genome.fa.s101.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  37  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6532480--6532538	31	1.9	31	85	0	82	45	25	10	18	1.81
6543560--6543628	31	2.2	31	86	0	93	49	23	11	15	1.77
6543589--6543778	95	2.0	95	91	2	310	53	17	18	10	1.71
6545221--6545486	147	1.8	147	91	3	446	48	15	18	17	1.81
6545446--6545530	44	1.9	44	97	0	161	52	11	21	14	1.72
6550355--6550401	2	23.5	2	93	0	76	44	0	2	53	1.12
6550597--6551075	232	2.1	232	87	2	687	43	3	9	43	1.54
6551090--6551125	19	1.9	19	88	5	56	36	0	0	63	0.94
6551117--6551155	20	1.9	21	94	5	71	46	0	0	53	1.00
6551121--6551187	33	2.0	34	85	8	93	47	0	0	52	1.00
6554695--6554879	95	1.9	95	87	2	273	53	17	18	10	1.72
6554864--6554919	28	2.0	28	86	6	78	53	5	23	17	1.64
6555630--6555700	31	2.3	31	85	2	97	54	15	9	19	1.68
6556981--6557200	113	1.9	114	89	2	345	46	19	16	16	1.84
6560086--6560115	14	2.1	14	100	0	60	53	20	6	20	1.67
6562906--6563022	22	5.3	21	76	14	94	51	4	8	35	1.52
6562828--6563028	22	9.2	22	71	12	67	47	4	10	36	1.59
6563040--6563088	22	2.2	22	85	7	64	61	6	2	30	1.32
6563135--6563251	44	2.7	44	81	2	137	52	3	8	35	1.49
6563135--6563252	22	5.4	22	75	0	119	52	3	8	35	1.49
6563628--6563700	22	3.4	21	74	12	60	54	6	4	34	1.46
6563794--6563852	22	2.7	22	79	10	66	49	10	10	30	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6564077--6564216	22	6.4	22	73	6	104	43	6	12	37	1.68
6564080--6564385	44	6.8	44	73	11	181	46	6	8	38	1.61
6564075--6564203	66	2.0	66	85	0	177	45	6	11	35	1.68
6564222--6564312	11	8.3	11	69	12	62	51	4	3	40	1.38
6564217--6564312	22	4.4	22	80	5	86	50	4	4	41	1.41
6564261--6564378	22	5.5	21	82	5	128	48	8	5	37	1.58
6564296--6564385	21	4.2	21	89	2	117	46	8	8	35	1.66
6564629--6564987	22	16.5	22	72	8	137	47	8	7	36	1.64
6564807--6564981	66	2.7	66	77	0	179	47	10	5	36	1.62
6564748--6564993	44	5.6	44	75	5	183	46	10	6	36	1.65
6564732--6564993	22	11.9	22	75	3	152	46	9	6	36	1.64
6565158--6565234	22	3.5	22	74	8	68	46	7	9	36	1.64
6565223--6565265	22	2.0	22	85	0	59	46	2	4	46	1.36
6570408--6570594	94	2.0	95	87	5	272	54	16	17	11	1.71
6570579--6570634	28	2.0	28	89	0	85	57	5	19	17	1.59
6570792--6570852	31	2.0	31	93	0	104	49	19	8	22	1.75
6570811--6571002	95	2.0	95	85	6	260	53	16	18	12	1.73
6571642--6571855	104	2.1	104	98	0	410	46	14	16	21	1.84
6571859--6571943	44	1.9	44	95	0	152	55	10	20	14	1.68
6577329--6577368	19	2.1	19	95	0	71	55	0	0	45	0.99
6577496--6577535	2	21.5	2	82	14	50	47	0	2	50	1.14
6579127--6579181	4	13.8	4	82	0	56	54	3	1	40	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6579129--6579175	8	5.9	8	87	0	67	57	4	0	38	1.18
6581568--6581795	118	1.9	118	85	1	314	39	20	14	25	1.90
6585374--6585406	17	1.9	18	88	11	52	45	6	3	45	1.43
6586341--6586379	12	3.2	12	82	10	53	66	2	0	30	1.05
6587533--6587593	30	2.0	30	83	0	77	44	0	1	54	1.10
6587566--6587617	22	2.5	22	93	6	90	50	0	0	50	1.00
6598970--6599029	31	2.0	30	86	3	84	58	5	0	36	1.20
6600290--6600354	34	1.9	34	87	9	98	29	24	33	12	1.92
6600278--6600360	33	2.5	33	82	9	98	27	26	36	9	1.88
6600643--6600724	36	2.2	37	85	6	105	37	0	4	57	1.20
6602466--6602500	17	2.1	17	100	0	70	37	5	11	45	1.64
6602406--6602555	72	2.1	72	94	2	266	30	12	13	44	1.81
6615285--6615313	3	9.7	3	100	0	58	31	0	0	68	0.89
6619010--6619063	22	2.4	22	84	3	81	48	0	0	51	1.00
6619049--6619097	22	2.1	25	85	11	68	73	0	0	26	0.83
6619542--6619596	23	2.4	23	75	0	56	43	0	0	56	0.99
6619558--6619594	13	2.5	16	87	12	53	43	0	0	56	0.99
6619591--6619621	13	2.5	13	94	5	55	19	0	6	74	1.03
6620130--6620184	14	4.2	13	75	13	51	47	0	1	50	1.11
6622286--6622315	2	15.0	2	100	0	60	50	0	50	0	1.00
6624712--6624736	12	2.1	12	100	0	50	0	8	0	92	0.40
6624714--6624746	15	2.1	16	94	5	59	3	6	0	90	0.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6624709--6624737	13	2.1	14	93	6	51	0	10	0	89	0.48
6628763--6628813	20	2.5	22	78	12	63	49	0	0	50	1.00
6633131--6633167	19	2.0	18	89	5	56	78	2	18	0	0.87
6633130--6633167	20	1.9	20	88	0	58	78	2	18	0	0.86
6635738--6635776	21	1.9	21	84	5	53	61	10	10	17	1.55
6636342--6636798	226	2.0	227	92	1	756	34	9	22	32	1.87
6638896--6638947	21	2.5	22	82	14	65	44	0	0	55	0.99
6638903--6638947	24	1.9	24	86	4	65	46	0	0	53	1.00
6641107--6641155	16	2.9	17	82	11	66	42	0	2	55	1.11
6648322--6648467	6	23.8	6	74	14	120	0	47	1	50	1.14
6648328--6648455	33	3.7	35	80	10	120	0	47	0	50	1.12
6648328--6648469	72	2.0	72	85	2	196	0	47	1	50	1.15
6648404--6648445	21	2.0	21	90	0	66	0	42	0	57	0.99
6653341--6653381	16	2.6	16	85	11	57	19	0	2	78	0.87
6655386--6655457	21	3.6	21	70	22	55	29	5	5	59	1.43
6655791--6655848	10	5.9	9	79	16	53	41	0	5	53	1.23
6655789--6655851	21	3.2	20	78	12	76	42	0	4	52	1.22
6655885--6655948	18	3.3	20	79	12	64	37	0	3	59	1.13
6655810--6655948	21	7.1	18	70	21	68	37	2	5	55	1.34
6658686--6658728	21	2.0	21	82	8	52	9	0	13	76	1.01
6666931--6666974	21	2.2	20	83	4	52	11	4	9	75	1.19
6667547--6667576	15	1.9	16	93	6	53	53	0	46	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6673242--6673362	21	5.7	21	79	8	138	37	4	17	40	1.71
6673708--6673784	17	4.5	17	75	6	75	38	9	12	38	1.76
6673803--6673875	18	4.0	19	67	16	64	41	8	13	36	1.75
6673839--6673879	17	2.4	17	87	0	64	39	2	14	43	1.59
6674098--6674252	44	3.5	43	80	8	161	27	9	14	49	1.73
6674124--6674241	43	2.7	42	83	6	128	26	9	17	46	1.78
6691593--6691626	15	2.3	15	89	0	50	41	17	11	29	1.85
6694452--6694479	2	14.0	2	100	0	56	50	0	0	50	1.00
6698033--6698057	4	6.2	4	100	0	50	72	0	28	0	0.86
6698860--6698887	12	2.3	12	100	0	56	35	17	7	39	1.78
6701649--6701683	15	2.3	15	90	5	52	31	0	0	68	0.90
6706181--6706210	2	15.0	2	92	0	51	50	0	3	46	1.18
6713203--6713252	26	1.9	26	100	0	100	50	0	0	50	1.00
6719581--6719620	19	2.1	19	90	9	64	60	0	0	40	0.97
6719956--6719983	2	14.0	2	100	0	56	50	0	0	50	1.00
6720303--6720463	80	2.0	80	96	0	295	27	11	13	47	1.76
6723326--6723351	2	13.0	2	100	0	52	50	0	0	50	1.00
6728558--6728721	58	2.8	57	88	5	229	40	12	5	40	1.66
6728563--6728744	58	3.1	57	79	10	197	40	10	6	42	1.66
6728747--6728801	6	9.7	6	88	7	80	81	0	1	16	0.77
6728748--6728803	5	10.2	5	88	11	67	80	0	1	17	0.80
6728740--6728801	18	3.5	18	79	18	67	80	1	1	16	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6728748--6728801	11	4.8	11	89	10	83	81	0	1	16	0.78
6728825--6728859	3	11.7	3	100	0	70	68	0	0	31	0.90
6728750--6728859	12	9.2	12	80	13	77	69	4	0	25	1.14
6728750--6728859	18	6.1	18	77	15	77	69	4	0	25	1.14
6729639--6729824	25	7.6	25	73	21	121	65	1	4	29	1.18
6729667--6729746	17	4.6	18	77	11	71	67	1	2	28	1.11
6729728--6729829	26	3.8	26	76	13	89	64	0	3	31	1.11
6729639--6729777	51	2.8	50	82	9	144	65	1	4	28	1.20
6729707--6729800	17	5.3	17	68	14	55	61	0	5	32	1.18
6729657--6729829	55	3.4	50	78	12	151	65	0	4	30	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117