genome.fa.s101.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  111  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19221382--19221438	26	2.1	27	90	3	89	22	26	21	29	1.99
19222291--19222343	26	2.0	26	92	0	88	28	24	20	26	1.99
19224139--19225208	531	2.0	533	90	1	1709	29	20	21	27	1.98
19226712--19226764	26	2.0	26	92	7	90	28	26	16	28	1.97
19226707--19229287	898	2.9	887	86	4	3492	26	24	23	25	2.00
19228531--19230729	717	3.1	714	87	2	3049	26	24	23	26	2.00
19230834--19230884	26	2.0	26	88	7	77	25	31	13	29	1.94
19230895--19232307	712	2.0	711	89	2	2147	26	24	23	25	2.00
19232441--19232493	26	2.0	26	88	0	79	26	26	18	28	1.98
19233357--19233426	26	2.7	26	100	0	140	25	21	18	34	1.96
19235584--19235636	26	2.0	26	88	0	79	24	26	18	30	1.98
19235328--19237740	903	2.7	890	85	4	3110	23	24	24	26	2.00
19237965--19238020	26	2.2	26	96	0	103	28	23	21	26	1.99
19237784--19240525	899	3.1	882	89	3	4126	25	24	24	25	2.00
19244042--19244094	26	2.0	26	92	0	88	26	22	20	30	1.98
19244933--19244982	26	1.9	26	95	0	91	26	28	18	28	1.98
19240496--19250162	900	10.9	901	83	5	11035	25	24	23	25	2.00
19245833--19245885	26	2.0	26	89	7	81	30	24	16	28	1.97
19248464--19248515	26	2.0	26	88	0	77	30	26	17	25	1.97
19250616--19250668	26	2.0	26	96	0	97	28	26	18	26	1.98
19251472--19254016	887	2.8	890	86	3	3558	25	24	23	25	2.00
19253361--19255422	718	2.9	716	91	2	3238	26	24	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19259037--19259089	26	2.0	26	92	0	88	24	24	20	30	1.99
19260942--19260994	26	2.0	26	96	0	97	28	24	20	26	1.99
19262689--19262741	26	2.0	26	85	7	72	28	24	18	28	1.98
19264453--19264505	26	2.0	26	85	0	70	30	20	16	32	1.95
19265339--19265391	26	2.0	26	89	7	81	24	26	20	28	1.99
19266237--19266289	26	2.0	26	100	0	106	26	26	20	26	1.99
19261837--19275033	886	14.8	898	83	6	15276	25	25	23	25	2.00
19267134--19267212	26	3.0	26	98	0	149	26	27	18	26	1.98
19268913--19268965	26	2.0	26	96	0	97	28	26	18	26	1.98
19271399--19271429	12	2.6	12	100	0	62	6	35	41	16	1.74
19272515--19275024	872	2.9	870	86	4	3294	26	24	23	24	2.00
19274274--19276448	716	3.0	713	88	3	3169	26	24	22	26	2.00
19276578--19276630	26	2.0	26	92	0	88	28	22	20	28	1.99
19276604--19278070	718	2.0	717	88	1	2208	27	22	22	26	1.99
19278986--19281032	717	2.8	716	87	2	2958	27	23	22	26	1.99
19281428--19281481	26	2.1	26	89	0	81	25	22	20	31	1.98
19281454--19282836	718	1.9	718	88	2	2100	27	23	22	26	2.00
19283039--19283091	26	2.0	26	92	0	88	30	26	15	28	1.96
19283929--19283979	26	2.0	26	88	0	75	27	23	17	31	1.97
19282175--19288500	888	7.1	879	82	6	6949	25	24	23	25	2.00
19284819--19284871	26	2.0	26	96	0	97	24	26	22	26	2.00
19288356--19288408	26	2.0	26	92	0	88	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19289419--19289471	26	2.0	26	92	7	90	26	22	22	28	1.99
19289387--19291045	903	1.8	905	92	1	2806	25	25	23	25	2.00
19292857--19292887	12	2.6	12	100	0	62	12	29	19	38	1.89
19292646--19294119	718	2.0	718	86	3	2046	27	23	22	26	2.00
19294249--19294301	26	2.0	26	96	0	97	28	26	18	26	1.98
19293376--19296835	900	3.9	898	87	2	4763	25	24	23	25	2.00
19295144--19295196	26	2.0	26	96	0	97	28	26	18	26	1.98
19293376--19296836	896	3.9	899	87	2	4777	26	24	23	25	2.00
19298548--19298600	26	2.0	26	89	7	81	26	26	18	28	1.98
19299429--19299483	26	2.1	26	86	0	74	29	25	18	27	1.98
19296783--19300208	886	3.8	881	84	5	4266	26	24	24	25	2.00
19301026--19301076	26	1.9	27	84	11	70	25	29	19	25	1.99
19302637--19302662	12	2.2	12	100	0	52	0	65	26	7	1.20
19302843--19302897	29	1.9	28	88	3	83	32	25	16	25	1.96
19303762--19303814	26	2.0	26	88	0	79	24	22	20	32	1.98
19300159--19308078	904	8.9	897	83	5	9287	26	24	23	25	2.00
19305519--19305573	26	2.2	25	83	3	65	25	20	20	34	1.96
19306402--19306454	26	2.0	26	92	7	90	30	26	16	26	1.97
19307434--19308788	702	1.9	709	89	3	2086	27	22	23	26	1.99
19310545--19310597	26	2.0	26	96	0	97	28	26	18	26	1.98
19311441--19311490	26	1.9	26	100	0	100	24	26	22	28	1.99
19312329--19312381	26	2.0	26	92	0	88	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19310449--19314003	888	4.0	890	86	2	4651	26	24	23	25	2.00
19313218--19313269	25	2.0	26	92	3	88	28	23	19	28	1.98
19313243--19314725	715	2.1	713	87	2	2159	27	23	22	26	1.99
19314826--19314878	26	2.0	26	100	0	106	22	26	22	28	1.99
19316655--19316725	25	2.8	25	97	0	133	28	28	19	23	1.99
19317545--19317597	26	2.0	26	88	0	79	28	22	18	30	1.98
19317697--19317749	24	2.2	24	86	0	70	35	24	24	15	1.94
19318204--19318256	26	2.0	26	96	0	97	28	26	22	22	1.99
19319097--19319149	26	2.0	26	96	0	97	26	28	20	24	1.99
19317763--19320073	891	2.6	894	86	4	3193	25	25	24	24	2.00
19319999--19320051	26	2.0	26	92	0	88	28	20	18	32	1.97
19319840--19320236	185	2.1	185	86	0	544	21	28	27	22	1.99
19320184--19320262	26	3.0	26	98	0	149	27	26	18	26	1.98
19320210--19323272	906	3.4	897	83	7	3738	25	24	24	25	2.00
19323440--19323492	26	2.0	26	96	0	97	28	26	18	26	1.98
19325114--19325163	25	2.0	25	100	0	100	28	24	20	28	1.99
19324771--19325539	382	2.0	387	85	5	1040	22	26	26	24	2.00
19325488--19325539	25	2.0	26	88	3	79	26	23	23	26	2.00
19326389--19326438	26	1.9	26	95	0	91	24	24	24	28	2.00
19327290--19327342	26	2.0	26	92	0	88	28	24	18	28	1.98
19325161--19328281	899	3.5	896	85	2	4027	25	24	24	25	2.00
19328191--19328242	26	2.0	26	88	0	77	32	19	21	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19328460--19328512	26	2.0	26	96	0	97	28	26	18	26	1.98
19330250--19330302	26	2.0	26	92	7	90	30	26	16	26	1.97
19331127--19331179	26	2.0	26	92	0	88	24	24	20	30	1.99
19331860--19331911	26	2.0	26	96	0	95	26	25	19	28	1.98
19332315--19332367	26	2.0	26	96	0	97	26	28	20	24	1.99
19331885--19332407	271	1.9	272	83	2	676	21	26	28	23	1.99
19333217--19333269	26	2.0	26	96	0	97	26	28	20	24	1.99
19333243--19339269	887	6.9	857	85	5	7295	25	24	24	25	2.00
19334547--19334605	26	2.2	27	84	6	75	57	6	10	25	1.56
19334963--19335015	26	2.0	26	85	0	70	26	26	20	26	1.99
19335852--19335904	26	2.0	26	96	0	97	26	24	20	28	1.99
19344986--19345036	26	2.0	26	88	0	75	31	25	15	27	1.96
19348221--19348293	26	2.8	26	91	0	119	30	23	17	28	1.97
19350002--19350054	26	2.0	26	92	0	88	26	26	18	28	1.98
19350897--19350948	25	2.0	26	96	3	97	26	19	21	32	1.97
19347343--19353298	919	6.7	893	82	7	6334	26	24	24	25	2.00
19354152--19354204	26	2.0	26	88	0	79	28	22	18	30	1.98
19355041--19355092	26	2.0	26	88	0	77	32	26	15	25	1.95
19357537--19357592	26	2.2	26	90	0	85	30	21	19	28	1.98
19358693--19358745	26	2.0	26	96	0	97	26	24	20	28	1.99
19360245--19360295	26	2.0	26	100	0	102	27	23	17	31	1.97
19359860--19362496	912	3.0	876	83	8	3260	26	25	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19361978--19362030	26	2.0	26	92	0	88	28	22	20	28	1.99
19362215--19362246	12	2.7	12	95	0	55	12	34	18	34	1.89
19362574--19362626	26	2.0	26	92	0	88	24	28	18	28	1.98
19364314--19364366	26	2.0	26	96	0	97	26	24	20	28	1.99
19365215--19365266	26	2.0	25	96	3	95	26	25	21	26	1.99
19366095--19366147	26	2.0	26	96	0	97	24	26	22	26	2.00
19363444--19368546	888	5.7	887	84	4	6264	26	24	23	25	2.00
19367886--19367938	26	2.0	26	88	0	79	22	24	20	32	1.98
19368430--19368663	117	2.0	117	100	0	468	33	23	17	24	1.97
19370804--19370856	26	2.0	26	89	7	81	30	24	16	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117