genome.fa.s101.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  9  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
902395--902434	20	1.9	22	85	10	57	42	2	0	55	1.13
903265--903310	22	2.2	22	88	7	69	43	0	6	50	1.28
904673--904714	3	14.0	3	100	0	84	66	0	0	33	0.92
906161--906214	20	2.7	21	82	8	67	38	0	1	59	1.08
906906--906945	14	2.9	14	85	10	55	57	0	2	40	1.12
907560--907605	23	2.0	23	100	0	92	47	4	4	43	1.42
908181--908213	17	1.9	17	93	0	57	75	15	0	9	1.03
909194--909652	156	2.9	156	97	0	855	38	18	14	29	1.90
909698--909722	1	25.0	1	100	0	50	100	0	0	0	0.00
909681--909721	12	3.0	14	86	10	50	85	4	0	9	0.73
910034--910079	19	2.3	20	88	3	67	23	19	32	23	1.97
910103--910143	19	2.1	19	86	4	55	17	24	34	24	1.96
910132--910201	31	2.3	31	85	12	99	24	24	24	27	2.00
910531--910637	44	2.4	45	77	16	118	66	6	6	20	1.38
910547--910624	43	1.9	42	87	10	117	65	7	7	19	1.43
910624--910732	40	2.7	38	74	20	105	65	6	0	28	1.17
910849--910889	16	2.7	15	92	7	66	60	2	0	36	1.10
910852--910908	26	2.1	28	87	6	82	63	5	0	31	1.17
911058--911103	21	2.3	20	82	14	51	60	0	2	36	1.09
911234--911274	21	1.9	22	85	5	57	56	29	2	12	1.49
911243--911367	29	4.4	28	77	9	83	51	31	3	14	1.58
911257--911390	56	2.3	57	81	8	157	49	32	2	15	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
911286--911388	28	3.7	27	80	11	100	48	31	2	17	1.62
913103--913145	4	10.8	4	79	0	50	18	4	2	74	1.10
917921--918306	194	2.0	190	86	2	529	32	18	16	32	1.94
919949--919998	21	2.4	21	100	0	100	30	24	28	18	1.97
920534--920587	24	2.2	23	81	18	65	25	5	3	64	1.32
920633--920662	3	10.3	3	92	7	53	30	0	0	70	0.88
921098--921142	24	1.9	23	81	4	54	20	6	22	51	1.70
921157--921220	19	3.7	19	67	30	54	23	26	20	29	1.99
921235--921277	20	2.2	20	95	0	77	34	32	25	6	1.83
921296--921340	20	2.2	20	84	0	54	33	28	22	15	1.95
921674--921708	1	35.0	1	100	0	70	0	0	0	100	0.00
921756--922215	156	2.9	156	97	0	841	30	14	17	37	1.90
925920--925955	10	3.6	10	92	0	63	88	0	11	0	0.50
925904--925948	11	3.9	11	85	5	54	82	0	15	2	0.77
925922--925963	9	4.4	10	82	11	52	83	0	14	2	0.75
927202--927978	41	18.9	40	89	6	1086	23	17	21	37	1.93
927202--927978	124	6.3	122	91	6	1121	23	17	21	37	1.93
927202--927978	83	9.5	80	89	6	1102	23	17	21	37	1.93
927989--928050	10	5.9	10	80	19	65	87	9	0	3	0.66
927988--928051	24	2.7	24	90	7	96	87	9	0	3	0.64
927988--928048	8	7.8	8	82	10	65	86	9	0	3	0.67
927990--928049	9	6.9	9	75	21	65	86	10	0	3	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
927989--928063	23	3.4	22	77	15	84	85	9	0	5	0.74
927988--928051	1	64.0	1	77	0	56	87	9	0	3	0.64
928234--928287	24	2.2	23	81	18	65	25	5	3	64	1.32
928338--928363	3	8.7	3	100	0	52	30	0	0	69	0.89
928798--928842	24	1.9	23	81	4	54	20	6	22	51	1.70
928936--928977	20	2.1	20	95	0	75	35	30	26	7	1.83
928996--929040	20	2.2	20	84	0	54	33	28	22	15	1.95
929376--929419	15	2.9	15	86	0	52	9	0	4	86	0.70
929374--929402	1	29.0	1	100	0	58	0	0	0	100	0.00
929449--929908	156	2.9	156	97	0	841	30	14	17	37	1.90
933794--933962	36	4.7	35	69	14	119	17	23	13	45	1.83
933770--933993	109	2.1	108	82	5	274	17	22	13	45	1.84
934058--934126	35	2.0	35	85	5	95	15	18	10	55	1.68
934149--934271	36	3.4	36	85	1	167	20	13	16	49	1.79
934149--934326	36	4.9	36	80	3	162	17	17	17	46	1.84
934552--934586	15	2.3	15	90	0	61	57	0	0	42	0.99
935692--935736	15	3.3	13	85	14	56	22	2	0	75	0.91
935914--935938	3	8.3	3	100	0	50	68	0	0	32	0.90
936030--936070	10	3.9	11	87	9	59	60	0	0	39	0.96
936208--936268	28	2.1	29	81	3	70	50	31	3	14	1.59
936249--936343	27	3.5	26	73	12	82	45	34	2	17	1.61
936235--936343	56	1.9	56	89	7	168	46	33	2	16	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
943957--944083	14	8.6	14	70	13	58	19	0	33	46	1.56
943954--944062	44	2.5	43	78	11	107	20	0	33	45	1.57
943981--944083	16	6.8	16	72	12	67	19	0	33	46	1.57
946032--946057	11	2.4	11	100	0	52	46	7	11	34	1.69
947397--947452	28	2.0	28	89	0	85	30	21	14	33	1.93
950152--950379	72	3.2	72	88	2	350	35	12	26	25	1.92
951809--951858	21	2.4	21	100	0	100	30	24	28	18	1.97
955907--956075	36	4.7	35	67	18	98	18	23	13	44	1.84
955883--956106	109	2.1	108	81	5	265	18	22	13	45	1.85
956171--956239	35	2.0	35	85	5	95	15	18	10	55	1.68
956262--956384	36	3.4	36	85	1	167	20	13	16	49	1.79
956262--956439	36	4.9	36	80	3	162	17	17	17	46	1.84
956665--956699	15	2.3	15	90	0	61	57	0	0	42	0.99
957807--957853	12	3.5	13	86	13	60	23	2	0	74	0.93
958032--958056	3	8.3	3	100	0	50	68	0	0	32	0.90
958135--958188	21	2.7	20	83	13	67	59	0	1	38	1.08
958328--958389	29	2.1	29	84	0	79	50	32	3	14	1.59
958356--958465	57	1.9	57	89	5	170	48	33	1	16	1.57
966056--966161	44	2.4	43	80	9	108	20	0	31	47	1.57
966139--966184	16	2.9	16	83	3	67	19	0	34	45	1.51
968129--968154	11	2.4	11	100	0	52	46	7	11	34	1.69
969493--969548	28	2.0	28	89	0	85	30	21	14	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
972242--972491	72	3.5	72	88	3	378	35	12	27	24	1.92
974195--974233	18	2.2	18	85	0	51	38	2	0	58	1.12
975492--975534	17	2.5	17	80	0	59	51	0	0	48	1.00
976739--976782	3	14.7	3	100	0	88	31	0	0	68	0.90
977521--977575	23	2.3	25	75	9	60	20	5	1	72	1.13
979989--980204	81	2.7	81	81	5	208	27	17	13	42	1.86
980034--980221	80	2.3	80	82	6	227	30	14	15	39	1.88
980330--980545	81	2.7	81	81	5	208	26	18	12	42	1.86
979917--980610	341	2.0	341	98	0	1343	31	15	13	39	1.86
980376--980562	80	2.3	81	85	4	245	29	15	14	39	1.88
981264--981303	20	1.9	22	90	10	66	42	0	0	57	0.98
981264--981312	20	2.3	21	86	10	64	40	0	0	59	0.98
981814--981870	21	2.8	21	84	5	64	45	5	1	47	1.35
982587--982634	17	2.8	17	87	9	71	33	0	0	66	0.92
983508--983542	18	1.9	18	88	0	52	57	0	0	42	0.99
984168--984210	19	2.2	20	83	4	52	53	2	2	41	1.26
984375--984407	17	1.9	17	93	0	57	54	0	0	45	0.99
984375--984413	17	2.3	16	86	8	51	48	2	0	48	1.15
986470--986563	49	1.9	49	89	4	145	47	4	6	41	1.48
988793--989186	58	6.7	58	86	4	524	32	13	7	46	1.71
988793--989185	117	3.4	115	85	7	549	32	13	7	46	1.71
988793--989185	115	3.4	114	86	5	554	32	13	7	46	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
989305--989358	7	7.4	7	82	10	56	81	3	0	14	0.82
989301--989332	14	2.2	15	94	5	57	75	3	0	21	0.95
990658--990807	8	18.0	8	75	19	96	10	0	9	79	0.98
990659--990806	29	5.5	26	76	21	130	10	0	8	80	0.94
990657--990806	34	4.5	35	77	18	140	10	1	8	79	1.00
990658--990806	66	2.2	67	84	8	196	10	0	8	79	0.96
990661--990805	50	3.0	48	83	11	154	10	0	8	80	0.96
990840--991306	83	5.7	82	90	4	710	36	23	16	22	1.94
990840--991306	124	3.8	123	88	5	692	36	23	16	22	1.94
990840--991306	41	11.3	41	89	4	692	36	23	16	22	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117