genome.fa.s101.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  90  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16264749--16264792	14	3.2	13	83	6	52	4	15	0	79	0.89
16267083--16267116	17	2.0	17	100	0	68	0	23	11	64	1.26
16268685--16268759	28	2.7	27	70	15	64	49	4	1	45	1.29
16268950--16269002	17	3.1	17	86	0	70	52	3	0	43	1.19
16270237--16270294	29	2.1	29	83	6	75	32	3	5	58	1.37
16270336--16270403	30	2.3	30	78	0	73	45	7	14	32	1.73
16274164--16274189	12	2.2	12	100	0	52	92	7	0	0	0.39
16277500--16277600	6	17.8	5	75	15	58	66	2	4	25	1.26
16277527--16277613	12	7.5	12	77	17	78	66	1	3	28	1.15
16277527--16277619	41	2.3	40	80	14	102	66	2	3	27	1.18
16277583--16277626	19	2.3	18	85	14	54	68	4	0	27	1.09
16277607--16277642	12	2.8	13	87	12	56	69	8	0	22	1.15
16277827--16277908	39	2.1	39	83	0	101	46	13	12	28	1.79
16277875--16277971	40	2.5	40	80	13	103	50	16	7	25	1.70
16278022--16278082	32	1.9	32	83	6	79	54	9	6	29	1.59
16278459--16278491	15	2.1	16	88	5	50	36	12	9	42	1.74
16279182--16279208	12	2.2	12	100	0	54	0	7	0	92	0.38
16279179--16279209	15	2.0	16	93	6	55	0	9	0	90	0.46
16283116--16283156	22	1.9	21	85	5	55	17	21	2	58	1.50
16288136--16288187	19	2.6	19	82	11	61	51	13	5	28	1.64
16293895--16293953	8	6.8	8	78	16	55	84	0	10	5	0.76
16293895--16293953	17	3.4	17	80	15	66	84	0	10	5	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16293904--16293990	10	8.6	10	75	17	65	78	1	12	8	1.02
16294077--16294125	21	2.3	21	93	6	82	34	8	4	53	1.50
16295966--16296028	32	2.0	31	87	3	90	26	11	6	55	1.59
16296051--16296114	34	1.9	33	84	9	85	21	15	7	54	1.66
16297384--16297437	3	17.7	3	81	14	58	25	3	0	70	1.04
16309379--16309470	31	2.9	32	72	6	80	15	16	18	50	1.79
16309193--16309717	89	5.9	88	79	4	493	17	22	16	43	1.88
16309589--16309869	152	1.8	152	83	1	366	17	23	16	43	1.88
16309721--16309888	89	1.9	89	87	2	248	18	23	16	41	1.90
16310385--16310442	26	2.2	26	78	6	64	22	25	22	29	1.99
16310517--16310581	3	21.7	3	96	0	121	33	30	0	35	1.58
16310580--16310636	3	19.0	3	92	0	87	28	1	0	70	0.98
16310587--16310650	21	3.1	21	86	6	78	20	3	1	75	1.03
16311015--16311052	10	3.7	10	86	6	58	18	0	7	73	1.06
16311016--16311052	11	3.5	11	85	7	58	16	0	8	75	1.02
16311409--16311445	19	1.9	19	88	0	56	8	8	2	81	0.97
16311409--16311465	19	2.9	18	82	7	51	14	5	3	77	1.08
16322082--16322134	3	17.7	3	88	7	81	69	0	1	28	0.99
16323505--16323567	32	2.0	31	84	9	83	57	6	9	26	1.55
16324811--16325062	135	1.9	134	91	0	414	38	23	16	21	1.92
16326342--16326390	21	2.3	21	86	6	64	48	4	10	36	1.56
16328179--16328211	15	2.3	15	89	5	50	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16328890--16328922	15	2.1	15	94	5	57	90	0	9	0	0.44
16328893--16328919	12	2.2	12	100	0	54	92	0	7	0	0.38
16329698--16329755	28	2.1	28	90	6	91	31	0	0	68	0.89
16329696--16329746	13	3.8	13	87	10	75	27	0	0	72	0.85
16331881--16331963	43	1.9	43	80	7	96	19	10	9	60	1.57
16332394--16332437	23	1.9	23	86	9	63	59	11	2	27	1.44
16332492--16332533	20	2.0	20	86	4	57	47	30	7	14	1.71
16332916--16332968	10	5.2	10	78	17	56	58	3	0	37	1.16
16332924--16333046	5	24.6	5	65	18	51	54	6	1	37	1.36
16333004--16333049	16	2.8	16	90	3	65	58	4	2	34	1.30
16333468--16333525	26	2.3	24	78	16	64	62	1	5	31	1.27
16334757--16334858	29	3.5	29	89	2	125	17	52	6	22	1.68
16334787--16334858	29	2.5	29	97	0	135	18	51	6	23	1.70
16336071--16336114	18	2.4	19	85	11	56	65	0	2	31	1.05
16336071--16336131	18	3.3	18	82	11	54	67	0	3	29	1.07
16336044--16336309	130	2.1	130	92	2	446	55	3	8	32	1.47
16336216--16336261	18	2.6	18	82	6	58	65	0	6	28	1.17
16342558--16342583	12	2.2	12	100	0	52	19	7	23	50	1.73
16342992--16343065	8	9.4	8	79	19	66	9	9	0	81	0.89
16342993--16343042	15	3.3	15	78	10	57	8	12	0	80	0.92
16349801--16349871	15	4.3	16	70	22	58	35	1	1	61	1.13
16350480--16350527	20	2.4	19	76	10	51	47	4	0	47	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16354666--16354704	15	2.6	15	95	0	69	51	7	2	38	1.44
16359708--16359751	23	1.9	23	90	0	70	50	2	9	38	1.47
16368186--16368458	129	2.1	129	84	4	347	42	5	9	43	1.59
16368424--16368466	16	2.7	16	82	7	52	39	2	2	55	1.25
16368288--16368563	128	2.1	128	80	5	288	43	6	7	43	1.57
16368846--16369149	129	2.4	126	80	10	298	43	3	11	41	1.59
16369427--16369540	34	3.4	35	83	6	119	40	16	7	35	1.78
16369435--16369533	34	2.9	34	85	8	123	41	17	8	33	1.78
16370045--16370090	23	2.0	24	86	4	67	30	0	0	69	0.89
16370170--16370260	34	2.7	34	78	10	96	39	6	13	40	1.70
16376979--16377022	15	3.0	14	80	9	52	81	6	2	9	0.94
16376981--16377033	16	3.5	14	78	16	52	84	3	5	5	0.85
16377568--16377618	16	3.7	14	73	21	54	82	0	3	13	0.81
16377566--16377624	18	3.5	17	80	13	59	81	1	5	11	0.93
16378334--16378413	22	3.7	23	72	11	69	31	25	15	28	1.95
16378201--16378547	154	2.2	153	82	5	401	25	22	16	35	1.94
16378498--16378547	22	2.3	22	89	0	73	26	34	16	24	1.95
16378375--16378746	132	2.8	131	81	8	391	24	22	16	36	1.94
16380387--16380417	11	2.9	11	95	4	55	74	0	0	25	0.82
16380419--16380454	3	12.0	3	100	0	72	66	0	0	33	0.92
16380611--16380775	28	5.8	28	69	20	92	46	33	0	20	1.55
16380747--16380789	15	2.8	15	82	3	50	44	32	0	23	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16380734--16380800	30	2.2	30	78	5	73	43	32	0	23	1.54
16380978--16381009	17	1.9	16	93	6	55	65	0	12	21	1.25
16382299--16382329	14	2.1	15	94	5	55	51	6	6	35	1.53
16383451--16383495	20	2.2	20	96	0	81	35	22	6	35	1.80
16385819--16386056	109	2.2	108	87	6	336	23	21	17	37	1.93
16386021--16386090	21	3.4	21	74	7	72	30	21	18	30	1.97
16385923--16386227	150	2.0	151	83	5	377	25	18	18	37	1.93
16386052--16386304	129	2.0	128	83	6	325	25	16	18	39	1.91
16386212--16386402	88	2.2	87	86	0	265	23	17	18	40	1.91
16386380--16386468	22	4.0	22	85	11	112	28	25	17	28	1.98
16386534--16386614	22	3.7	23	70	17	64	32	23	14	29	1.95
16386534--16386618	44	1.9	45	88	4	129	32	22	15	29	1.94
16386554--16386621	22	3.1	21	76	14	75	35	23	11	29	1.90
16386330--16386752	154	2.8	156	84	6	551	27	20	14	36	1.92
16386688--16386746	22	2.7	22	92	5	93	28	27	15	28	1.96
16386694--16386757	22	3.0	21	88	6	76	32	25	14	28	1.94
16386576--16386857	131	2.1	133	83	5	351	26	20	15	36	1.93
16386576--16386937	131	2.8	131	80	6	342	26	19	16	38	1.92
16388561--16388600	11	3.9	11	81	15	50	70	0	0	30	0.88
16388561--16388600	20	2.1	19	90	4	62	70	0	0	30	0.88
16388602--16388637	3	12.0	3	100	0	72	66	0	0	33	0.92
16388759--16388970	28	7.4	28	70	19	100	47	30	0	20	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16388810--16388950	28	5.0	28	70	13	101	47	31	0	21	1.51
16388800--16388987	57	3.3	55	76	12	173	46	31	0	21	1.56
16390499--16390528	14	2.1	15	93	6	53	50	6	6	36	1.55
16393065--16393097	18	1.9	18	88	11	52	60	0	6	33	1.21
16398715--16398743	13	2.2	13	100	0	58	37	0	0	62	0.96
16399199--16399252	3	18.0	3	100	0	108	66	0	0	33	0.92
16406810--16406843	16	2.1	17	89	10	54	50	0	0	50	1.00
16407950--16408007	26	2.2	26	96	0	107	58	0	3	37	1.15
16414380--16414411	2	16.0	2	100	0	64	50	0	50	0	1.00
16418507--16418536	14	2.1	14	93	0	51	60	16	0	23	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117