genome.fa.s101.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  67  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12421437--12421501	33	2.0	33	87	0	94	24	13	21	40	1.90
12422512--12422576	33	2.0	33	87	0	94	24	13	21	40	1.90
12429835--12430022	94	2.0	94	95	0	340	40	17	14	28	1.88
12432650--12432674	12	2.1	12	100	0	50	84	0	8	8	0.79
12440977--12441016	20	2.0	21	85	5	55	65	10	0	25	1.24
12442833--12442994	67	2.4	66	80	6	173	34	10	20	34	1.87
12450824--12450949	33	3.8	32	74	17	89	72	2	4	20	1.15
12450899--12450949	24	2.2	24	80	16	63	74	3	1	19	1.07
12453244--12453283	3	13.7	3	94	5	73	70	0	0	30	0.88
12453599--12453641	19	2.2	19	84	12	52	79	6	9	4	1.06
12455794--12455874	17	4.2	18	68	25	58	69	1	6	23	1.19
12456611--12456700	26	3.5	26	78	6	92	17	25	25	31	1.97
12456716--12456741	6	4.3	6	100	0	52	30	0	0	69	0.89
12456768--12456810	3	14.3	3	85	0	59	30	2	2	65	1.18
12457798--12457840	3	14.7	3	95	4	79	69	0	0	30	0.88
12457796--12457843	15	3.3	15	91	2	71	72	0	0	27	0.84
12457796--12457843	9	5.4	9	92	2	53	72	0	0	27	0.84
12458457--12458482	12	2.2	12	100	0	52	7	15	0	76	0.99
12461867--12461962	8	11.5	8	72	20	72	81	4	13	1	0.89
12461868--12461962	18	5.2	17	72	13	73	81	4	13	1	0.90
12461866--12461946	37	2.2	36	85	8	103	83	4	9	1	0.83
12462874--12463043	86	2.0	86	83	0	214	28	17	14	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12463038--12463253	86	2.5	86	80	1	227	27	18	14	39	1.89
12463272--12463314	17	2.5	18	81	11	63	13	18	11	55	1.68
12464251--12464276	3	8.7	3	100	0	52	34	30	0	34	1.58
12465087--12465116	13	2.3	13	94	0	51	13	3	3	80	0.97
12465100--12465140	21	2.0	21	90	0	64	24	0	2	73	0.96
12465259--12465320	3	20.7	3	100	0	124	67	0	0	32	0.91
12466482--12466526	21	2.1	22	84	12	58	17	0	17	64	1.29
12470602--12470653	19	2.8	19	83	13	56	75	0	19	5	1.01
12470602--12470652	20	2.6	19	82	11	59	76	0	17	5	0.98
12471149--12471220	26	2.7	26	81	12	83	63	1	29	5	1.25
12471191--12471229	20	2.0	19	85	14	53	66	2	20	10	1.33
12472136--12472195	30	2.0	30	83	6	77	28	20	18	33	1.96
12472313--12472412	22	4.5	22	80	5	112	30	24	19	27	1.98
12472303--12472412	44	2.5	44	80	5	132	31	24	18	25	1.97
12472740--12472774	18	1.9	18	88	11	54	74	0	2	22	0.95
12475317--12475363	17	2.9	16	80	20	62	76	0	2	21	0.89
12475614--12475679	26	2.5	26	85	0	87	27	25	16	30	1.97
12475703--12475771	36	1.9	36	82	8	88	11	7	7	73	1.23
12476666--12476703	3	12.7	3	94	0	67	65	0	0	34	0.93
12480633--12480717	18	4.8	17	71	23	50	81	4	14	0	0.85
12480631--12480678	17	3.0	15	77	14	51	81	6	12	0	0.87
12480660--12480724	32	2.0	32	82	5	78	80	6	13	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12481654--12481940	136	2.1	137	83	3	355	27	18	13	40	1.89
12481792--12482023	86	2.7	86	83	1	288	26	18	14	40	1.89
12481963--12482061	51	1.9	51	87	0	144	26	17	11	45	1.81
12481645--12482052	222	1.8	222	85	1	575	28	18	13	39	1.88
12482548--12482886	120	2.8	120	78	4	378	17	21	15	44	1.86
12483023--12483157	26	5.2	26	74	4	112	22	25	20	30	1.99
12483223--12483286	3	21.3	3	90	0	101	31	1	1	65	1.11
12484961--12485080	61	2.0	61	87	6	176	67	0	4	27	1.14
12484993--12485080	29	2.9	29	73	20	74	68	1	4	26	1.16
12488407--12488453	25	1.9	25	83	12	62	46	10	17	25	1.79
12488581--12488779	7	29.6	7	71	10	103	20	1	33	45	1.58
12488639--12488683	20	2.2	21	84	4	56	26	2	28	42	1.67
12488633--12488695	27	2.3	27	83	8	74	25	3	26	44	1.69
12488651--12488779	28	4.6	27	79	13	120	19	1	33	45	1.60
12491367--12491516	32	4.7	31	73	7	122	19	20	20	40	1.92
12491808--12491855	8	5.8	8	76	9	51	4	16	0	79	0.89
12491808--12491905	43	2.3	43	80	8	110	8	16	0	75	1.03
12493772--12493846	30	2.6	29	82	12	91	6	13	0	80	0.91
12495071--12495099	13	2.1	14	93	6	51	0	17	0	82	0.66
12495083--12495138	29	2.0	28	82	3	67	10	12	14	62	1.55
12498075--12498190	35	3.3	34	84	6	142	35	10	23	31	1.88
12497980--12498213	36	6.4	36	75	14	144	31	11	23	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12499147--12499200	25	2.2	25	93	0	90	51	7	12	27	1.66
12500135--12500181	25	1.9	24	87	12	69	48	14	14	21	1.80
12500135--12500181	24	1.9	25	87	12	71	48	14	14	21	1.80
12500160--12500211	17	3.1	16	74	15	50	50	11	15	23	1.76
12500160--12500216	18	3.2	18	70	20	57	49	10	15	24	1.76
12500391--12500445	17	3.2	17	80	16	69	25	5	27	41	1.77
12501695--12501799	36	2.9	35	76	16	88	71	1	6	20	1.18
12501734--12501798	26	2.7	24	77	17	71	70	0	7	21	1.11
12501773--12501812	18	2.2	19	86	4	55	75	0	10	15	1.05
12511053--12511116	9	6.8	9	73	19	51	73	1	6	18	1.12
12511041--12511134	48	1.9	50	91	8	158	71	2	7	19	1.20
12511295--12511328	17	2.0	17	88	0	50	2	41	5	50	1.42
12511424--12511448	13	1.9	13	100	0	50	60	16	0	24	1.36
12514500--12514555	18	3.1	17	77	10	58	19	1	5	73	1.12
12514521--12514564	18	2.4	18	81	7	54	20	4	2	72	1.13
12515541--12515597	11	4.7	11	74	19	51	17	5	1	75	1.07
12515529--12515597	25	2.8	25	84	6	88	14	7	1	76	1.06
12521648--12521686	17	2.2	19	86	9	55	64	0	0	35	0.94
12521666--12521710	24	2.0	22	82	8	54	64	0	6	28	1.19
12521662--12521728	25	2.6	26	72	11	66	65	1	4	28	1.21
12523322--12523361	20	2.0	20	90	0	62	27	5	0	67	1.11
12523638--12523680	21	2.0	21	95	0	77	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12523782--12523884	13	8.0	12	74	13	80	51	23	6	18	1.70
12523797--12523869	25	2.8	26	85	4	85	53	24	2	19	1.58
12523862--12523954	19	4.9	19	78	6	109	45	29	10	15	1.79
12523784--12523885	27	3.9	25	83	5	114	51	24	5	17	1.67
12523875--12523980	39	2.8	38	81	4	99	42	29	13	15	1.84
12525935--12525969	17	2.1	17	100	0	70	48	0	22	28	1.51
12527253--12527298	24	1.9	24	82	8	58	52	2	4	41	1.33
12530118--12530167	3	16.7	3	100	0	100	32	0	0	68	0.90
12540123--12540170	17	2.7	18	78	9	55	68	2	0	29	1.01
12540390--12540423	14	2.5	13	86	9	50	26	2	0	70	1.01
12540622--12540736	6	19.3	6	74	12	67	75	7	3	13	1.14
12541713--12541761	22	2.2	22	89	7	73	77	12	4	6	1.09
12541716--12541755	13	3.1	13	88	0	53	80	15	2	2	0.93
12541798--12541848	12	4.3	12	75	2	50	21	58	13	5	1.56
12541798--12541848	24	2.2	23	82	10	59	21	58	13	5	1.56
12542654--12542710	14	3.9	15	75	11	64	35	43	21	0	1.52
12542652--12542739	30	2.9	30	86	5	115	35	39	21	3	1.70
12543426--12543807	193	2.0	192	94	3	669	36	12	15	35	1.85
12553183--12553235	26	2.0	26	96	0	97	28	24	20	26	1.99
12558199--12558575	48	7.8	49	91	3	577	27	11	27	33	1.92
12558199--12558575	193	2.0	193	91	3	616	27	11	27	33	1.92
12558740--12558788	22	2.2	22	89	7	73	77	12	4	6	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12558743--12558782	13	3.1	13	88	0	53	80	15	2	2	0.93
12558825--12558875	12	4.3	12	75	2	50	21	58	13	5	1.56
12558825--12558875	24	2.2	23	82	10	59	21	58	13	5	1.56
12559674--12559739	5	13.2	5	72	22	50	36	40	22	0	1.54
12559674--12559768	30	3.2	30	89	1	129	33	38	24	3	1.71
12559855--12559891	18	2.1	18	89	0	56	40	0	8	51	1.32
12560450--12560831	193	2.0	192	94	3	669	36	12	15	35	1.85
12565078--12565154	34	2.3	34	84	4	93	41	16	10	31	1.82
12565102--12565210	34	3.2	34	74	7	103	35	15	11	37	1.83
12575764--12575816	20	2.6	21	79	5	56	45	1	1	50	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117