genome.fa.s101.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  53  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9910350--9910375	12	2.2	12	100	0	52	38	0	0	61	0.96
9911014--9911083	5	13.4	5	76	11	61	74	1	4	20	1.07
9911476--9911515	21	1.9	21	94	0	71	70	12	2	15	1.28
9911467--9911514	10	4.7	10	82	5	51	70	16	2	10	1.24
9911467--9911492	10	2.6	10	100	0	52	76	23	0	0	0.78
9911912--9911973	3	20.7	3	100	0	124	67	0	0	32	0.91
9912011--9912070	26	2.3	26	82	5	77	30	13	28	28	1.94
9912075--9912151	26	3.0	26	75	3	75	38	24	16	19	1.92
9912184--9912222	17	2.3	17	90	0	60	23	20	5	51	1.67
9914437--9914501	33	2.0	33	100	0	130	53	6	6	33	1.50
9915070--9915102	2	16.5	2	100	0	66	51	0	0	48	1.00
9917194--9917259	2	33.5	2	96	3	125	0	50	0	50	1.00
9918606--9918636	2	15.5	2	100	0	62	51	0	0	48	1.00
9920614--9920654	3	13.7	3	89	0	64	31	29	2	36	1.71
9924567--9924598	10	3.4	10	87	12	50	81	0	0	18	0.70
9924567--9924601	18	2.0	17	94	5	61	80	0	0	20	0.72
9924652--9924701	26	2.0	26	88	4	75	44	6	10	40	1.63
9924949--9925094	51	2.9	48	75	6	121	53	8	11	26	1.66
9924955--9925167	103	2.0	104	83	7	263	52	8	10	28	1.65
9925737--9925788	21	2.5	20	82	11	61	75	9	0	15	1.05
9926778--9926804	9	3.0	9	100	0	54	33	0	0	66	0.92
9926919--9926962	23	1.9	23	90	0	70	56	2	9	31	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9926967--9926992	3	8.7	3	100	0	52	30	0	0	69	0.89
9927249--9927377	15	8.5	15	73	10	100	46	33	0	19	1.56
9927248--9927377	30	4.3	30	73	12	113	46	33	0	19	1.55
9928534--9928566	13	2.5	13	90	0	57	6	6	9	78	1.08
9930473--9930519	15	3.1	15	73	11	51	27	36	6	29	1.82
9932103--9932141	19	2.0	19	85	5	51	71	0	23	5	1.05
9933598--9933648	23	2.2	23	82	6	59	35	11	11	41	1.78
9933867--9934129	125	2.1	125	81	6	311	26	14	17	41	1.88
9933837--9934129	42	7.0	41	80	7	279	26	13	17	41	1.87
9934704--9934761	27	2.2	27	84	6	75	48	3	13	34	1.60
9935525--9935557	12	2.8	12	90	4	50	81	0	0	18	0.68
9935719--9935748	16	1.9	15	93	6	51	86	0	0	13	0.57
9936093--9936197	55	1.9	54	81	9	124	54	8	7	29	1.58
9940766--9940864	51	1.9	51	83	4	128	43	20	2	34	1.63
9943486--9943537	26	2.0	26	96	0	95	51	23	13	11	1.73
9947812--9947869	28	2.1	28	93	0	98	37	13	18	29	1.90
9960498--9960537	18	2.2	19	86	8	57	15	12	0	72	1.12
9968306--9968437	30	4.5	30	78	6	112	43	6	3	46	1.45
9969511--9969556	2	23.5	2	95	4	85	0	47	0	52	1.00
9969556--9969586	2	15.5	2	93	0	53	45	0	0	54	0.99
9974565--9974629	30	2.2	29	89	5	96	33	3	3	60	1.28
9974653--9974758	30	3.5	30	72	13	101	46	3	7	42	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9975103--9975167	29	2.3	29	89	2	105	53	3	1	41	1.25
9975103--9975170	28	2.3	29	90	5	102	54	2	1	41	1.24
9977120--9977205	41	2.1	41	91	0	136	39	16	9	34	1.80
9980454--9980512	24	2.5	24	82	0	73	38	6	20	33	1.79
9980474--9980511	12	3.2	12	84	0	58	34	7	21	36	1.82
9980807--9980844	16	2.3	17	86	13	53	47	2	5	44	1.39
9983982--9984149	79	2.1	80	94	3	302	44	14	11	29	1.80
9988598--9988644	14	3.3	14	87	3	67	6	2	8	82	0.90
9988598--9988645	7	6.7	7	83	4	60	6	2	10	81	0.95
9988772--9988809	17	2.2	18	86	13	53	52	2	2	42	1.29
9988799--9988885	30	2.9	30	87	1	129	59	1	1	37	1.12
9992149--9992364	113	1.9	114	96	0	398	23	20	17	38	1.93
9992326--9992399	38	1.9	38	94	0	130	25	21	16	36	1.94
9994195--9994233	19	2.0	20	85	5	53	41	2	10	46	1.51
9994732--9995631	162	5.6	161	78	5	778	36	14	12	37	1.83
9994732--9995631	324	2.8	323	82	4	998	36	14	12	37	1.83
9995574--9995686	56	2.0	56	84	1	145	34	21	8	35	1.84
9995752--9996508	162	4.6	159	74	12	527	34	12	14	38	1.84
9996218--9996268	21	2.4	21	100	0	102	35	0	21	43	1.53
9996057--9996429	182	2.0	182	85	2	498	34	11	16	38	1.84
9996373--9996642	134	2.0	135	82	3	330	34	10	14	39	1.81
9996509--9997126	162	3.8	162	82	3	719	33	12	15	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9996991--9997260	134	2.0	135	84	3	357	35	10	14	39	1.81
9995900--10001082	618	8.2	618	87	6	7142	34	12	14	38	1.85
9997127--9997739	161	3.8	162	81	4	668	34	12	14	38	1.84
9997744--9998361	162	3.8	160	81	4	679	33	12	15	38	1.84
9998227--9998493	132	2.0	135	86	3	380	34	10	14	39	1.82
9998362--9998977	162	3.8	160	81	4	697	33	13	14	38	1.85
9998843--9999111	134	2.0	135	88	2	398	34	10	14	39	1.81
9998978--9999595	162	3.8	161	81	4	708	33	13	14	38	1.85
9998521--9999395	456	1.9	457	83	3	1134	33	12	15	38	1.85
9999460--9999715	134	1.9	135	83	4	338	35	10	13	39	1.79
9999699--9999850	76	2.0	76	92	0	250	25	22	13	38	1.91
9999834--10000289	160	2.8	161	84	4	589	33	11	15	39	1.83
10000154--10000423	134	2.0	135	86	2	373	35	11	14	38	1.82
10000290--10000902	162	3.8	162	81	5	699	34	13	14	37	1.85
10000771--10001023	132	1.9	132	82	4	314	35	11	13	38	1.81
10001007--10001157	75	2.0	76	93	1	259	26	23	11	38	1.89
10002832--10003007	93	1.9	93	82	4	221	15	22	5	56	1.59
10004614--10004645	10	3.4	10	87	12	50	81	0	0	18	0.70
10004614--10004649	18	2.0	18	94	0	63	80	0	0	19	0.71
10004602--10004647	13	3.5	13	82	5	56	82	2	2	13	0.85
10004689--10004749	26	2.4	25	81	8	61	44	6	9	39	1.64
10005782--10005853	32	2.3	31	79	6	83	76	4	6	12	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10007271--10007405	16	8.8	16	73	15	90	48	32	0	18	1.54
10008510--10008541	14	2.2	15	94	5	57	3	6	6	84	0.86
10008509--10008542	13	2.5	14	85	4	52	5	5	8	79	1.05
10011616--10011664	9	5.3	9	80	2	53	83	6	8	2	0.87
10012041--10012094	19	2.7	19	71	5	54	75	0	7	16	1.01
10012091--10012138	19	2.5	18	77	12	51	75	2	20	2	1.02
10012027--10012115	40	2.2	40	80	7	101	75	1	11	12	1.11
10013822--10014115	42	7.0	41	81	6	306	24	12	20	42	1.87
10013830--10014115	83	3.4	83	83	2	351	24	13	19	43	1.87
10014899--10015225	164	2.0	167	91	1	534	40	11	25	23	1.87
10015498--10015539	11	3.6	12	81	15	52	71	0	0	28	0.86
10020653--10020751	51	1.9	51	83	4	128	43	20	2	34	1.63
10023369--10023420	26	2.0	26	96	0	95	51	23	13	11	1.73
10025490--10025521	1	32.0	1	93	0	55	96	3	0	0	0.20
10035216--10035277	11	5.6	11	86	0	88	25	0	24	50	1.50
10035215--10035277	22	2.9	22	97	0	117	26	0	23	49	1.51
10035216--10035279	33	1.9	33	90	0	101	26	0	23	50	1.50
10035304--10035460	52	3.0	52	89	1	226	40	8	24	26	1.84
10036401--10036557	52	3.0	52	85	5	201	39	8	25	26	1.85
10040711--10040752	20	2.1	20	86	8	59	73	9	0	16	1.08
10046274--10046305	16	2.0	16	100	0	64	25	12	18	43	1.85
10048909--10049023	30	3.9	29	82	7	108	40	6	0	51	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10048932--10049044	30	3.8	29	77	11	111	42	8	1	46	1.45
10049949--10050001	20	2.7	19	94	5	88	30	9	26	33	1.88
10050158--10050182	2	12.5	2	100	0	50	0	48	0	52	1.00
10060000--10060057	12	4.8	12	84	0	80	37	6	20	34	1.80
10060000--10060057	24	2.4	24	91	0	89	37	6	20	34	1.80
10060353--10060390	17	2.3	17	86	13	53	47	5	5	42	1.48
10060353--10060390	16	2.3	16	86	13	51	47	5	5	42	1.48
10060616--10060679	29	2.2	29	86	8	85	10	21	9	57	1.61
10063936--10064089	82	1.9	82	89	2	238	28	5	22	43	1.76
10064209--10064368	78	2.1	78	97	0	302	30	13	9	46	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117