genome.fa.s101.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  58  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10807185--10807384	79	2.6	78	87	3	285	34	18	11	36	1.86
10807448--10807495	18	2.5	19	93	6	80	43	14	6	35	1.71
10807732--10807777	23	2.0	23	82	0	56	26	19	4	50	1.66
10807721--10807941	79	2.8	80	79	5	200	29	20	10	38	1.86
10808641--10808716	24	3.1	24	83	11	84	9	13	1	76	1.08
10808640--10808716	25	3.1	24	81	9	75	9	12	1	76	1.07
10809071--10809113	10	3.9	11	79	11	52	9	9	0	81	0.88
10812751--10812856	55	1.9	54	83	5	133	22	15	6	55	1.63
10813266--10813330	11	5.9	11	72	13	53	78	4	3	13	1.03
10813293--10813325	12	2.8	12	90	4	50	87	3	0	9	0.63
10818759--10818912	77	2.0	79	89	2	240	42	11	17	28	1.83
10819561--10819599	17	2.2	18	86	4	53	82	7	5	5	0.96
10819561--10819600	18	2.2	18	86	0	53	82	7	5	5	0.94
10821374--10821545	74	2.4	75	77	8	169	45	18	5	30	1.72
10829250--10829284	2	18.0	2	94	5	63	48	0	0	51	1.00
10831111--10831147	18	2.1	18	90	10	58	32	0	10	56	1.34
10831453--10831502	26	1.9	26	83	0	64	34	10	8	48	1.66
10841302--10841345	22	2.0	22	86	0	61	40	2	9	47	1.48
10841426--10841468	22	2.0	22	85	0	59	41	2	4	51	1.35
10841257--10841504	124	2.0	124	97	0	469	37	7	16	38	1.76
10842357--10842394	2	19.5	2	94	5	69	50	0	0	50	1.00
10843716--10843782	34	2.0	34	100	0	134	32	11	8	46	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10843989--10844020	2	16.0	2	100	0	64	50	0	0	50	1.00
10844299--10844352	19	2.7	20	75	16	58	68	1	1	27	1.10
10845921--10845957	19	1.9	19	94	0	65	21	37	29	10	1.88
10847065--10847102	20	1.9	20	88	0	58	63	2	28	5	1.30
10847111--10847242	64	2.1	64	95	1	239	48	3	15	31	1.63
10848106--10848222	60	2.0	59	86	5	164	29	8	9	52	1.63
10848219--10848434	59	3.8	57	80	8	201	37	12	7	42	1.72
10849214--10849377	81	2.0	81	98	0	319	42	20	13	23	1.87
10850664--10850849	44	4.2	44	78	4	198	44	18	12	24	1.85
10850680--10850852	89	2.0	87	87	2	247	43	19	13	23	1.87
10850668--10851018	42	8.1	44	69	14	160	44	18	13	24	1.85
10850798--10851022	83	2.6	86	82	9	230	44	17	13	24	1.85
10850837--10851031	42	4.6	42	76	6	169	43	16	13	26	1.85
10851308--10851536	79	2.9	79	86	1	307	31	17	13	36	1.89
10851497--10851548	21	2.4	23	81	9	65	44	11	7	36	1.70
10854843--10854919	19	4.0	20	75	12	63	77	0	14	7	0.97
10854835--10854884	25	2.0	26	92	4	84	74	0	18	8	1.06
10854864--10854899	9	3.9	9	88	3	54	88	0	11	0	0.50
10854846--10854918	25	2.9	25	80	8	60	80	0	13	5	0.87
10856025--10856075	21	2.5	21	96	3	95	49	0	0	50	1.00
10856048--10856104	30	1.9	30	85	0	78	52	1	0	45	1.11
10857151--10857554	42	9.7	41	80	9	408	24	16	21	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10857150--10857554	83	4.9	84	81	6	414	24	16	21	37	1.93
10857158--10857554	125	3.2	125	84	7	486	24	16	21	37	1.93
10857497--10857883	100	3.9	101	86	6	501	37	13	16	32	1.87
10861082--10861106	8	3.1	8	100	0	50	24	0	12	64	1.27
10861110--10861148	19	2.2	19	86	9	55	30	2	5	61	1.31
10861566--10861603	14	2.8	14	81	18	53	42	2	5	50	1.39
10865205--10865250	23	2.0	23	91	0	74	52	13	6	28	1.65
10865882--10865928	15	3.1	15	96	0	85	10	36	8	44	1.70
10869827--10870171	170	2.0	170	89	1	521	33	20	14	31	1.93
10871376--10871413	10	3.8	10	96	0	67	36	0	10	52	1.36
10872437--10872494	28	2.1	28	93	0	98	27	17	13	41	1.87
10873755--10873805	4	12.8	4	80	12	52	21	0	3	74	0.98
10873742--10873824	14	5.5	14	75	21	62	20	3	2	73	1.10
10875864--10875896	16	2.1	16	100	0	66	24	15	24	36	1.93
10876405--10876442	16	2.3	17	86	4	51	68	7	2	21	1.28
10877146--10877232	3	30.3	3	72	13	67	27	5	1	65	1.22
10877146--10877226	20	4.2	20	73	17	73	28	6	1	64	1.25
10878112--10878142	13	2.4	13	88	0	53	19	0	3	77	0.90
10878104--10878139	19	1.9	19	88	5	56	19	0	2	77	0.88
10878130--10878174	17	2.6	17	100	0	90	17	8	4	68	1.32
10878313--10878397	42	2.1	43	84	8	115	57	8	3	30	1.45
10878382--10878422	17	2.3	18	87	8	57	58	9	0	31	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10878380--10878425	17	2.8	16	77	9	56	54	15	0	30	1.41
10880650--10880874	63	3.6	63	72	8	190	41	9	10	38	1.73
10880662--10880917	125	2.0	125	81	9	299	40	9	10	39	1.73
10885572--10885620	23	2.1	23	96	0	89	20	0	34	44	1.52
10888734--10888778	22	2.0	22	87	8	65	26	20	17	35	1.95
10889671--10889724	23	2.4	22	84	3	72	59	1	0	38	1.08
10893176--10893207	14	2.1	16	88	11	50	75	3	0	21	0.95
10893388--10893417	15	2.0	15	93	0	51	36	0	0	63	0.95
10893694--10893737	15	2.9	15	81	15	54	50	0	0	50	1.00
10893694--10893737	17	2.8	17	86	10	58	50	0	0	50	1.00
10893697--10893776	29	2.8	29	73	21	78	50	1	0	48	1.08
10893750--10893794	20	2.3	19	76	3	54	57	2	0	40	1.11
10893943--10893988	19	2.3	20	86	13	69	8	10	0	80	0.91
10893943--10894025	23	3.5	22	78	18	62	12	12	0	75	1.04
10894372--10894451	26	3.0	27	75	12	76	37	0	1	61	1.04
10894944--10894985	21	2.0	21	86	9	59	42	0	2	54	1.13
10894953--10895000	21	2.3	21	82	3	53	43	0	2	54	1.12
10895361--10895433	36	2.0	36	97	0	137	24	15	10	49	1.76
10901170--10901231	30	2.1	30	96	0	115	45	6	14	33	1.71
10901847--10901890	22	2.0	21	86	4	61	63	2	0	34	1.07
10904028--10904070	18	2.4	18	84	0	59	27	4	32	34	1.78
10904058--10904137	19	4.2	19	78	12	92	20	1	31	47	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10905033--10905065	16	2.1	16	94	0	57	54	9	0	36	1.32
10913539--10913666	52	2.5	51	83	7	168	27	16	7	48	1.73
10913692--10913733	11	3.8	11	93	0	75	54	28	0	16	1.42
10913975--10914098	25	5.0	25	74	5	99	21	33	6	37	1.79
10914632--10914785	52	3.0	52	77	11	174	27	20	7	45	1.77
10914812--10914851	11	3.6	11	86	0	62	52	27	0	20	1.46
10920059--10920151	45	2.1	45	83	4	116	36	7	20	35	1.81
10920300--10920405	47	2.3	46	80	4	108	33	7	16	41	1.77
10920371--10920439	23	3.0	23	68	21	63	34	5	14	44	1.69
10920348--10920508	46	3.5	46	82	5	182	36	4	15	42	1.69
10920707--10920760	20	2.8	20	78	18	60	29	11	16	42	1.83
10924426--10924458	16	2.2	16	89	10	52	30	3	6	60	1.36
10929781--10929837	28	2.1	27	93	3	96	43	15	10	29	1.80
10930736--10931192	180	2.5	182	82	4	514	31	15	18	34	1.92
10933694--10933746	24	2.3	23	93	3	88	64	3	5	26	1.33
10934373--10934397	12	2.1	12	100	0	50	32	0	8	60	1.26
10934465--10934514	13	3.3	15	78	16	50	38	2	14	46	1.56
10934536--10934592	18	3.3	18	66	14	57	40	0	5	54	1.23
10942038--10942067	15	2.0	15	93	0	51	33	0	10	56	1.32
10952597--10952648	3	17.3	3	100	0	104	67	0	0	32	0.91
10953528--10953599	30	2.5	29	91	6	112	56	6	2	33	1.40
10955643--10955706	30	2.1	30	88	0	92	53	15	4	26	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10956205--10956296	31	3.0	29	75	20	89	45	4	5	44	1.46
10956670--10956699	14	2.1	14	93	0	51	23	6	0	70	1.11
10956669--10956722	21	2.6	21	75	13	58	24	5	0	70	1.08
10957747--10957776	13	2.3	13	94	0	51	50	13	26	10	1.73
10958111--10958354	60	4.1	59	78	7	262	48	6	8	36	1.60
10958111--10958349	120	2.0	119	83	7	297	49	6	8	35	1.58
10962183--10962253	28	2.7	26	79	14	90	80	0	16	2	0.83
10962188--10962250	31	2.1	31	88	11	96	77	0	19	3	0.90
10963500--10963712	25	9.2	24	72	19	175	39	10	12	37	1.77
10963494--10963712	46	4.8	46	84	6	309	39	10	12	37	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117