15109091	11	2.6	11	100	0	58	17	0	0	82	0.66
15109066--15109135	8	8.1	8	71	25	54	15	4	0	80	0.87
15109071--15109134	28	2.3	28	84	7	78	15	4	0	79	0.89
15109071--15109138	14	4.9	14	77	15	70	16	5	0	77	0.95
15111344--15111413	30	2.3	31	80	7	81	42	0	1	55	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15111386--15111437	22	2.5	22	93	6	90	50	0	0	50	1.00
15117373--15117415	20	2.2	19	87	4	59	39	41	0	18	1.51
15117455--15117508	17	3.1	17	86	2	72	48	35	1	14	1.55
15117573--15117622	18	2.9	17	82	5	64	68	28	0	4	1.08
15117622--15117688	25	2.7	25	81	2	82	49	35	2	11	1.55
15117776--15117812	19	1.9	19	89	10	58	40	43	0	16	1.48
15121575--15121604	5	6.0	5	96	0	51	16	40	0	43	1.48
15125205--15125715	129	4.0	128	80	7	459	38	8	10	42	1.69
15125771--15126157	131	3.0	127	77	7	361	37	5	8	48	1.58
15128761--15128888	60	2.1	61	94	1	222	35	13	14	35	1.86
15130145--15130187	20	2.2	20	100	0	86	9	4	16	69	1.31
15140197--15140239	22	2.0	22	95	0	77	18	20	2	58	1.50
15140593--15140632	20	2.0	20	85	0	53	82	5	0	12	0.82
15143207--15143258	17	3.0	16	76	23	52	76	0	19	3	0.93
15143222--15143260	20	2.0	20	90	10	62	79	0	17	2	0.84
15143209--15143258	9	5.6	9	83	11	59	78	0	18	4	0.91
15143259--15143368	57	1.9	58	80	15	131	66	6	16	10	1.42
15144544--15144781	118	2.0	118	90	2	370	24	9	19	46	1.80
15146404--15146498	50	1.9	48	83	10	120	21	4	7	67	1.33
15147258--15147568	72	4.0	81	79	9	319	33	8	15	42	1.77
15147306--15147489	80	2.3	80	86	2	255	36	8	13	40	1.76
15147430--15147612	72	2.5	72	81	3	190	31	9	17	41	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15147771--15147816	23	2.0	22	87	4	65	28	6	19	45	1.75
15149392--15149451	32	1.9	32	89	3	95	38	5	6	50	1.51
15149722--15149775	28	1.9	28	81	7	65	51	0	5	42	1.25
15151719--15151802	12	6.8	12	71	12	55	48	27	2	21	1.62
15151718--15151802	24	3.5	24	73	12	82	48	27	2	22	1.63
15154201--15154229	15	2.0	15	93	6	51	13	20	0	65	1.26
15155839--15155899	28	2.1	29	90	3	97	42	9	6	40	1.64
15158662--15158811	75	2.0	74	90	1	237	24	22	12	40	1.89
15160278--15160315	19	2.0	20	84	5	51	21	15	13	50	1.78
15160271--15160363	29	3.2	28	76	3	87	19	9	15	55	1.66
15163774--15163802	13	2.1	14	93	6	51	20	3	0	75	0.94
15166905--15166952	16	2.9	16	76	17	53	70	2	20	6	1.19
15167482--15167533	2	26.0	2	80	0	59	40	0	7	51	1.30
15177399--15177456	30	1.9	30	86	6	82	39	12	12	36	1.80
15179270--15179342	31	2.5	28	74	18	69	57	1	1	39	1.16
15181617--15181724	31	3.5	31	81	7	130	22	5	28	43	1.75
15181585--15181727	62	2.3	62	84	3	173	23	4	29	42	1.74
15182458--15182650	91	2.1	91	82	3	246	33	10	22	34	1.88
15186036--15186071	17	2.1	17	89	0	54	13	0	2	83	0.76
15189589--15189730	71	2.0	69	81	14	166	53	4	18	23	1.63
15190982--15191035	26	2.1	26	89	0	81	25	18	16	38	1.92
15194053--15194115	30	2.1	29	82	11	74	34	12	6	46	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15203902--15203951	17	2.9	17	75	0	55	44	10	6	40	1.63
15205592--15205634	21	2.0	21	95	0	77	20	25	37	16	1.93
15211833--15211871	3	13.0	3	94	0	69	33	2	0	64	1.08
15214887--15214971	35	2.4	35	82	3	100	51	9	17	21	1.73
15215026--15215105	35	2.3	35	88	0	115	51	16	17	15	1.77
15215118--15215208	34	2.6	34	84	6	112	45	10	23	20	1.83
15216310--15216374	16	3.9	16	75	18	60	1	9	4	84	0.82
15216310--15216370	17	3.5	17	84	6	77	1	8	4	85	0.80
15216311--15216374	15	4.2	15	74	16	60	1	9	4	84	0.83
15227016--15227054	3	13.0	3	88	0	60	5	0	28	66	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117